Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W4o	32310	2024-02-13	2021-11-28	2.96	2.49	—	3.1	0.006	0.74	0.0	0.05	12.15	0.01	2.150	4.63	2.15	2.9	97.0	0.1	-0.13	0.81	0.82	2.93	3.1	0.005	0.62	0.0	0.04	15.27	0.00	1.937	10.28	3.47	2.6	97.2	0.2	1.10	0.63	0.81	0.84	2.71	54748	6944	12	0	20	0	0	logfile
✔	7W4P	32311	2024-02-13	2021-11-28	3.19	2.52	—	3.2	0.006	0.75	0.0	0.05	12.28	0.01	2.166	4.69	2.18	2.8	97.1	0.1	-0.24	0.80	0.80	2.05	3.1	0.005	0.75	3.0	0.04	14.80	0.01	1.858	9.28	2.13	3.2	96.7	0.1	1.49	1.97	0.81	0.83	2.11	54408	6904	16	0	24	0	0	logfile
✔	7QDH	13919	2024-02-19	2021-11-27	4.2	4.45	4.27	4.4	0.011	1.50	16.0	0.10	14.72	0.01	1.441	62.81	7.70	4.0	95.6	0.4	0.10	0.70	0.60	—	4.4	0.003	0.78	0.0	0.05	12.91	0.00	2.078	19.22	0.11	5.2	94.8	0.0	-1.03	1.81	0.72	0.68	—	25712	3219	16	0	44	0	0	logfile
✔	7SZi	25567	2024-02-13	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.005	0.55	0.0	0.04	14.28	0.00	2.182	3.67	0.84	3.7	96.2	0.1	0.19	0.26	0.72	0.88	5.07	8089	1038	4	0	0	0	0	logfile
✔	7QDG	13916	2024-02-19	2021-11-27	3.4	3.51	3.32	3.6	0.012	1.53	13.0	0.11	15.65	0.01	1.267	54.49	7.17	4.6	95.0	0.4	0.28	0.83	0.80	1.52	3.5	0.005	0.84	0.0	0.05	15.05	0.00	2.107	17.31	3.60	4.6	95.4	0.0	-0.40	0.95	0.83	0.82	1.63	25570	3193	17	0	47	0	0	logfile
✔	7QDo	13922	2024-02-13	2021-11-27	3.6	3.83	3.30	3.7	0.005	0.82	0.0	0.05	11.62	0.00	2.223	7.51	0.00	10.0	90.0	0.0	-0.82	0.71	0.74	3.77	3.7	0.004	0.75	0.0	0.04	16.01	0.00	2.132	12.88	2.91	9.3	90.7	0.0	-0.48	0.74	0.71	0.76	2.93	3304	424	2	0	0	0	0	logfile
✔	7W40	32298	2024-02-14	2021-11-26	3.0	2.99	—	3.0	0.011	1.29	2.0	0.08	12.47	0.01	2.266	7.35	1.92	2.6	97.2	0.2	-0.42	0.62	0.66	1.97	2.9	0.003	0.65	1.0	0.04	15.95	0.00	2.108	10.42	3.13	2.6	97.4	0.0	0.65	0.74	0.64	0.72	1.46	9236	1184	6	0	1	0	0	logfile
✔	7W3X	32295	2024-02-13	2021-11-26	3.21	2.33	3.15	2.2	0.004	0.76	0.0	0.05	18.43	0.00	2.190	8.18	0.00	9.0	91.0	0.0	-2.95	0.77	0.79	3.38	2.1	0.003	0.66	0.0	0.05	15.27	0.00	2.119	11.29	2.24	8.3	91.7	0.0	-2.76	0.95	0.78	0.82	2.78	7429	893	7	0	31	0	0	logfile
✔	7W3T	32293	2024-02-13	2021-11-26	3.59	2.49	3.54	2.2	0.004	0.73	0.0	0.05	17.98	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.1	0.004	0.63	0.0	0.05	15.15	0.00	2.212	14.47	1.88	5.7	94.3	0.0	-3.23	0.33	0.77	0.76	3.69	1455	176	3	0	7	0	0	logfile
✔	7W3V	32294	2024-02-13	2021-11-26	3.11	2.33	3.12	2.1	0.004	0.65	0.0	0.05	17.08	0.00	2.228	7.96	0.12	5.7	94.3	0.0	-2.67	0.79	0.79	3.31	2.1	0.003	0.63	0.0	0.05	15.05	0.00	2.196	7.56	2.96	6.7	93.3	0.0	-2.48	0.31	0.80	0.82	2.98	7480	918	8	0	24	0	0	logfile
✔	7W3Z	32297	2024-02-14	2021-11-26	3.0	3.02	—	3.0	0.010	1.25	0.0	0.08	12.51	0.01	2.266	6.00	1.61	2.5	97.5	0.0	-0.23	0.68	0.76	3.00	3.0	0.003	0.62	0.0	0.04	15.81	0.00	2.196	7.33	2.68	2.5	97.5	0.0	0.69	1.54	0.70	0.80	2.31	10221	1295	6	0	1	0	0	logfile
✔	7QD8	13910	2024-02-16	2021-11-26	3.6	3.90	3.66	3.8	0.004	0.74	0.0	0.05	14.49	0.00	2.273	5.28	0.00	2.3	97.7	0.0	-1.83	0.74	0.69	1.54	3.8	0.003	0.56	0.0	0.04	16.24	0.00	2.173	9.97	2.12	3.0	97.0	0.0	0.42	0.47	0.74	0.69	1.15	14086	1730	2	0	0	0	0	logfile
✔	7QD6	13909	2024-02-17	2021-11-26	3.0	3.13	3.04	3.0	0.005	0.89	0.0	0.05	22.48	0.01	2.270	4.29	0.00	2.6	97.4	0.0	-0.81	0.68	0.61	1.62	3.0	0.003	0.59	0.0	0.04	23.12	0.00	2.175	10.04	1.16	2.8	97.2	0.0	2.09	0.53	0.63	0.56	1.48	19112	1816	8	216	0	0	0	logfile
✔	7QD5	13908	2024-02-17	2021-11-26	3.1	3.21	3.05	3.1	0.005	0.82	0.0	0.05	19.64	0.01	2.266	2.08	0.13	2.4	97.6	0.0	-0.83	0.72	0.71	2.46	3.1	0.003	0.53	0.0	0.04	21.02	0.00	2.200	6.20	1.42	2.4	97.6	0.0	2.39	0.37	0.74	0.74	1.65	18380	1816	6	180	0	0	0	logfile
✔	7W4A	32299	2024-02-15	2021-11-26	2.76	2.16	2.69	2.2	0.006	0.71	0.0	0.04	13.80	0.00	2.048	7.08	0.09	2.3	97.7	0.0	1.29	0.63	0.77	3.24	2.2	0.002	0.53	0.0	0.04	15.72	0.00	2.016	6.93	1.71	2.2	97.8	0.0	1.53	0.41	0.63	0.79	3.11	9855	1245	5	0	7	12	0	logfile
✔	7W3Y	32296	2024-02-15	2021-11-26	3.0	3.45	—	3.4	0.006	0.68	0.0	0.04	13.23	0.00	2.117	13.31	0.91	6.5	93.5	0.0	-3.33	0.66	0.85	2.45	3.4	0.003	0.69	0.0	0.04	16.12	0.00	2.140	9.80	2.05	4.0	96.0	0.0	0.51	0.80	0.66	0.85	2.13	12088	1492	4	0	0	0	0	logfile
✔	7QD4	13906	2024-02-17	2021-11-26	2.9	3.11	2.96	3.0	0.004	0.82	0.0	0.05	22.06	0.01	2.227	3.43	0.00	2.2	97.8	0.0	-0.77	0.74	0.74	2.94	3.0	0.004	0.57	0.0	0.04	23.10	0.00	2.176	8.99	1.42	3.1	96.9	0.0	1.91	0.87	0.79	0.83	2.16	19118	1816	6	216	0	0	0	logfile
✔	7W37	32272	2024-02-13	2021-11-25	3.0	4.26	—	2.8	0.004	0.80	0.0	0.05	14.12	0.01	1.712	5.02	0.15	5.8	94.1	0.1	-0.60	0.85	0.84	2.30	2.8	0.004	0.63	0.0	0.04	15.43	0.00	1.820	10.20	0.83	6.1	93.8	0.1	0.75	0.34	0.86	0.88	2.00	106025	13527	54	0	13	0	0	logfile
✔	7W3F	32278	2024-02-14	2021-11-25	3.3	4.49	—	3.0	0.003	0.74	0.0	0.05	13.77	0.01	2.190	5.42	0.15	6.2	93.7	0.1	-0.80	0.83	0.80	1.91	3.0	0.004	0.60	0.0	0.04	14.91	0.00	2.021	11.19	0.85	6.7	93.3	0.0	0.90	0.36	0.86	0.85	1.78	110751	14074	55	0	42	0	0	logfile
✔	7W38	32273	2024-02-13	2021-11-25	3.1	4.31	—	2.8	0.004	0.80	0.0	0.05	14.03	0.01	1.750	5.47	0.18	5.7	94.2	0.1	-0.59	0.84	0.80	2.24	2.8	0.004	0.59	0.0	0.04	15.21	0.00	1.825	10.22	0.94	5.9	94.0	0.1	0.78	0.76	0.87	0.88	1.88	106178	13539	55	0	13	0	0	logfile

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