Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Ro0	24584	2024-02-13	2021-07-30	3.75	3.86	—	3.8	0.008	1.03	0.0	0.06	14.95	0.01	2.202	5.07	0.74	6.3	93.7	0.0	-5.18	0.69	0.84	1.25	3.8	0.003	0.65	0.0	0.04	16.09	0.00	2.013	7.47	3.70	4.3	95.7	0.0	-0.33	0.46	0.68	0.83	0.74	6742	898	2	0	0	0	0	logfile
✔	7Roi	24597	2024-02-20	2021-07-30	4.3	4.43	—	4.1	0.004	0.66	0.0	0.05	12.41	0.01	2.400	9.73	1.33	4.3	95.7	0.0	1.63	0.67	0.85	—	4.1	0.004	0.75	0.0	0.05	11.54	0.01	2.166	10.86	0.00	4.1	95.9	0.0	2.70	0.61	0.67	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoH	24595	2024-02-19	2021-07-30	4.0	4.01	—	3.8	0.005	0.67	0.0	0.04	12.43	0.01	2.350	11.51	2.67	5.4	94.6	0.0	0.83	0.67	0.85	—	3.8	0.004	0.74	0.0	0.04	14.63	0.01	2.200	10.53	2.01	5.4	94.6	0.0	3.00	1.23	0.66	0.84	—	137200	18800	200	0	0	0	0	logfile
✔	7Ro3	24586	2024-02-19	2021-07-30	4.8	4.78	—	4.4	0.004	0.65	0.0	0.05	12.47	0.01	2.358	11.99	1.33	4.3	95.7	0.0	1.70	0.67	0.84	—	4.4	0.004	0.73	0.0	0.05	11.54	0.01	2.205	18.66	0.00	6.5	93.5	0.0	1.30	2.09	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoD	24592	2024-02-20	2021-07-30	3.8	4.39	—	3.9	0.004	0.70	0.0	0.05	11.72	0.01	2.388	12.51	0.00	4.3	95.7	0.0	2.79	0.69	0.87	2.22	4.0	0.004	0.79	0.0	0.04	14.47	0.01	2.204	10.61	1.87	6.1	93.9	0.0	3.23	0.51	0.70	0.87	1.68	139258	19082	203	0	0	0	0	logfile
✔	7RoB	24590	2024-02-19	2021-07-30	3.9	4.43	—	4.1	0.004	0.71	0.0	0.04	13.08	0.01	2.151	11.28	4.00	4.3	95.7	0.0	1.28	0.68	0.85	2.11	4.1	0.004	0.89	0.0	0.05	14.51	0.01	2.070	12.30	2.01	5.7	94.3	0.0	2.79	1.64	0.68	0.85	1.53	137200	18800	200	0	0	0	0	logfile
✔	7FHN	31587	2024-02-17	2021-07-29	3.3	3.55	—	3.4	0.004	0.65	0.0	0.04	13.87	0.00	2.107	10.58	0.09	3.4	96.6	0.0	1.66	0.73	0.76	2.66	3.4	0.003	0.63	0.0	0.04	16.51	0.00	2.126	12.17	1.73	2.7	97.3	0.0	2.41	0.56	0.75	0.80	2.02	10648	1294	4	0	6	0	0	logfile
✔	7FHo	31588	2024-02-17	2021-07-29	2.8	2.98	—	3.1	0.002	0.57	0.0	0.04	12.96	0.00	2.179	6.20	0.17	3.1	96.9	0.0	1.34	0.64	0.80	3.27	3.0	0.003	0.57	0.0	0.04	15.70	0.00	2.126	6.67	0.78	2.8	97.2	0.0	2.73	1.10	0.68	0.85	3.07	10648	1294	4	0	6	0	0	logfile
✔	7FH1	31584	2024-02-15	2021-07-29	3.34	3.67	—	3.6	0.009	1.20	9.0	0.07	21.25	0.02	2.200	19.78	3.15	14.2	85.8	0.0	-3.88	0.76	0.84	3.13	3.6	0.003	0.74	0.0	0.04	15.90	0.00	2.178	7.02	2.15	8.9	91.1	0.0	-0.93	1.97	0.75	0.88	2.69	13672	1748	10	0	22	0	0	logfile
✔	7FHL	31586	2024-02-16	2021-07-29	3.1	3.71	—	3.6	0.002	0.55	0.0	0.03	12.50	0.00	2.150	6.83	0.00	1.2	98.8	0.0	1.13	0.70	0.81	1.99	3.6	0.003	0.57	0.0	0.04	14.72	0.00	2.153	7.92	2.19	2.2	97.8	0.0	2.27	0.44	0.69	0.82	1.64	11058	1326	6	0	28	0	0	logfile
✔	7PAG	13269	2024-02-13	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.81	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.01	0.0	0.05	16.56	0.00	2.166	19.75	3.20	9.1	90.9	0.0	-3.22	1.27	0.33	0.68	—	4040	509	1	0	4	0	0	logfile
✔	7FHK	31585	2024-02-16	2021-07-29	3.3	3.56	—	3.6	0.004	0.60	0.0	0.04	12.53	0.00	2.210	8.33	0.00	2.1	97.9	0.0	1.22	0.66	0.83	2.28	3.6	0.003	0.59	0.0	0.04	14.78	0.00	2.243	7.42	1.18	3.1	96.9	0.0	2.44	0.45	0.65	0.83	2.35	11058	1326	6	0	28	0	0	logfile
✔	7RNN	24580	2024-02-13	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	14.96	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.005	0.65	0.0	0.04	15.49	0.00	2.242	6.08	1.91	1.9	98.1	0.0	0.44	0.48	0.49	0.87	4.00	4000	540	2	0	2	0	0	logfile
✔	7PAF	13268	2024-02-13	2021-07-29	3.75	4.06	—	4.0	0.004	0.68	0.0	0.04	13.22	0.00	2.247	13.36	0.00	3.8	95.9	0.3	-2.72	0.67	0.76	2.36	4.0	0.004	0.74	0.0	0.04	16.16	0.00	2.231	15.83	3.48	5.0	95.0	0.0	0.02	0.70	0.67	0.76	1.60	6005	780	4	0	1	0	0	logfile
✔	7P9V	13267	2024-02-13	2021-07-28	3.4	3.60	3.36	3.5	0.005	0.82	0.0	0.05	15.25	0.01	2.104	15.53	0.00	11.5	88.5	0.0	-2.67	0.62	0.78	1.97	3.5	0.003	0.70	0.0	0.04	15.93	0.00	2.150	11.85	3.08	8.4	91.6	0.0	-1.12	1.27	0.64	0.80	1.69	7286	919	6	0	8	0	0	logfile
✘	7RMP	24577	2024-02-22	2021-07-28	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32519	4128	12	0	19	41	0	logfile
✔	7P9U	13266	2024-02-13	2021-07-28	3.7	3.88	3.67	3.8	0.003	0.68	0.0	0.04	14.10	0.00	2.188	11.55	0.00	6.8	92.8	0.4	1.01	0.51	0.75	1.02	3.8	0.003	0.74	0.0	0.04	16.29	0.00	2.140	12.18	2.80	6.6	93.2	0.2	0.60	0.38	0.52	0.76	1.15	3943	503	2	0	0	0	0	logfile
✔	7RMi	24572	2024-02-14	2021-07-27	3.2	3.78	3.15	3.7	0.004	0.84	0.0	0.05	12.68	0.01	2.296	4.36	0.00	3.4	96.6	0.0	-1.03	0.69	0.72	2.32	3.7	0.003	0.58	0.0	0.04	14.49	0.00	2.202	7.94	1.71	2.8	97.2	0.0	0.64	0.96	0.66	0.77	2.11	7205	960	6	0	1	0	0	logfile
✔	7FGi	31582	2024-02-24	2021-07-27	2.51	2.92	—	2.7	0.012	0.87	0.0	0.05	16.88	0.00	1.814	1.37	2.16	3.0	97.0	0.0	-0.36	0.77	0.79	3.39	2.7	0.002	0.50	0.0	0.04	16.77	0.00	2.197	1.32	0.81	1.6	98.4	0.0	0.54	0.32	0.85	0.91	3.87	42288	5256	24	24	36	0	0	logfile
✔	7FGG	31580	2024-02-24	2021-07-27	2.19	2.26	—	2.2	0.010	1.08	0.0	0.06	17.52	0.01	2.005	2.63	2.08	3.8	96.2	0.0	-0.12	0.76	0.80	5.14	2.2	0.003	0.65	0.0	0.05	17.51	0.00	1.964	1.92	1.88	3.3	96.7	0.0	0.62	0.30	0.80	0.89	5.06	45132	5424	36	0	36	1764	0	logfile

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