Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PBX	13308	2024-02-14	2021-08-02	3.43	3.70	3.43	3.1	0.032	2.53	206.0	0.21	19.43	0.02	0.597	32.75	11.71	3.1	95.3	1.6	1.29	0.69	0.65	1.83	3.2	0.003	0.75	0.0	0.04	17.10	0.00	1.907	13.75	1.35	4.6	95.3	0.1	1.35	1.42	0.90	0.86	2.10	59472	8015	35	0	28	0	0	logfile
✔	7PBN	13296	2024-02-21	2021-08-02	3.2	3.35	—	3.3	0.004	0.73	0.0	0.04	14.92	0.01	1.890	1.18	0.06	0.9	99.1	0.0	-0.88	0.78	0.84	3.09	3.2	0.003	0.58	0.0	0.04	17.02	0.00	1.821	3.21	1.52	2.2	97.8	0.0	1.14	1.34	0.80	0.86	2.60	32074	1968	16	30	9	0	15818	logfile
✔	7FiY	31606	2024-02-14	2021-08-01	3.4	3.64	—	3.6	0.004	0.82	0.0	0.06	8.34	0.01	2.275	3.69	0.00	2.6	97.4	0.0	-1.10	0.67	0.75	2.44	3.6	0.003	0.56	0.0	0.04	13.81	0.00	2.137	8.66	2.85	2.4	97.6	0.0	1.28	1.70	0.71	0.80	1.97	9367	1152	7	0	6	0	0	logfile
✔	7FiZ	31607	2024-02-23	2021-08-01	3.28	3.80	—	3.6	0.008	1.14	3.0	0.06	11.03	0.01	2.212	6.62	0.31	6.9	92.9	0.2	-4.01	0.66	0.60	1.78	3.6	0.004	0.70	0.0	0.04	14.27	0.00	2.095	12.75	1.81	6.3	93.7	0.1	-0.79	0.79	0.71	0.77	1.33	36970	4674	12	0	27	0	0	logfile
✔	7FiM	31603	2024-02-14	2021-07-31	3.4	3.76	—	3.8	0.004	0.83	0.0	0.05	13.92	0.01	2.226	7.19	0.41	2.3	97.7	0.0	-2.72	0.56	0.64	1.94	3.8	0.003	0.61	0.0	0.04	16.50	0.00	2.181	9.28	3.67	3.5	96.5	0.0	-0.60	0.79	0.70	0.81	1.51	9213	1157	6	0	0	0	0	logfile
✔	7FiE	31590	2024-02-23	2021-07-31	2.36	3.35	—	3.1	0.008	1.11	3.0	0.06	11.62	0.01	2.243	4.11	0.89	4.2	95.7	0.2	-3.44	0.79	0.79	3.14	3.0	0.005	0.68	1.0	0.04	14.08	0.00	2.039	7.68	1.50	3.8	96.2	0.0	0.19	0.55	0.75	0.87	2.59	36997	4674	13	0	28	0	0	logfile
✔	7FiH	31597	2024-02-15	2021-07-31	3.2	2.63	—	3.5	0.005	0.76	1.0	0.05	13.98	0.00	1.962	8.33	0.17	3.3	96.6	0.1	-0.18	0.75	0.71	1.63	3.4	0.004	0.95	0.0	0.04	16.68	0.00	2.090	12.87	2.67	4.4	95.6	0.0	0.23	1.28	0.79	0.78	1.82	10853	1381	7	0	1	0	0	logfile
✔	7Fii	31598	2024-02-14	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.61	0.0	0.04	9.62	0.00	2.261	5.54	0.00	3.8	96.2	0.0	0.54	0.75	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	7FiD	31589	2024-02-23	2021-07-31	2.44	3.37	—	3.1	0.010	1.10	0.0	0.06	11.37	0.01	2.165	3.92	0.36	5.7	94.1	0.2	-3.56	0.79	0.79	3.22	3.1	0.005	0.70	0.0	0.04	13.75	0.00	2.024	7.76	1.50	4.8	95.2	0.0	-0.08	0.52	0.74	0.85	2.51	36992	4674	13	0	28	0	0	logfile
✔	7FiG	31596	2024-02-16	2021-07-31	3.9	4.18	—	4.1	0.007	1.11	0.0	0.06	13.42	0.01	2.011	3.48	0.00	5.3	94.7	0.0	-2.06	0.65	0.76	1.78	4.1	0.003	0.85	0.0	0.04	16.09	0.00	2.099	15.51	3.92	3.3	96.7	0.0	-0.13	2.50	0.67	0.79	0.94	12839	1632	10	0	5	0	0	logfile
✔	7FiK	31600	2024-02-15	2021-07-31	3.7	3.41	—	2.2	0.007	0.98	1.0	0.05	9.93	0.00	1.868	3.44	3.73	6.0	93.8	0.2	-2.13	0.50	0.52	1.35	2.2	0.004	0.63	0.0	0.04	11.28	0.00	1.938	6.39	2.55	5.4	94.6	0.0	1.43	0.64	0.60	0.68	1.69	116163	19039	32	0	722	0	0	logfile
✔	7FiJ	31599	2024-02-13	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.006	0.86	0.0	0.05	12.15	0.00	2.164	13.33	11.25	16.5	83.5	0.0	-1.70	0.74	0.62	0.56	2.72	3061	561	1	0	0	0	0	logfile
✔	7FiL	31602	2024-02-13	2021-07-31	3.0	2.84	—	3.6	0.008	1.05	2.0	0.06	18.46	0.01	2.213	19.35	8.76	7.7	91.1	1.2	-1.82	0.71	0.75	1.53	3.5	0.003	0.75	0.0	0.04	18.65	0.00	2.212	10.75	6.22	7.1	92.7	0.2	1.41	1.54	0.71	0.76	0.78	3993	504	1	0	0	0	0	logfile
✔	7RoG	24594	2024-02-19	2021-07-30	3.8	4.00	—	3.7	0.007	0.74	0.0	0.05	12.33	0.01	2.355	14.52	1.33	5.4	94.6	0.0	1.76	0.67	0.85	1.80	3.8	0.004	0.73	0.0	0.04	14.62	0.01	2.140	11.30	1.19	4.0	96.0	0.0	3.11	1.65	0.66	0.84	1.80	137200	18800	200	0	0	0	0	logfile
✔	7Ro5	24588	2024-02-19	2021-07-30	4.1	4.27	—	3.9	0.005	0.85	0.0	0.05	13.48	0.01	2.235	12.45	4.00	4.3	95.7	0.0	1.05	0.68	0.85	—	3.9	0.004	0.74	0.0	0.05	11.68	0.01	2.269	11.68	0.00	5.0	95.0	0.0	2.85	0.54	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoE	24593	2024-02-19	2021-07-30	3.7	3.80	—	3.5	0.006	0.69	0.0	0.04	12.63	0.01	2.266	11.99	4.00	6.7	93.3	0.0	1.70	0.67	0.86	1.96	3.5	0.004	0.73	0.0	0.04	14.73	0.01	2.049	9.76	1.65	5.9	94.1	0.1	3.36	0.50	0.67	0.85	1.73	137200	18800	200	0	0	0	0	logfile
✔	7RNX	24582	2024-02-13	2021-07-30	3.42	3.46	—	3.4	0.013	1.07	0.0	0.06	14.18	0.01	2.266	4.77	0.44	5.2	94.8	0.0	-4.11	0.69	0.84	1.92	3.5	0.003	0.59	0.0	0.04	15.33	0.00	2.224	9.04	3.24	3.3	96.7	0.0	1.31	0.37	0.68	0.85	2.08	6758	900	2	0	0	0	0	logfile
✔	7Ro0	24584	2024-02-13	2021-07-30	3.75	3.86	—	3.8	0.008	1.03	0.0	0.06	14.95	0.01	2.202	5.07	0.74	6.3	93.7	0.0	-5.18	0.69	0.84	1.25	3.8	0.003	0.65	0.0	0.04	16.09	0.00	2.013	7.47	3.70	4.3	95.7	0.0	-0.33	0.46	0.68	0.83	0.74	6742	898	2	0	0	0	0	logfile
✔	7RoD	24592	2024-02-20	2021-07-30	3.8	4.39	—	3.9	0.004	0.70	0.0	0.05	11.72	0.01	2.388	12.51	0.00	4.3	95.7	0.0	2.79	0.69	0.87	2.22	4.0	0.004	0.79	0.0	0.04	14.47	0.01	2.204	10.61	1.87	6.1	93.9	0.0	3.23	0.51	0.70	0.87	1.68	139258	19082	203	0	0	0	0	logfile
✔	7RoB	24590	2024-02-19	2021-07-30	3.9	4.43	—	4.1	0.004	0.71	0.0	0.04	13.08	0.01	2.151	11.28	4.00	4.3	95.7	0.0	1.28	0.68	0.85	2.11	4.1	0.004	0.89	0.0	0.05	14.51	0.01	2.070	12.30	2.01	5.7	94.3	0.0	2.79	1.64	0.68	0.85	1.53	137200	18800	200	0	0	0	0	logfile

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