Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T3P	25667	2024-02-16	2021-12-08	3.2	3.52	3.32	3.5	0.004	0.54	0.0	0.04	14.83	0.00	2.019	8.33	0.00	4.1	95.9	0.0	1.75	0.67	0.70	2.04	3.5	0.003	0.61	0.0	0.04	16.22	0.00	2.116	10.99	2.02	3.2	96.8	0.0	1.30	1.82	0.70	0.77	2.07	66992	8188	8	0	88	0	0	logfile
✔	7T3o	25666	2024-02-13	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.64	0.0	0.04	16.10	0.00	2.296	4.66	3.52	4.9	95.1	0.0	0.11	0.51	0.49	0.85	1.58	3410	452	1	0	0	0	0	logfile
✔	7W8S	32358	2024-02-13	2021-12-08	2.85	3.08	—	3.1	0.003	0.60	0.0	0.04	11.07	0.01	2.102	0.87	3.48	3.4	96.6	0.0	-4.03	0.67	0.82	4.11	3.1	0.003	0.62	0.0	0.04	14.81	0.00	2.242	2.46	2.03	2.7	97.3	0.0	-1.01	0.97	0.68	0.83	3.35	6455	788	4	0	3	0	0	logfile
✔	7T3A	25652	2024-02-19	2021-12-07	4.0	4.44	—	4.2	0.006	1.20	1.0	0.07	15.61	0.01	2.234	7.29	0.04	9.3	90.7	0.0	-3.22	0.81	0.81	—	4.2	0.003	0.73	0.0	0.04	16.81	0.00	2.154	15.22	2.28	7.1	92.9	0.0	-1.29	0.47	0.81	0.80	—	23310	2897	11	0	1	0	0	logfile
✔	7QG0	13951	2024-02-19	2021-12-07	4.02	4.24	—	4.0	0.006	0.84	0.0	0.04	14.92	0.00	2.062	26.03	1.71	10.1	89.9	0.0	-4.81	0.85	0.81	—	4.0	0.003	0.65	0.0	0.04	14.54	0.00	2.190	15.06	0.00	4.7	95.3	0.0	0.53	0.76	0.84	0.79	—	78880	10096	16	0	0	0	0	logfile
✔	7W8J	32357	2024-02-20	2021-12-07	2.5	2.29	2.50	2.5	0.014	1.62	0.0	0.08	14.21	0.00	1.909	2.70	0.24	2.5	97.5	0.0	-0.35	0.60	0.76	5.44	2.4	0.004	0.60	0.0	0.05	15.52	0.00	1.862	4.82	1.73	2.9	97.1	0.0	0.58	1.13	0.77	0.89	5.11	28678	3548	20	0	4	290	0	logfile
✔	7QG8	13952	2024-02-27	2021-12-07	3.97	7.71	—	4.0	0.016	1.62	61.0	0.11	22.93	0.01	0.770	4.86	1.61	8.6	90.4	1.0	-3.97	0.64	0.40	0.16	4.0	0.003	0.74	0.0	0.04	24.56	0.01	1.902	35.77	2.68	10.2	89.7	0.1	-2.28	3.35	0.84	0.76	-0.02	147108	5936	58	4695	3	9	0	logfile
✔	7QG9	13953	2024-02-25	2021-12-07	3.45	3.10	3.41	3.3	0.003	0.54	0.0	0.04	13.21	0.00	2.156	8.97	0.00	3.3	96.7	0.0	-1.73	0.75	0.83	2.63	3.3	0.004	0.58	0.0	0.05	15.31	0.00	2.089	9.21	2.41	4.0	96.0	0.0	-1.33	0.40	0.77	0.85	2.40	50829	6576	27	0	0	0	0	logfile
✔	7T37	25650	2024-02-17	2021-12-07	3.7	4.02	—	4.0	0.007	0.85	0.0	0.05	13.20	0.01	2.247	4.17	0.00	3.8	96.2	0.0	-1.43	0.69	0.82	2.15	4.0	0.003	0.51	0.0	0.03	14.20	0.00	2.304	5.90	1.16	3.1	96.9	0.0	1.29	0.28	0.69	0.82	1.91	20176	2476	8	0	8	0	0	logfile
✔	7W8G	32355	2024-02-14	2021-12-07	2.52	2.20	—	2.5	0.004	0.77	0.0	0.05	14.00	0.01	2.042	5.41	0.04	2.3	97.7	0.0	-0.29	0.72	0.75	2.86	2.5	0.003	0.68	2.0	0.04	16.94	0.00	1.769	8.53	2.76	2.2	97.8	0.0	0.79	0.50	0.75	0.80	2.84	62460	7876	24	0	34	0	0	logfile
✔	7W85	32352	2024-02-19	2021-12-07	2.94	3.13	—	3.1	0.008	0.76	0.0	0.05	13.72	0.00	2.070	9.39	0.00	5.6	94.4	0.0	-0.79	0.64	0.63	2.89	3.1	0.003	0.67	0.0	0.04	16.25	0.00	1.955	9.62	1.14	4.3	95.7	0.0	0.28	1.58	0.73	0.84	2.48	81522	10440	48	0	42	0	0	logfile
✔	7T3D	25655	2024-02-18	2021-12-07	3.38	3.70	3.45	3.6	0.022	1.76	0.0	0.11	9.95	0.01	2.093	1.86	0.00	2.0	98.0	0.0	0.97	0.80	0.86	3.40	3.6	0.004	0.72	0.0	0.04	13.45	0.00	2.131	10.98	2.38	4.0	96.0	0.0	-0.25	1.39	0.80	0.87	2.60	22122	2796	27	0	21	0	0	logfile
✔	7W84	32351	2024-02-16	2021-12-07	3.4	2.66	—	3.4	0.004	0.74	1.0	0.05	16.68	0.00	1.982	18.13	7.85	12.9	87.0	0.1	-3.60	0.79	0.78	1.21	3.5	0.006	1.14	1.0	0.06	18.07	0.01	1.676	23.16	5.04	9.8	90.2	0.0	-1.80	0.53	0.80	0.79	1.44	7879	995	1	0	0	0	0	logfile
✔	7T38	25651	2024-02-17	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.19	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.002	0.54	0.0	0.04	15.64	0.00	2.259	6.50	1.55	3.7	96.3	0.0	1.63	1.56	0.70	0.82	1.30	19404	2432	4	0	0	0	0	logfile
✔	7T3C	25654	2024-02-22	2021-12-07	4.0	4.66	—	4.0	0.008	1.41	4.0	0.07	15.65	0.01	2.068	11.89	0.03	11.1	88.9	0.1	-3.78	0.82	0.69	—	4.0	0.003	0.79	0.0	0.05	17.16	0.00	2.049	25.03	2.58	9.2	90.8	0.1	-2.12	0.96	0.81	0.65	—	32452	4047	20	3	3	0	0	logfile
✔	7W88	32353	2024-02-13	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.29	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.004	0.75	0.0	0.04	17.76	0.01	2.152	18.24	8.10	18.5	81.5	0.0	-3.48	0.48	0.70	0.70	1.62	7138	896	1	0	0	0	0	logfile
✔	7T32	25648	2024-02-13	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.67	0.0	0.04	16.13	0.00	2.231	8.44	3.17	4.9	94.9	0.3	2.40	0.93	0.45	0.80	0.68	2861	375	1	0	1	0	0	logfile
✔	7W7T	32347	2024-02-13	2021-12-06	3.4	2.93	3.31	3.4	0.003	0.63	0.0	0.04	13.40	0.00	2.069	10.32	0.11	2.9	97.1	0.0	0.71	0.57	0.70	1.45	3.4	0.002	0.56	0.0	0.04	15.42	0.00	2.071	8.99	1.60	3.1	96.9	0.0	0.10	1.33	0.58	0.71	0.91	7903	1021	1	0	4	0	0	logfile
✔	7W7U	32348	2024-02-13	2021-12-06	3.0	2.54	2.92	2.9	0.003	0.56	0.0	0.04	12.54	0.00	1.966	7.56	0.00	2.6	97.4	0.0	0.77	0.59	0.77	1.85	3.0	0.002	0.50	0.0	0.04	16.16	0.00	2.070	7.94	1.39	2.8	97.2	0.0	0.60	1.30	0.59	0.79	1.47	7833	1015	1	0	2	0	0	logfile
✔	7T30	25647	2024-02-20	2021-12-06	3.0	2.23	—	2.1	0.006	1.08	0.0	0.06	17.54	0.01	2.121	11.32	6.14	8.2	91.8	0.0	-3.78	0.79	0.79	3.05	2.1	0.004	0.71	0.0	0.05	18.45	0.01	2.137	11.04	4.34	7.3	92.7	0.0	-1.20	0.93	0.80	0.82	3.01	28126	3578	18	0	24	0	0	logfile

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