Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PFF	13374	2024-02-16	2021-08-11	4.3	7.61	—	3.8	0.006	0.92	0.0	0.05	30.35	0.01	2.286	8.26	0.00	1.6	98.4	0.0	-0.07	0.90	0.79	—	3.7	0.005	0.72	0.0	0.04	30.99	0.00	2.198	27.46	0.00	3.7	96.3	0.0	0.66	1.83	0.89	0.81	—	12935	768	10	334	0	0	0	logfile
✔	7PF1	13364	2024-02-24	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.25	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.005	0.66	0.0	0.04	17.28	0.00	1.883	11.99	0.19	2.3	97.7	0.0	4.45	1.39	0.78	0.83	7.09	41646	4176	72	0	263	7207	0	logfile
✔	7RSN	24675	2024-02-17	2021-08-11	3.49	3.85	3.57	3.9	0.023	1.84	3.0	0.14	13.45	0.01	2.296	0.46	0.00	4.0	95.6	0.4	0.48	0.73	0.82	2.83	3.9	0.005	0.76	0.0	0.05	14.29	0.00	2.136	9.13	2.47	7.5	92.2	0.3	-0.58	3.07	0.71	0.84	2.14	19623	2310	33	0	99	0	0	logfile
✔	7V3V	31685	2024-02-17	2021-08-11	2.9	2.82	—	2.8	0.004	0.82	2.0	0.05	13.45	0.01	2.042	6.26	0.07	2.6	97.3	0.0	-0.55	0.62	0.70	2.44	2.8	0.003	0.57	0.0	0.04	17.08	0.00	1.914	9.03	2.84	2.3	97.7	0.0	0.63	1.29	0.72	0.79	2.27	68356	8587	28	0	36	0	0	logfile
✔	7RSQ	24677	2024-02-13	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.52	0.0	0.03	15.34	0.00	2.233	2.76	0.96	2.6	97.4	0.0	2.14	1.75	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile
✔	7PF3	13366	2024-02-16	2021-08-11	4.0	4.81	—	3.6	0.007	0.94	0.0	0.05	29.23	0.01	2.266	6.23	0.14	2.4	97.6	0.0	-0.63	0.91	0.87	—	3.6	0.005	0.69	0.0	0.04	28.75	0.00	2.177	18.69	2.02	3.0	97.0	0.0	1.60	0.57	0.91	0.87	—	13470	843	11	334	0	0	0	logfile
✔	7PF6	13369	2024-02-16	2021-08-11	4.0	4.89	—	3.7	0.006	0.99	0.0	0.06	29.58	0.01	2.268	7.80	0.00	1.9	98.1	0.0	-0.75	0.87	0.76	—	3.7	0.004	0.77	0.0	0.06	29.75	0.00	2.032	22.11	1.73	2.7	97.3	0.0	0.65	1.65	0.87	0.77	—	13470	843	11	334	0	0	0	logfile
✔	7PFD	13372	2024-02-16	2021-08-11	4.4	7.91	—	3.8	0.006	0.92	0.0	0.05	29.94	0.01	2.245	6.72	0.00	2.1	97.9	0.0	-0.57	0.89	0.77	—	3.8	0.005	0.71	0.0	0.04	30.70	0.01	2.088	26.67	0.00	3.6	96.4	0.0	0.24	1.42	0.89	0.80	—	13675	843	11	344	0	0	0	logfile
✔	7RSL	24674	2024-02-17	2021-08-11	3.45	4.21	—	3.7	0.007	0.82	0.0	0.05	13.62	0.00	2.200	11.16	0.23	4.5	95.5	0.0	-1.76	0.76	0.84	2.18	3.8	0.004	0.73	0.0	0.04	16.04	0.00	2.096	14.34	2.43	3.5	96.5	0.0	-0.02	0.69	0.75	0.86	2.09	19150	2350	10	0	0	0	0	logfile
✔	7PEo	13355	2024-02-20	2021-08-11	4.37	6.48	—	4.4	0.009	1.63	0.0	0.13	22.19	0.02	2.206	4.00	0.60	2.5	97.5	0.0	-2.52	0.90	0.86	—	4.3	0.002	0.62	0.0	0.04	11.40	0.00	2.092	8.37	0.09	2.6	97.4	0.0	1.95	1.36	0.91	0.89	—	26278	3388	42	0	210	0	0	logfile
✔	7PF5	13368	2024-02-16	2021-08-11	3.8	4.51	—	3.4	0.006	0.89	0.0	0.05	28.94	0.01	2.264	6.06	0.00	1.8	98.2	0.0	-0.59	0.87	0.80	0.89	3.4	0.004	0.65	0.0	0.04	28.73	0.00	2.129	17.28	1.15	2.3	97.7	0.0	1.08	1.24	0.87	0.81	0.67	13470	843	11	334	0	0	0	logfile
✔	7PF4	13367	2024-02-16	2021-08-11	4.0	4.72	—	3.7	0.005	0.89	0.0	0.05	29.72	0.01	2.258	6.44	0.00	2.4	97.6	0.0	-0.80	0.87	0.76	—	3.7	0.005	0.70	0.0	0.04	29.71	0.00	2.075	22.23	2.20	4.0	96.0	0.0	0.98	0.75	0.88	0.79	—	12935	768	10	334	0	0	0	logfile
✔	7V3L	31683	2024-02-23	2021-08-10	3.47	2.97	—	2.8	0.012	1.55	41.0	0.10	14.53	0.01	2.080	14.40	7.18	10.2	87.9	1.9	-1.28	0.73	0.61	1.27	2.8	0.007	0.94	0.0	0.05	15.49	0.01	1.955	19.35	2.49	12.1	87.6	0.3	-1.85	1.40	0.80	0.75	1.54	36238	4710	9	0	0	0	0	logfile
✔	7V2W	31669	2024-02-18	2021-08-10	3.2	3.43	—	3.4	0.006	1.08	0.0	0.05	15.89	0.01	2.276	2.96	0.24	7.1	92.9	0.1	-6.70	0.74	0.82	2.09	3.4	0.004	0.66	0.0	0.04	17.24	0.00	2.141	6.20	2.07	6.9	93.1	0.0	-1.65	0.63	0.75	0.83	1.44	21619	2655	5	0	0	0	0	logfile
✘	7V2Y	31670	2024-02-18	2021-08-10	3.4	3.56	—	3.5	0.005	0.96	0.0	0.05	16.29	0.01	2.276	3.85	0.34	7.5	92.4	0.1	-6.23	0.69	0.78	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23097	2846	6	0	0	0	0	logfile
✔	7RRP	24665	2024-02-18	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.004	0.66	0.0	0.04	14.32	0.00	2.044	2.00	0.61	1.8	98.2	0.0	3.97	0.06	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	7PE8	13348	2024-02-21	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.47	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.72	0.00	2.182	7.39	1.79	4.0	96.0	0.0	0.60	0.47	0.80	0.83	1.95	29291	3832	8	0	3	0	0	logfile
✔	7V2L	31655	2024-02-13	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	23.68	0.00	2.214	5.68	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.006	0.64	0.0	0.04	23.59	0.00	2.079	8.07	1.73	7.2	92.7	0.1	-0.22	0.26	0.79	0.88	2.07	53410	2621	24	1507	2	0	0	logfile
✔	7V2M	31656	2024-02-13	2021-08-09	3.4	3.28	3.35	3.1	0.008	1.15	3.0	0.11	23.60	0.00	2.232	6.24	0.33	6.5	93.2	0.3	-0.70	0.80	0.86	2.18	3.1	0.009	0.83	0.0	0.05	23.68	0.01	2.010	12.74	2.77	8.1	91.8	0.0	-0.75	0.33	0.80	0.87	1.99	55229	2909	25	1486	2	0	0	logfile
✔	7RRA	24657	2024-02-14	2021-08-09	4.4	4.79	—	3.5	0.003	0.59	0.0	0.04	13.75	0.00	2.261	9.42	0.00	3.0	97.0	0.0	1.98	0.62	0.57	—	3.6	0.003	0.61	0.0	0.04	14.12	0.00	2.255	14.49	0.00	3.8	96.2	0.0	1.41	1.89	0.65	0.62	—	9608	1204	2	0	0	0	0	logfile

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