Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RMH	24570	2024-02-14	2021-07-27	3.1	4.02	3.03	3.9	0.004	0.75	0.0	0.05	13.42	0.01	2.290	2.56	0.00	4.1	95.9	0.0	-1.32	0.74	0.80	2.69	3.9	0.002	0.54	0.0	0.04	15.06	0.00	2.199	4.84	1.24	3.0	96.9	0.1	0.68	0.54	0.66	0.79	2.21	7434	986	6	0	1	0	0	logfile
✔	7FGH	31581	2024-02-24	2021-07-27	2.18	2.32	—	2.3	0.009	1.06	0.0	0.06	16.27	0.01	2.118	1.61	1.31	3.8	96.2	0.0	-0.25	0.77	0.80	5.03	2.3	0.003	0.60	0.0	0.04	16.42	0.00	2.228	1.90	1.15	2.7	97.3	0.0	0.32	1.24	0.82	0.89	4.71	44532	5448	36	12	12	1416	0	logfile
✔	7FGi	31582	2024-02-24	2021-07-27	2.51	2.92	—	2.7	0.012	0.87	0.0	0.05	16.88	0.00	1.814	1.37	2.16	3.0	97.0	0.0	-0.36	0.77	0.79	3.39	2.7	0.002	0.50	0.0	0.04	16.77	0.00	2.197	1.32	0.81	1.6	98.4	0.0	0.54	0.32	0.85	0.91	3.87	42288	5256	24	24	36	0	0	logfile
✔	7P9B	13261	2024-02-14	2021-07-26	2.45	2.64	2.53	2.6	0.009	0.77	0.0	0.05	10.59	0.01	1.733	7.36	0.93	2.5	97.5	0.0	-1.21	0.79	0.88	6.15	2.6	0.004	0.55	0.0	0.04	15.00	0.00	2.106	6.15	1.32	2.3	97.7	0.0	0.98	0.43	0.81	0.91	5.30	60290	7550	10	0	0	0	0	logfile
✔	7RLo	24535	2024-02-20	2021-07-26	2.6	3.29	—	3.2	0.002	0.49	0.0	0.04	14.09	0.00	2.132	5.83	3.01	4.4	95.6	0.1	-2.08	0.78	0.85	2.76	3.2	0.007	0.72	0.0	0.05	15.30	0.00	2.175	7.46	2.25	5.2	94.7	0.1	0.37	0.98	0.76	0.86	3.64	28707	3670	12	0	0	0	0	logfile
✔	7FGF	31579	2024-02-14	2021-07-26	2.8	2.93	—	3.0	0.006	0.77	0.0	0.05	14.36	0.01	2.295	8.04	0.00	6.9	93.1	0.0	-1.60	0.68	0.86	4.69	3.0	0.003	0.57	0.0	0.04	17.24	0.00	2.216	8.39	2.39	6.2	93.8	0.0	-1.13	0.33	0.70	0.87	4.00	10143	1296	3	0	0	0	0	logfile
✔	7FG2	31574	2024-02-14	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.003	0.74	0.0	0.05	14.60	0.00	2.135	17.08	0.00	13.0	86.8	0.3	-2.70	0.70	0.37	0.63	—	9342	1202	2	0	0	0	0	logfile
✔	7FG3	31577	2024-02-14	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.90	0.0	0.05	16.67	0.01	2.017	24.21	3.48	15.3	84.1	0.6	-3.68	0.72	0.23	0.46	0.35	9054	1166	2	0	0	0	0	logfile
✔	7RLC	24525	2024-02-22	2021-07-23	3.2	3.75	—	3.2	0.003	0.65	0.0	0.04	10.11	0.00	0.891	7.51	0.00	5.3	94.4	0.3	-1.71	0.83	0.79	1.78	3.2	0.003	0.58	0.0	0.04	11.64	0.00	1.897	6.18	0.80	4.8	95.2	0.0	-0.20	1.27	0.89	0.89	2.34	34980	4422	12	0	24	0	0	logfile
✘	7RL5	24516	2024-02-18	2021-07-23	3.8	3.61	—	3.8	0.013	2.04	24.0	0.11	16.71	0.02	0.524	3.05	2.05	3.3	96.3	0.4	-1.86	0.40	0.52	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106032	6708	24	0	24	0	52716	logfile
✔	7P91	13257	2024-02-18	2021-07-23	2.8	2.26	2.71	2.4	0.003	0.52	0.0	0.04	14.73	0.00	2.062	5.47	0.13	3.6	96.4	0.0	0.31	0.68	0.80	3.48	2.4	0.003	0.56	0.0	0.04	17.42	0.00	2.047	7.29	1.67	3.6	96.4	0.0	0.19	0.39	0.69	0.84	3.39	21419	2681	18	0	23	346	0	logfile
✔	7P92	13258	2024-02-14	2021-07-23	2.7	2.17	2.57	2.3	0.003	0.56	1.0	0.04	14.12	0.00	1.985	4.69	0.18	3.7	96.3	0.0	0.23	0.52	0.78	3.78	2.3	0.003	0.55	0.0	0.04	17.00	0.00	2.130	6.35	1.10	3.0	97.0	0.0	0.52	1.69	0.54	0.82	3.61	10436	1322	9	0	12	157	0	logfile
✔	7RLG	24529	2024-02-22	2021-07-23	3.7	3.79	—	3.5	0.003	0.73	0.0	0.05	13.67	0.00	2.261	10.57	0.16	4.6	95.4	0.0	-1.35	0.85	0.79	1.10	3.5	0.003	0.62	0.0	0.04	14.93	0.00	2.169	11.08	1.04	3.7	96.3	0.0	-0.26	1.45	0.89	0.85	1.35	34860	4410	12	0	12	0	0	logfile
✔	7FFL	31568	2024-02-19	2021-07-23	3.1	3.25	—	3.2	0.007	0.96	4.0	0.07	9.55	0.01	2.092	5.13	0.35	6.7	93.2	0.2	-3.39	0.46	0.81	3.29	3.2	0.004	0.67	0.0	0.05	13.99	0.00	2.097	8.98	2.41	5.5	94.4	0.2	-0.59	1.49	0.47	0.86	3.01	25767	3336	18	0	3	0	0	logfile
✔	7RLF	24528	2024-02-22	2021-07-23	3.1	3.36	—	3.0	0.004	0.58	0.0	0.04	15.18	0.00	2.042	12.48	0.19	3.9	95.9	0.3	0.50	0.85	0.83	2.17	3.0	0.005	0.58	0.0	0.04	15.47	0.00	1.958	9.71	1.48	3.5	96.4	0.1	0.86	0.40	0.89	0.89	2.38	34578	4368	12	0	24	0	0	logfile
✔	7RLJ	24532	2024-02-17	2021-07-23	3.8	4.28	—	3.7	0.004	0.92	0.0	0.05	15.19	0.01	2.067	15.59	0.01	6.2	93.2	0.6	-2.67	0.86	0.79	0.25	3.7	0.005	0.73	0.0	0.05	16.26	0.00	1.891	19.14	2.36	7.9	91.9	0.2	-1.33	1.27	0.89	0.85	0.92	69156	8736	24	0	36	0	0	logfile
✔	7FFF	31567	2024-02-22	2021-07-23	3.0	3.22	—	3.2	0.007	0.96	4.0	0.07	9.59	0.01	1.924	5.51	0.40	6.6	93.2	0.1	-3.27	0.49	0.80	3.17	3.2	0.003	0.66	0.0	0.04	14.52	0.00	2.092	8.27	2.52	5.2	94.7	0.1	-0.54	1.47	0.48	0.85	2.82	34356	4448	24	0	4	0	0	logfile
✔	7FFQ	31571	2024-02-19	2021-07-23	3.5	3.66	—	3.6	0.007	0.93	0.0	0.06	9.31	0.01	2.267	4.48	0.18	6.5	93.5	0.1	-3.45	0.48	0.76	2.43	3.6	0.004	0.69	0.0	0.04	14.03	0.00	2.129	10.69	2.80	6.2	93.7	0.1	-0.98	0.98	0.50	0.84	2.54	24808	3208	12	0	0	0	0	logfile
✔	7RLH	24530	2024-02-22	2021-07-23	3.0	3.28	—	2.9	0.004	0.61	0.0	0.04	13.64	0.00	1.783	13.77	0.00	4.1	95.7	0.3	0.36	0.87	0.84	2.26	2.8	0.006	0.66	0.0	0.05	15.43	0.00	1.880	13.09	1.48	4.7	95.1	0.3	0.64	0.49	0.90	0.89	2.38	34584	4368	12	0	24	0	0	logfile
✔	7RL9	24522	2024-02-22	2021-07-23	3.3	3.87	—	3.6	0.003	0.73	0.0	0.04	11.05	0.00	2.210	9.51	0.00	8.1	91.6	0.3	-1.82	0.82	0.81	1.73	3.6	0.003	0.61	0.0	0.04	12.15	0.00	2.194	8.11	1.37	7.6	92.4	0.0	-0.67	1.20	0.83	0.85	2.01	35220	4464	12	0	12	0	0	logfile

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