Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FFE	31566	2024-02-22	2021-07-23	3.5	3.89	—	3.9	0.007	0.93	0.0	0.06	9.40	0.01	2.211	4.93	0.28	6.6	93.3	0.1	-3.34	0.51	0.79	2.77	3.8	0.003	0.68	0.0	0.04	14.22	0.00	2.125	9.85	2.46	5.3	94.6	0.1	-0.56	2.44	0.50	0.83	2.26	33063	4275	16	0	0	0	0	logfile
✔	7FFF	31567	2024-02-22	2021-07-23	3.0	3.22	—	3.2	0.007	0.96	4.0	0.07	9.59	0.01	1.924	5.51	0.40	6.6	93.2	0.1	-3.27	0.49	0.80	3.17	3.2	0.003	0.66	0.0	0.04	14.52	0.00	2.092	8.27	2.52	5.2	94.7	0.1	-0.54	1.47	0.48	0.85	2.82	34356	4448	24	0	4	0	0	logfile
✔	7P92	13258	2024-02-14	2021-07-23	2.7	2.17	2.57	2.3	0.003	0.56	1.0	0.04	14.12	0.00	1.985	4.69	0.18	3.7	96.3	0.0	0.23	0.52	0.78	3.78	2.3	0.003	0.55	0.0	0.04	17.00	0.00	2.130	6.35	1.10	3.0	97.0	0.0	0.52	1.69	0.54	0.82	3.61	10436	1322	9	0	12	157	0	logfile
✔	7FFQ	31571	2024-02-19	2021-07-23	3.5	3.66	—	3.6	0.007	0.93	0.0	0.06	9.31	0.01	2.267	4.48	0.18	6.5	93.5	0.1	-3.45	0.48	0.76	2.43	3.6	0.004	0.69	0.0	0.04	14.03	0.00	2.129	10.69	2.80	6.2	93.7	0.1	-0.98	0.98	0.50	0.84	2.54	24808	3208	12	0	0	0	0	logfile
✔	7FFo	31570	2024-02-14	2021-07-23	3.5	3.58	—	3.6	0.007	0.94	0.0	0.06	9.50	0.01	1.293	5.69	0.33	6.6	93.3	0.1	-2.95	0.44	0.78	3.07	3.6	0.003	0.64	0.0	0.04	14.17	0.00	2.263	8.26	2.22	4.9	95.1	0.0	-0.51	1.58	0.48	0.84	2.85	8255	1067	4	0	0	0	0	logfile
✔	7P8N	13254	2024-02-18	2021-07-23	2.8	2.25	2.70	2.4	0.003	0.51	0.0	0.04	14.49	0.00	1.936	4.40	0.00	3.8	96.1	0.1	0.45	0.68	0.80	3.30	2.4	0.003	0.58	0.0	0.04	17.10	0.00	2.164	6.75	1.72	3.6	96.4	0.1	0.18	0.35	0.69	0.84	3.17	21429	2681	18	0	23	356	0	logfile
✔	7RL4	24514	2024-02-13	2021-07-23	2.86	2.50	—	3.1	0.015	1.16	0.0	0.07	16.04	0.01	2.535	12.04	0.00	12.5	87.5	0.0	-4.62	0.39	0.82	4.55	3.0	0.015	1.14	0.0	0.06	16.73	0.01	2.321	16.56	7.25	9.2	90.8	0.0	-4.77	0.68	0.39	0.85	5.54	4620	680	20	0	0	0	0	logfile
✔	7P8W	13256	2024-02-17	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.60	0.0	0.04	15.17	0.00	2.233	2.97	0.23	3.0	97.0	0.0	0.71	1.12	0.85	0.91	6.36	17668	2008	12	0	8	1110	0	logfile
✔	7P8V	13255	2024-02-13	2021-07-23	3.6	3.94	—	3.8	0.013	1.81	1.0	0.10	20.31	0.01	2.287	5.15	0.36	3.3	96.7	0.0	-0.42	0.83	0.85	2.78	3.9	0.003	0.55	0.0	0.04	20.51	0.01	1.876	9.27	3.47	3.0	97.0	0.0	-0.02	1.80	0.81	0.83	2.15	5988	662	6	35	4	0	0	logfile
✔	7P91	13257	2024-02-18	2021-07-23	2.8	2.26	2.71	2.4	0.003	0.52	0.0	0.04	14.73	0.00	2.062	5.47	0.13	3.6	96.4	0.0	0.31	0.68	0.80	3.48	2.4	0.003	0.56	0.0	0.04	17.42	0.00	2.047	7.29	1.67	3.6	96.4	0.0	0.19	0.39	0.69	0.84	3.39	21419	2681	18	0	23	346	0	logfile
✔	7RLC	24525	2024-02-22	2021-07-23	3.2	3.75	—	3.2	0.003	0.65	0.0	0.04	10.11	0.00	0.891	7.51	0.00	5.3	94.4	0.3	-1.71	0.83	0.79	1.78	3.2	0.003	0.58	0.0	0.04	11.64	0.00	1.897	6.18	0.80	4.8	95.2	0.0	-0.20	1.27	0.89	0.89	2.34	34980	4422	12	0	24	0	0	logfile
✘	7RL5	24516	2024-02-18	2021-07-23	3.8	3.61	—	3.8	0.013	2.04	24.0	0.11	16.71	0.02	0.524	3.05	2.05	3.3	96.3	0.4	-1.86	0.40	0.52	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106032	6708	24	0	24	0	52716	logfile
✔	7FFL	31568	2024-02-19	2021-07-23	3.1	3.25	—	3.2	0.007	0.96	4.0	0.07	9.55	0.01	2.092	5.13	0.35	6.7	93.2	0.2	-3.39	0.46	0.81	3.29	3.2	0.004	0.67	0.0	0.05	13.99	0.00	2.097	8.98	2.41	5.5	94.4	0.2	-0.59	1.49	0.47	0.86	3.01	25767	3336	18	0	3	0	0	logfile
✔	7RK6	24493	2024-02-20	2021-07-22	2.91	3.53	—	3.3	0.005	0.63	0.0	0.04	13.96	0.00	2.216	9.72	0.00	4.3	95.7	0.0	-0.28	0.78	0.80	2.05	3.3	0.003	0.67	0.0	0.04	15.19	0.00	2.174	10.42	1.32	4.3	95.7	0.0	0.05	0.42	0.77	0.80	1.98	28615	3564	12	0	27	4	0	logfile
✔	7RL0	24512	2024-02-18	2021-07-22	2.8	2.88	—	2.9	0.014	2.04	48.0	0.11	15.07	0.02	1.912	0.47	1.08	2.5	97.3	0.2	-1.35	0.40	0.48	2.19	2.9	0.007	0.77	0.0	0.05	17.23	0.01	1.760	12.16	2.22	3.8	96.0	0.2	0.03	1.16	0.52	0.72	2.10	106080	6708	24	0	48	0	52716	logfile
✔	7RKN	24501	2024-02-14	2021-07-22	3.6	3.80	—	3.7	0.004	0.97	0.0	0.06	12.67	0.01	2.206	7.90	0.00	4.7	95.3	0.0	-2.17	0.74	0.81	2.81	3.7	0.004	0.66	0.0	0.04	15.09	0.00	2.091	14.78	2.36	4.3	95.7	0.0	-1.50	0.42	0.74	0.84	2.37	9393	1201	6	0	0	0	0	logfile
✘	7RKZ	24511	2024-02-22	2021-07-22	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32610	4126	12	0	16	162	0	logfile
✔	7RKM	24500	2024-02-14	2021-07-22	3.5	3.62	—	3.5	0.005	0.97	0.0	0.06	12.32	0.00	2.181	7.47	0.00	3.7	96.3	0.0	-1.13	0.74	0.83	3.32	3.5	0.003	0.63	0.0	0.04	14.29	0.00	2.137	13.19	1.45	3.9	96.1	0.0	-0.33	0.38	0.74	0.83	2.63	9491	1201	6	0	1	0	0	logfile
✔	7RKH	24497	2024-02-24	2021-07-22	2.8	2.83	—	2.9	0.014	1.98	4.0	0.11	15.27	0.02	1.917	0.90	1.64	2.9	97.1	0.0	-0.45	0.58	0.73	3.48	2.8	0.003	0.55	0.0	0.05	17.00	0.00	1.826	5.25	2.20	2.8	97.2	0.0	0.71	1.32	0.60	0.79	3.49	35352	2236	8	0	16	0	17564	logfile
✔	7RKV	24504	2024-02-21	2021-07-22	3.45	4.38	—	3.9	0.009	1.34	18.0	0.08	11.81	0.01	1.829	14.29	0.54	3.6	96.4	0.0	0.06	0.76	0.54	2.12	3.9	0.004	0.62	0.0	0.04	12.71	0.00	2.197	8.36	1.15	3.2	96.8	0.0	0.99	1.17	0.83	0.80	2.36	31357	4278	12	0	39	0	0	logfile

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