Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W9F	32366	2024-02-13	2021-12-09	3.6	2.59	—	2.2	0.003	0.73	0.0	0.05	13.99	0.01	2.302	3.37	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.62	0.0	0.04	16.03	0.00	2.228	10.74	3.30	4.5	95.5	0.0	-1.02	0.51	0.74	0.73	2.18	4856	625	3	0	0	0	0	logfile
✔	7T4E	25673	2024-02-21	2021-12-09	2.87	2.29	—	2.1	0.002	0.53	0.0	0.05	12.92	0.01	2.117	10.78	0.00	2.9	97.1	0.0	-0.63	0.77	0.79	4.42	2.2	0.004	0.62	0.0	0.05	16.89	0.01	2.094	11.36	2.08	4.0	96.0	0.0	-0.98	0.42	0.79	0.83	3.91	19376	2456	8	0	0	0	0	logfile
✔	7T4G	25676	2024-02-18	2021-12-09	3.7	4.03	3.74	3.9	0.022	1.83	0.0	0.15	14.43	0.01	2.363	1.24	0.26	2.9	95.8	1.3	-0.17	0.80	0.82	1.87	3.9	0.004	0.75	0.0	0.05	13.15	0.00	2.163	11.85	2.38	6.9	92.8	0.3	-1.08	1.41	0.80	0.82	1.80	23045	2619	57	0	175	0	0	logfile
✔	7W9E	32365	2024-02-20	2021-12-09	3.1	2.99	—	2.8	0.004	0.58	0.0	0.04	12.89	0.00	2.028	3.16	0.00	3.9	96.1	0.0	-3.93	0.76	0.71	2.09	2.8	0.004	0.62	0.0	0.04	15.49	0.00	2.112	9.33	2.03	4.9	95.1	0.0	-0.73	0.91	0.80	0.79	1.98	28181	3611	5	0	0	0	0	logfile
✔	7W98	32361	2024-02-21	2021-12-09	3.6	3.82	—	3.7	0.003	0.57	0.0	0.04	12.49	0.00	2.038	1.60	0.03	2.6	97.4	0.0	-3.30	0.69	0.69	1.35	3.7	0.003	0.65	0.0	0.04	15.74	0.00	2.056	11.59	2.45	3.6	96.4	0.0	-0.23	1.85	0.70	0.73	1.22	29737	3777	4	0	0	0	0	logfile
✔	7W9B	32363	2024-02-21	2021-12-09	3.4	3.64	—	3.6	0.004	0.58	0.0	0.04	12.34	0.00	2.057	1.77	0.03	2.8	97.2	0.0	-3.40	0.66	0.69	1.74	3.6	0.004	0.70	0.0	0.04	16.40	0.00	2.051	12.55	2.30	5.1	94.9	0.0	-0.64	1.02	0.68	0.75	1.80	29737	3777	4	0	0	0	0	logfile
✔	7W99	32362	2024-02-21	2021-12-09	3.4	3.65	—	3.6	0.004	0.59	0.0	0.04	12.55	0.00	2.076	1.67	0.12	3.1	96.9	0.0	-3.42	0.65	0.69	1.63	3.6	0.003	0.64	0.0	0.04	16.02	0.00	2.101	10.47	2.21	3.7	96.3	0.0	-0.30	0.99	0.68	0.74	1.47	29737	3777	4	0	0	0	0	logfile
✔	7W9C	32364	2024-02-21	2021-12-09	3.2	3.43	—	3.5	0.004	0.61	0.0	0.04	12.69	0.00	2.079	1.76	0.00	2.8	97.2	0.0	-3.72	0.64	0.69	2.04	3.4	0.003	0.64	0.0	0.04	16.10	0.00	2.097	10.11	2.36	4.6	95.4	0.0	-0.54	1.47	0.67	0.76	1.89	29737	3777	4	0	0	0	0	logfile
✔	7QGN	13956	2024-02-27	2021-12-09	3.37	5.04	—	3.4	0.016	1.62	61.0	0.11	22.93	0.01	0.771	4.90	1.61	8.6	90.4	1.0	-3.93	0.63	0.45	0.27	3.4	0.003	0.67	0.0	0.04	23.40	0.00	1.924	21.93	2.68	9.5	90.4	0.1	-1.76	2.74	0.78	0.77	0.48	147306	5975	59	4695	3	9	0	logfile
✔	7T3Q	25668	2024-02-16	2021-12-08	3.3	3.64	3.39	3.6	0.004	0.54	0.0	0.04	14.70	0.00	2.049	7.69	0.00	4.5	95.5	0.0	1.74	0.70	0.74	2.52	3.6	0.006	0.70	0.0	0.04	16.46	0.00	2.108	12.35	2.31	4.9	95.1	0.0	0.50	0.82	0.74	0.80	2.15	68124	8336	8	0	88	0	0	logfile
✔	7T3T	25670	2024-02-17	2021-12-08	3.8	4.12	3.99	4.0	0.003	0.53	0.0	0.04	14.36	0.00	2.071	8.23	0.05	4.3	95.7	0.0	1.40	0.73	0.78	1.63	4.0	0.006	0.80	0.0	0.04	16.76	0.00	2.001	17.09	3.09	5.6	94.4	0.0	0.32	0.94	0.75	0.84	1.31	68516	8408	8	0	92	0	0	logfile
✔	7T3o	25666	2024-02-13	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.64	0.0	0.04	16.10	0.00	2.296	4.66	3.52	4.9	95.1	0.0	0.11	0.51	0.49	0.85	1.58	3410	452	1	0	0	0	0	logfile
✔	7T3L	25662	2024-02-25	2021-12-08	3.6	8.29	—	3.5	0.004	0.74	0.0	0.05	18.09	0.01	2.223	7.57	0.52	5.0	95.0	0.0	-1.92	0.73	0.45	-0.03	3.4	0.003	0.61	0.0	0.04	18.37	0.00	2.091	21.81	1.24	5.6	94.4	0.0	0.29	1.18	0.95	0.84	-0.02	52219	6242	28	200	0	0	0	logfile
✔	7T3R	25669	2024-02-17	2021-12-08	3.4	3.68	3.48	3.6	0.004	0.54	0.0	0.04	14.60	0.00	2.035	8.37	0.00	4.7	95.3	0.0	1.52	0.71	0.78	2.05	3.6	0.005	0.67	0.0	0.04	16.72	0.00	2.083	11.66	2.48	4.5	95.5	0.0	0.87	1.10	0.76	0.86	1.89	68780	8444	8	0	88	0	0	logfile
✔	7T3P	25667	2024-02-16	2021-12-08	3.2	3.52	3.32	3.5	0.004	0.54	0.0	0.04	14.83	0.00	2.019	8.33	0.00	4.1	95.9	0.0	1.75	0.67	0.70	2.04	3.5	0.003	0.61	0.0	0.04	16.22	0.00	2.116	10.99	2.02	3.2	96.8	0.0	1.30	1.82	0.70	0.77	2.07	66992	8188	8	0	88	0	0	logfile
✔	7T3N	25665	2024-02-13	2021-12-08	3.0	3.31	—	3.3	0.009	0.73	0.0	0.05	16.81	0.01	2.131	5.13	0.00	4.7	95.3	0.0	-3.24	0.51	0.85	3.81	3.3	0.003	0.63	0.0	0.04	15.58	0.00	2.287	7.63	1.45	2.9	97.1	0.0	0.20	0.40	0.49	0.84	2.67	3512	452	1	0	2	0	0	logfile
✔	7T3J	25660	2024-02-20	2021-12-08	3.2	3.05	—	3.2	0.004	0.74	0.0	0.05	17.15	0.01	2.241	6.11	0.58	4.9	95.1	0.0	-1.91	0.87	0.81	1.94	3.2	0.002	0.54	0.0	0.04	17.31	0.00	2.171	11.50	2.11	5.2	94.8	0.0	0.19	0.31	0.88	0.83	1.87	27076	3349	12	61	0	0	0	logfile
✔	7T3K	25661	2024-02-25	2021-12-08	3.5	4.08	—	3.5	0.004	0.75	0.0	0.05	17.27	0.01	2.223	7.05	0.52	5.0	95.0	0.0	-1.93	0.80	0.64	0.97	3.6	0.004	0.70	0.0	0.04	17.69	0.00	2.090	19.11	2.27	5.7	94.3	0.0	-0.06	1.43	0.90	0.82	1.08	50620	6242	22	122	0	0	0	logfile
✔	7QGH	13955	2024-02-26	2021-12-08	4.48	9.26	—	4.8	0.016	1.62	58.0	0.11	22.93	0.01	0.197	5.44	1.41	8.8	90.2	1.0	-4.05	0.66	0.38	—	4.5	0.003	0.69	0.0	0.04	24.19	0.01	1.599	34.20	0.02	8.8	91.1	0.1	-2.08	2.07	0.85	0.77	—	147973	6046	58	4716	3	9	0	logfile
✔	7T3U	25671	2024-02-24	2021-12-08	3.7	4.00	3.79	3.8	0.002	0.45	0.0	0.04	12.94	0.00	1.968	6.33	0.00	4.2	95.8	0.0	1.94	0.59	0.60	1.23	3.8	0.020	1.27	0.0	0.06	15.31	0.01	1.941	22.33	7.81	10.1	89.8	0.1	-0.80	2.21	0.64	0.71	1.23	44501	7269	8	0	14	0	0	logfile

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