Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T11	25587	2024-02-14	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	0.0	0.04	10.83	0.00	2.107	3.46	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.002	0.52	0.0	0.04	13.40	0.00	2.239	3.20	1.47	2.4	97.6	0.0	1.41	0.39	0.62	0.79	3.19	8151	1132	6	0	2	0	0	logfile
✔	7W5Y	32324	2024-02-22	2021-11-30	4.2	2.66	—	2.6	0.006	0.95	0.0	0.06	19.02	0.01	2.180	10.33	0.68	9.1	90.8	0.1	-4.94	0.66	0.63	—	2.6	0.004	0.73	0.0	0.05	18.41	0.01	2.081	15.72	0.03	10.0	90.0	0.0	-2.49	0.51	0.67	0.64	—	34577	3963	9	166	0	0	0	logfile
✔	7T0V	25582	2024-02-20	2021-11-30	3.67	3.89	—	3.8	0.004	0.73	0.0	0.04	11.58	0.00	1.857	10.12	1.71	4.0	95.8	0.1	-0.13	0.80	0.77	1.76	3.8	0.004	0.68	0.0	0.04	15.12	0.00	1.843	13.37	2.56	4.0	95.9	0.1	1.06	1.39	0.81	0.79	1.22	26397	3397	13	0	20	0	0	logfile
✔	7T0Z	25585	2024-02-21	2021-11-30	3.0	2.77	2.88	2.9	0.006	0.74	1.0	0.05	14.33	0.01	1.966	7.00	0.00	5.2	94.8	0.0	-0.22	0.66	0.80	3.88	2.9	0.003	0.56	0.0	0.04	15.08	0.00	2.058	6.07	1.82	3.5	96.5	0.0	0.71	1.19	0.68	0.83	3.68	31129	1912	17	0	26	0	15348	logfile
✔	7T10	25586	2024-02-14	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.61	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.002	0.56	0.0	0.04	13.76	0.00	2.258	2.32	1.10	2.3	97.7	0.0	1.67	0.91	0.64	0.83	3.71	8429	1146	9	0	0	5	0	logfile
✔	7T0W	25583	2024-02-22	2021-11-30	3.0	3.06	2.12	3.3	0.007	0.79	0.0	0.05	14.13	0.01	1.447	10.99	0.32	5.9	94.1	0.0	-1.01	0.67	0.79	3.94	3.3	0.003	0.57	0.0	0.04	14.74	0.00	1.996	8.60	0.95	4.5	95.5	0.0	-0.06	0.58	0.66	0.80	3.80	34395	2139	16	0	24	0	16968	logfile
✔	7W5X	32323	2024-02-22	2021-11-30	3.4	2.92	—	3.2	0.006	0.80	0.0	0.05	17.75	0.01	2.257	4.65	0.35	5.8	94.2	0.1	-5.01	0.61	0.79	2.44	3.0	0.004	0.59	0.0	0.04	19.26	0.00	2.169	8.34	2.77	5.5	94.5	0.0	-1.55	1.25	0.61	0.78	1.67	34265	3965	9	150	0	0	0	logfile
✔	7W55	32314	2024-02-17	2021-11-29	2.8	2.24	—	3.0	0.005	0.72	1.0	0.06	11.82	0.00	2.126	2.62	0.50	2.1	97.9	0.0	0.64	0.73	0.73	3.93	3.0	0.003	0.59	0.0	0.04	15.52	0.01	1.977	9.08	2.18	3.2	96.8	0.0	0.75	0.73	0.74	0.76	3.64	18334	1167	6	0	0	0	9112	logfile
✔	7QDR	13923	2024-02-18	2021-11-29	3.7	3.84	3.50	3.7	0.006	0.84	0.0	0.05	14.04	0.01	2.021	12.64	0.00	5.9	94.0	0.1	-1.43	0.81	0.86	2.06	3.7	0.003	0.63	0.0	0.04	15.81	0.00	2.158	8.06	2.74	9.8	90.2	0.0	-0.12	1.15	0.80	0.84	1.60	22818	2991	4	0	0	0	0	logfile
✔	7W57	32316	2024-02-17	2021-11-29	3.2	3.16	—	3.2	0.003	0.58	0.0	0.04	11.44	0.00	1.990	3.69	0.20	2.0	98.0	0.0	0.67	0.63	0.79	3.55	3.2	0.003	0.52	0.0	0.04	14.46	0.00	1.992	6.88	1.10	3.0	97.0	0.0	1.35	1.28	0.64	0.83	3.40	18242	1159	6	0	0	0	9072	logfile
✔	7T01	25574	2024-02-13	2021-11-29	2.69	2.92	2.50	3.2	0.004	0.87	0.0	0.05	12.30	0.01	2.335	1.37	0.00	3.8	96.2	0.0	-1.08	0.71	0.83	4.37	3.2	0.005	0.95	0.0	0.05	16.08	0.01	2.182	15.95	4.56	6.2	93.8	0.0	-1.38	1.10	0.73	0.86	3.86	3343	428	3	0	0	0	0	logfile
✘	7W5A	32319	2024-02-21	2021-11-29	3.6	3.89	—	3.6	0.012	1.64	129.0	0.11	16.70	0.01	1.346	18.76	3.67	6.0	93.3	0.8	-2.96	0.66	0.62	1.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96822	12633	61	416	19	0	0	logfile
✔	7SZZ	25573	2024-02-22	2021-11-29	3.9	4.01	—	4.0	0.007	0.62	0.0	0.03	14.38	0.00	2.505	10.59	0.00	6.5	93.5	0.0	-4.42	0.72	0.86	2.41	4.0	0.004	0.86	0.0	0.04	17.57	0.00	2.168	11.43	3.51	2.6	97.4	0.0	0.54	0.65	0.72	0.84	0.86	143112	17085	804	0	0	0	0	logfile
✘	7W5B	32321	2024-02-13	2021-11-29	4.3	4.80	—	4.3	0.012	1.56	60.0	0.10	16.06	0.01	1.346	16.34	2.51	5.8	93.5	0.7	-3.06	0.65	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106538	14610	62	416	19	0	0	logfile
✔	7T02	25577	2024-02-16	2021-11-29	3.8	3.88	—	3.8	0.010	0.99	0.0	0.06	16.50	0.01	2.007	11.39	0.27	8.3	91.7	0.0	-1.67	0.77	0.82	2.04	3.8	0.002	0.59	0.0	0.04	17.73	0.00	2.175	9.38	2.14	4.4	95.6	0.0	0.12	0.35	0.76	0.81	1.51	14359	1752	4	25	5	0	0	logfile
✘	7W59	32317	2024-02-21	2021-11-29	3.6	3.96	—	3.6	0.013	1.67	139.0	0.11	16.71	0.01	1.346	16.10	3.80	5.6	93.7	0.7	-2.96	0.66	0.63	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92315	12086	56	416	18	0	0	logfile
✔	7W56	32315	2024-02-17	2021-11-29	2.9	2.28	—	2.2	0.006	0.72	1.0	0.05	11.52	0.00	2.129	5.03	0.41	3.3	96.7	0.0	0.50	0.72	0.73	3.72	2.2	0.005	0.61	0.0	0.04	15.04	0.00	1.991	9.17	1.73	5.2	94.8	0.0	0.83	1.32	0.73	0.76	3.43	17881	1145	6	0	0	0	8894	logfile
✔	7W53	32313	2024-02-17	2021-11-29	3.2	2.94	—	3.0	0.007	0.86	1.0	0.05	12.62	0.00	1.769	6.17	0.63	3.9	96.1	0.0	-0.67	0.58	0.76	3.10	3.0	0.004	0.59	0.0	0.04	15.45	0.00	1.876	9.06	1.48	3.6	96.4	0.0	0.77	0.82	0.57	0.78	2.47	17354	1109	6	0	0	0	8644	logfile
✔	7SZK	25571	2024-02-21	2021-11-28	2.94	3.14	—	3.2	0.015	0.79	0.0	0.07	14.85	0.00	1.985	31.61	0.00	6.1	93.8	0.0	0.28	0.71	0.81	2.10	3.2	0.004	0.78	0.0	0.04	16.43	0.00	2.055	15.73	0.64	5.7	94.2	0.0	0.10	1.15	0.71	0.82	2.14	29759	3683	10	36	4	0	0	logfile
✔	7W4P	32311	2024-02-13	2021-11-28	3.19	2.52	—	3.2	0.006	0.75	0.0	0.05	12.28	0.01	2.166	4.69	2.18	2.8	97.1	0.1	-0.24	0.80	0.80	2.05	3.1	0.005	0.75	3.0	0.04	14.80	0.01	1.858	9.28	2.13	3.2	96.7	0.1	1.49	1.97	0.81	0.83	2.11	54408	6904	16	0	24	0	0	logfile

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