Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PEC	13352	2024-02-21	2021-08-09	4.24	4.75	—	4.4	0.002	0.49	0.0	0.04	14.48	0.00	2.238	5.40	4.99	4.6	95.4	0.0	-1.94	0.73	0.78	—	4.4	0.003	0.63	0.0	0.04	13.29	0.00	2.093	10.73	0.00	3.1	96.9	0.0	0.73	0.89	0.74	0.78	—	30911	3822	5	0	57	0	0	logfile
✔	7V2L	31655	2024-02-13	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	23.68	0.00	2.214	5.68	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.006	0.64	0.0	0.04	23.59	0.00	2.079	8.07	1.73	7.2	92.7	0.1	-0.22	0.26	0.79	0.88	2.07	53410	2621	24	1507	2	0	0	logfile
✘	7RR8	24655	2024-02-19	2021-08-09	3.51	3.20	3.53	3.1	0.005	0.79	3.0	0.05	14.59	0.00	2.213	7.81	0.12	2.9	97.1	0.0	0.59	0.75	0.85	3.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23929	3075	6	0	26	0	0	logfile
✔	7V2N	31657	2024-02-25	2021-08-09	3.6	3.38	3.41	3.1	0.008	1.21	2.0	0.11	24.27	0.00	2.085	8.71	0.63	7.0	92.7	0.3	-1.20	0.82	0.84	1.75	3.1	0.005	0.66	0.0	0.04	24.04	0.00	1.964	13.36	3.36	6.7	93.2	0.1	-0.46	0.35	0.81	0.84	1.50	51020	2626	24	1394	2	0	0	logfile
✔	7V2P	31659	2024-02-25	2021-08-09	3.3	3.22	3.17	3.1	0.008	1.09	3.0	0.10	23.04	0.00	2.228	5.61	0.27	6.4	93.4	0.2	-0.50	0.83	0.89	2.28	3.1	0.007	0.70	0.0	0.04	22.86	0.01	2.020	7.96	1.98	7.0	92.9	0.1	-0.13	2.77	0.84	0.90	2.27	51135	2639	24	1394	2	0	0	logfile
✔	7RRA	24657	2024-02-14	2021-08-09	4.4	4.79	—	3.5	0.003	0.59	0.0	0.04	13.75	0.00	2.261	9.42	0.00	3.0	97.0	0.0	1.98	0.62	0.57	—	3.6	0.003	0.61	0.0	0.04	14.12	0.00	2.255	14.49	0.00	3.8	96.2	0.0	1.41	1.89	0.65	0.62	—	9608	1204	2	0	0	0	0	logfile
✔	7V2o	31658	2024-02-13	2021-08-09	3.5	3.22	3.31	3.0	0.008	1.12	2.0	0.10	23.97	0.00	2.203	6.79	0.18	5.3	94.5	0.2	-0.53	0.81	0.84	2.00	3.0	0.007	0.71	0.0	0.04	23.82	0.01	2.071	11.25	2.41	6.9	93.1	0.1	-0.28	0.36	0.80	0.83	1.94	53005	2624	24	1487	2	0	0	logfile
✘	7PE7	13347	2024-02-14	2021-08-09	3.41	3.76	—	3.7	0.002	0.46	0.0	0.04	9.06	0.00	2.205	4.36	0.98	3.3	96.6	0.1	-0.02	0.78	0.80	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58582	7664	16	0	6	0	0	logfile
✔	7PDZ	13343	2024-02-18	2021-08-09	3.8	3.98	3.69	3.7	0.023	1.96	23.0	0.17	15.06	0.01	1.820	4.89	0.21	5.8	94.2	0.0	-2.08	0.79	0.77	1.78	3.8	0.003	0.74	0.0	0.04	16.04	0.00	1.859	13.51	1.85	3.3	96.7	0.0	0.40	0.98	0.80	0.80	1.57	22185	2800	19	0	21	0	0	logfile
✔	7V2M	31656	2024-02-13	2021-08-09	3.4	3.28	3.35	3.1	0.008	1.15	3.0	0.11	23.60	0.00	2.232	6.24	0.33	6.5	93.2	0.3	-0.70	0.80	0.86	2.18	3.1	0.009	0.83	0.0	0.05	23.68	0.01	2.010	12.74	2.77	8.1	91.8	0.0	-0.75	0.33	0.80	0.87	1.99	55229	2909	25	1486	2	0	0	logfile
✔	7PE8	13348	2024-02-21	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.47	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.72	0.00	2.182	7.39	1.79	4.0	96.0	0.0	0.60	0.47	0.80	0.83	1.95	29291	3832	8	0	3	0	0	logfile
✔	7V2Q	31660	2024-02-13	2021-08-09	3.24	3.12	3.13	3.0	0.008	1.14	2.0	0.10	22.99	0.00	2.189	6.75	0.16	6.4	93.6	0.1	-1.01	0.82	0.86	1.80	2.9	0.006	0.71	0.0	0.04	23.19	0.01	2.112	10.77	3.96	6.8	93.1	0.0	-0.41	1.47	0.82	0.88	1.95	52904	2875	25	1391	2	0	0	logfile
✔	7RR6	24653	2024-02-19	2021-08-09	3.1	3.36	3.18	3.3	0.008	1.21	12.0	0.08	16.03	0.01	2.102	14.14	0.44	5.0	95.0	0.0	-1.19	0.74	0.84	3.06	3.3	0.003	0.55	0.0	0.04	15.58	0.00	2.146	7.75	1.54	2.8	97.2	0.0	0.89	0.95	0.73	0.87	2.64	23821	3063	6	0	35	0	0	logfile
✔	7RQV	24637	2024-02-22	2021-08-08	3.45	3.65	—	3.6	0.011	0.97	0.0	0.06	18.05	0.01	2.226	7.82	0.00	4.4	95.6	0.0	-0.71	0.63	0.74	2.29	3.7	0.005	0.55	0.0	0.04	15.97	0.00	2.132	7.79	1.03	6.2	93.8	0.0	-0.34	0.43	0.65	0.78	2.29	34298	2320	8	0	22	0	16236	logfile
✔	7RQY	24640	2024-02-22	2021-08-08	3.04	3.28	—	3.3	0.011	0.94	0.0	0.05	17.88	0.00	2.205	7.95	0.00	2.7	97.3	0.0	-0.70	0.63	0.71	2.87	3.3	0.004	0.55	0.0	0.03	16.56	0.00	2.162	4.68	0.56	3.3	96.7	0.0	0.51	0.45	0.63	0.80	2.21	32052	2100	8	0	16	0	15388	logfile
✔	7RQZ	24641	2024-02-22	2021-08-08	3.32	3.07	—	3.3	0.011	0.96	0.0	0.06	18.59	0.00	2.073	6.78	0.00	4.8	95.2	0.0	0.73	0.59	0.73	1.63	3.3	0.004	0.47	0.0	0.03	17.15	0.00	2.144	5.21	1.02	3.7	96.3	0.0	0.95	0.32	0.60	0.75	1.39	32740	2128	8	0	20	0	15608	logfile
✔	7RQX	24639	2024-02-21	2021-08-08	3.36	3.59	—	3.5	0.012	1.06	0.0	0.06	19.02	0.01	2.227	8.03	0.00	3.4	96.6	0.0	-0.29	0.67	0.75	2.39	3.5	0.002	0.46	0.0	0.03	16.04	0.00	2.042	7.71	1.34	3.9	96.1	0.0	0.92	0.48	0.67	0.80	2.25	30450	2016	8	0	26	0	14344	logfile
✔	7RQW	24638	2024-02-22	2021-08-08	3.11	3.40	—	3.5	0.011	0.99	0.0	0.06	17.95	0.00	2.042	7.24	0.00	4.4	95.6	0.0	0.31	0.55	0.69	2.95	3.5	0.003	0.46	0.0	0.03	16.96	0.00	1.949	7.74	1.50	3.6	96.4	0.0	1.03	0.37	0.51	0.68	2.77	32984	2128	8	0	20	0	15804	logfile
✔	7RR0	24649	2024-02-13	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.28	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.004	0.74	0.0	0.04	15.98	0.00	2.219	11.01	2.53	4.3	95.7	0.0	0.10	1.25	0.77	0.80	2.95	3297	422	4	0	1	0	0	logfile
✔	7RQU	24636	2024-02-23	2021-08-08	3.05	3.32	—	3.3	0.012	1.15	0.0	0.06	22.09	0.00	2.334	3.79	0.00	3.2	96.8	0.0	1.69	0.63	0.76	2.73	3.3	0.003	0.46	0.0	0.03	15.88	0.00	2.362	3.22	1.38	3.7	96.3	0.0	1.91	0.28	0.64	0.80	2.64	35602	2416	8	0	38	0	16568	logfile

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