Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PFX	13383	2024-02-16	2021-08-12	4.3	7.46	—	4.0	0.006	0.88	0.0	0.05	30.29	0.01	2.234	6.11	0.00	1.3	98.7	0.0	0.30	0.91	0.85	—	4.0	0.005	0.66	0.0	0.04	30.16	0.00	2.097	20.30	0.00	2.5	97.5	0.0	1.99	1.56	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7V4D	31708	2024-02-13	2021-08-12	3.5	3.38	—	4.0	0.003	0.54	0.0	0.05	11.89	0.00	2.234	14.44	0.00	7.1	92.9	0.0	-5.68	0.41	0.80	4.67	4.1	0.005	0.76	0.0	0.05	13.19	0.00	2.166	9.90	7.92	10.7	89.3	0.0	-4.21	1.19	0.43	0.81	4.12	2376	348	6	0	0	0	0	logfile
✔	7V48	31703	2024-02-13	2021-08-12	3.0	2.27	—	3.3	0.002	0.48	0.0	0.05	12.91	0.00	2.295	8.64	0.00	9.8	90.2	0.0	-5.61	0.37	0.75	4.10	3.3	0.004	0.65	0.0	0.05	14.15	0.00	2.253	4.89	2.65	21.3	78.7	0.0	-4.60	0.41	0.39	0.76	4.74	2598	378	6	0	0	0	0	logfile
✔	7V47	31702	2024-02-13	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	3.0	0.004	0.69	0.0	0.06	17.28	0.00	2.415	6.71	7.32	18.1	81.9	0.0	-4.31	0.34	0.44	0.80	6.12	2484	366	6	0	0	0	0	logfile
✔	7V49	31704	2024-02-13	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.75	0.0	0.05	14.90	0.00	2.443	8.42	4.88	14.9	85.1	0.0	-5.73	1.14	0.31	0.69	5.16	1221	180	3	0	0	0	0	logfile
✔	7V4C	31707	2024-02-13	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.004	0.63	0.0	0.05	17.37	0.00	2.160	5.30	11.36	11.1	88.9	0.0	-4.89	1.13	0.39	0.82	3.35	1287	186	3	0	0	0	0	logfile
✔	7RTB	24680	2024-02-14	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.005	0.66	0.0	0.04	16.95	0.00	2.201	5.31	2.99	3.2	96.8	0.0	0.82	0.67	0.68	0.83	3.90	8972	1169	7	0	0	1	0	logfile
✔	7PFV	13381	2024-02-16	2021-08-12	4.4	7.43	—	4.1	0.006	0.86	0.0	0.05	30.43	0.01	2.249	7.20	0.00	1.2	98.8	0.0	0.36	0.91	0.85	—	4.1	0.005	0.64	0.0	0.04	29.81	0.00	2.172	22.11	0.00	2.3	97.7	0.0	2.09	0.62	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7V4B	31706	2024-02-13	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.1	0.005	0.61	0.0	0.05	17.22	0.00	2.172	9.19	3.57	14.5	85.5	0.0	-4.95	0.58	0.41	0.69	2.43	3336	480	6	0	0	0	0	logfile
✔	7V4A	31705	2024-02-13	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.003	0.52	0.0	0.05	17.31	0.00	2.349	5.01	7.88	11.8	88.2	0.0	-4.26	1.59	0.42	0.82	3.59	1653	240	3	0	0	0	0	logfile
✔	7RSH	24670	2024-02-15	2021-08-11	3.0	2.76	—	3.0	0.009	1.42	0.0	0.05	19.07	0.02	2.221	8.11	0.58	8.0	92.0	0.0	-0.72	0.65	0.80	2.41	3.0	0.003	0.64	0.0	0.04	17.93	0.00	2.252	6.95	3.05	6.2	93.8	0.0	1.05	0.41	0.61	0.81	2.15	13744	1604	8	0	60	0	0	logfile
✔	7RSL	24674	2024-02-17	2021-08-11	3.45	4.21	—	3.7	0.007	0.82	0.0	0.05	13.62	0.00	2.200	11.16	0.23	4.5	95.5	0.0	-1.76	0.76	0.84	2.18	3.8	0.004	0.73	0.0	0.04	16.04	0.00	2.096	14.34	2.43	3.5	96.5	0.0	-0.02	0.69	0.75	0.86	2.09	19150	2350	10	0	0	0	0	logfile
✔	7RSN	24675	2024-02-17	2021-08-11	3.49	3.85	3.57	3.9	0.023	1.84	3.0	0.14	13.45	0.01	2.296	0.46	0.00	4.0	95.6	0.4	0.48	0.73	0.82	2.83	3.9	0.005	0.76	0.0	0.05	14.29	0.00	2.136	9.13	2.47	7.5	92.2	0.3	-0.58	3.07	0.71	0.84	2.14	19623	2310	33	0	99	0	0	logfile
✔	7V3P	31671	2024-02-20	2021-08-11	3.6	3.81	—	3.7	0.008	1.14	5.0	0.07	14.31	0.01	2.011	12.91	2.27	7.7	91.3	1.0	-2.21	0.75	0.67	1.92	3.7	0.002	0.61	0.0	0.05	14.92	0.00	2.010	6.72	0.60	7.2	92.6	0.2	-1.77	1.26	0.77	0.71	2.07	26331	1674	6	0	4	0	12814	logfile
✔	7PF5	13368	2024-02-16	2021-08-11	3.8	4.51	—	3.4	0.006	0.89	0.0	0.05	28.94	0.01	2.264	6.06	0.00	1.8	98.2	0.0	-0.59	0.87	0.80	0.89	3.4	0.004	0.65	0.0	0.04	28.73	0.00	2.129	17.28	1.15	2.3	97.7	0.0	1.08	1.24	0.87	0.81	0.67	13470	843	11	334	0	0	0	logfile
✔	7PF4	13367	2024-02-16	2021-08-11	4.0	4.72	—	3.7	0.005	0.89	0.0	0.05	29.72	0.01	2.258	6.44	0.00	2.4	97.6	0.0	-0.80	0.87	0.76	—	3.7	0.005	0.70	0.0	0.04	29.71	0.00	2.075	22.23	2.20	4.0	96.0	0.0	0.98	0.75	0.88	0.79	—	12935	768	10	334	0	0	0	logfile
✔	7PF3	13366	2024-02-16	2021-08-11	4.0	4.81	—	3.6	0.007	0.94	0.0	0.05	29.23	0.01	2.266	6.23	0.14	2.4	97.6	0.0	-0.63	0.91	0.87	—	3.6	0.005	0.69	0.0	0.04	28.75	0.00	2.177	18.69	2.02	3.0	97.0	0.0	1.60	0.57	0.91	0.87	—	13470	843	11	334	0	0	0	logfile
✔	7RSi	24672	2024-02-15	2021-08-11	4.9	7.04	5.29	7.8	0.015	1.51	0.0	0.07	12.44	0.01	2.015	5.90	0.00	4.5	94.6	0.9	-0.32	0.82	0.69	—	7.7	0.003	0.57	0.0	0.04	12.93	0.00	1.862	14.47	0.00	6.5	93.5	0.0	-0.14	1.21	0.82	0.68	—	10886	686	2	0	2	0	5400	logfile
✔	7PFD	13372	2024-02-16	2021-08-11	4.4	7.91	—	3.8	0.006	0.92	0.0	0.05	29.94	0.01	2.245	6.72	0.00	2.1	97.9	0.0	-0.57	0.89	0.77	—	3.8	0.005	0.71	0.0	0.04	30.70	0.01	2.088	26.67	0.00	3.6	96.4	0.0	0.24	1.42	0.89	0.80	—	13675	843	11	344	0	0	0	logfile
✔	7RSQ	24677	2024-02-13	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.52	0.0	0.03	15.34	0.00	2.233	2.76	0.96	2.6	97.4	0.0	2.14	1.75	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile

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