Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SXU	40859	2024-02-13	2023-05-24	3.66	2.81	3.70	3.8	0.003	0.57	0.0	0.04	18.38	0.00	2.187	15.99	0.15	5.4	94.6	0.0	-0.09	0.64	0.66	0.42	1.8	0.003	0.69	0.0	0.04	18.39	0.00	2.028	20.15	4.37	4.8	95.2	0.0	-0.52	0.65	0.66	0.65	0.42	6207	726	2	10	0	0	0	logfile
✔	8JHF	36264	2024-02-16	2023-05-23	3.68	3.48	3.63	3.5	0.004	0.61	0.0	0.03	27.23	0.00	2.111	8.03	0.70	4.8	95.2	0.0	0.59	0.80	0.82	1.35	3.5	0.003	0.56	0.0	0.03	27.66	0.00	2.122	7.95	2.22	4.6	95.3	0.1	0.96	1.00	0.79	0.82	1.04	14703	1029	12	320	2	0	0	logfile
✔	8JHB	36261	2024-02-14	2023-05-23	3.3	2.35	3.35	2.1	0.003	0.75	0.0	0.05	14.03	0.00	2.146	6.34	0.11	4.7	95.3	0.0	-0.77	0.72	0.71	1.81	2.1	0.002	0.60	0.0	0.04	16.14	0.00	2.078	10.70	1.50	4.2	95.8	0.0	0.28	0.41	0.72	0.72	1.70	8648	1093	5	0	0	0	0	logfile
✔	8JHG	36265	2024-02-16	2023-05-23	3.58	3.41	3.62	3.4	0.004	0.59	0.0	0.03	26.86	0.00	2.152	8.47	0.92	5.4	94.6	0.0	0.29	0.81	0.83	1.74	3.4	0.003	0.57	0.0	0.03	26.84	0.00	2.175	8.77	1.50	4.0	96.0	0.0	0.67	0.99	0.81	0.83	1.23	14829	1040	12	320	2	0	0	logfile
✔	8P53	17445	2024-02-16	2023-05-23	2.7	2.29	2.79	2.0	0.004	0.65	0.0	0.04	13.22	0.00	1.943	8.14	0.11	3.2	96.8	0.0	-0.24	0.79	0.81	3.54	2.0	0.003	0.59	0.0	0.04	16.56	0.00	1.974	8.57	2.28	3.2	96.8	0.0	0.17	1.03	0.80	0.82	3.25	16299	2071	8	0	4	0	0	logfile
✔	8P51	17436	2024-02-15	2023-05-23	3.55	4.39	3.63	4.0	0.006	0.83	0.0	0.05	13.50	0.01	2.113	4.21	0.00	4.4	95.6	0.0	-1.93	0.82	0.71	2.07	4.0	0.006	0.80	0.0	0.04	15.01	0.00	2.120	10.75	1.05	4.0	95.9	0.1	0.81	1.70	0.89	0.85	1.75	12389	1574	1	0	0	0	0	logfile
✔	8P52	17440	2024-02-18	2023-05-23	3.6	3.64	—	3.4	0.002	0.63	0.0	0.04	13.73	0.01	2.166	3.44	0.00	5.6	94.4	0.0	-2.19	0.78	0.55	1.88	3.4	0.003	0.65	0.0	0.04	15.43	0.00	2.103	8.92	1.62	4.2	95.8	0.0	0.20	1.53	0.85	0.74	1.39	22783	2914	1	0	0	0	0	logfile
✔	8P50	17435	2024-02-15	2023-05-23	4.04	5.40	4.05	3.9	0.004	0.88	0.0	0.05	14.21	0.01	1.901	6.41	0.00	4.7	95.3	0.0	-1.98	0.62	0.03	—	3.9	0.003	0.70	0.0	0.04	13.96	0.00	1.843	8.55	0.07	3.6	96.4	0.1	-0.04	1.31	0.62	0.03	—	13714	1735	3	0	2	0	0	logfile
✔	8P4X	17429	2024-02-14	2023-05-23	2.57	2.74	2.57	2.8	0.004	0.56	0.0	0.04	13.12	0.00	2.112	1.65	0.00	3.6	96.4	0.0	-0.11	0.74	0.85	5.24	2.8	0.003	0.58	0.0	0.04	14.99	0.00	2.279	2.00	1.62	1.4	98.6	0.0	0.04	0.35	0.71	0.85	4.36	8756	1052	6	0	4	84	0	logfile
✔	8JHi	36266	2024-02-14	2023-05-23	3.2	3.84	3.46	3.8	0.004	0.71	0.0	0.05	14.30	0.01	2.158	7.15	0.00	5.4	94.6	0.0	-0.87	0.65	0.79	1.91	3.8	0.003	0.66	0.0	0.04	15.86	0.00	2.139	12.84	2.59	5.2	94.8	0.0	0.07	0.45	0.62	0.80	1.60	8562	1077	5	0	0	0	0	logfile
✘	8JHC	36262	2024-02-13	2023-05-23	3.3	2.39	3.35	2.1	0.004	0.70	0.0	0.05	14.17	0.01	2.227	5.42	0.00	5.7	94.3	0.0	-1.38	0.75	0.76	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7563	986	4	0	0	0	0	logfile
✔	8JH4	36253	2024-02-24	2023-05-22	3.2	3.52	3.35	3.2	0.005	0.76	1.0	0.05	19.43	0.01	1.977	9.27	0.17	3.0	96.9	0.1	-0.84	0.74	0.65	1.97	3.2	0.003	0.58	0.0	0.04	20.53	0.00	2.008	9.52	0.88	3.4	96.6	0.0	0.95	0.80	0.86	0.82	2.20	44415	4671	29	354	9	0	0	logfile
✔	8JH3	36252	2024-02-24	2023-05-22	3.7	3.96	3.80	3.6	0.005	0.71	0.0	0.04	19.21	0.00	1.149	8.81	0.35	3.2	96.7	0.1	-0.79	0.73	0.60	1.47	3.7	0.007	0.80	0.0	0.04	20.43	0.01	1.912	16.35	1.41	5.4	94.6	0.0	0.02	0.91	0.84	0.76	1.61	43416	4655	29	313	9	0	0	logfile
✔	8P4i	17409	2024-02-24	2023-05-22	3.83	4.09	—	4.0	0.012	1.73	13.0	0.09	14.63	0.01	2.265	0.43	1.50	4.8	94.9	0.2	-2.25	0.75	0.86	3.52	4.0	0.004	0.74	2.0	0.05	15.93	0.00	2.042	5.60	2.48	6.3	93.7	0.0	-1.36	0.56	0.76	0.87	2.85	42976	5389	17	0	0	0	0	logfile
✔	8JH7	36258	2024-02-13	2023-05-22	3.2	2.35	3.28	2.1	0.003	0.77	0.0	0.05	13.57	0.01	2.240	6.25	0.00	5.0	95.0	0.0	-1.48	0.74	0.73	2.56	2.1	0.004	0.70	0.0	0.04	16.26	0.00	2.188	12.63	2.65	5.4	94.6	0.0	0.08	1.06	0.75	0.76	2.55	7663	988	4	0	0	0	0	logfile
✔	8P4K	17410	2024-02-20	2023-05-22	3.8	3.61	4.17	3.8	0.020	2.62	0.0	0.10	9.97	0.01	2.351	1.00	0.00	1.0	99.0	0.0	0.04	0.30	0.42	1.07	3.6	0.003	1.08	0.0	0.04	13.47	0.00	1.954	16.26	1.08	4.5	95.5	0.0	-0.05	0.82	0.37	0.52	0.93	29211	1797	3	0	0	0	14643	logfile
✘	8SXA	40829	2024-02-17	2023-05-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18596	1153	1	0	0	0	9418	logfile
✔	8P4A	17403	2024-02-23	2023-05-20	3.6	4.57	3.57	3.7	0.005	0.84	16.0	0.09	15.47	0.01	1.959	14.95	3.72	4.6	95.2	0.2	-0.87	0.90	0.84	1.75	3.7	0.005	0.69	0.0	0.04	15.62	0.00	1.990	16.72	2.03	5.4	94.6	0.0	0.11	0.57	0.91	0.86	1.62	36673	4372	22	86	9	0	0	logfile
✔	8JGF	36232	2024-02-14	2023-05-20	2.7	2.39	2.58	3.0	0.008	0.86	1.0	0.05	15.55	0.00	2.221	9.14	0.58	4.3	95.7	0.0	0.21	0.81	0.78	3.15	3.0	0.003	0.65	0.0	0.04	16.98	0.00	2.172	10.31	3.48	2.9	97.1	0.0	1.35	1.63	0.80	0.82	3.14	8338	1101	6	0	0	0	0	logfile
✔	8SX7	40826	2024-02-17	2023-05-20	2.7	3.18	2.98	3.2	0.026	1.09	0.0	0.14	12.64	0.01	2.180	2.39	0.39	2.5	97.5	0.0	-1.48	0.54	0.65	1.29	3.2	0.004	0.73	0.0	0.04	15.07	0.01	2.051	10.61	1.84	2.2	97.8	0.0	-0.78	0.77	0.53	0.68	1.19	19237	1188	2	0	1	3	9719	logfile

• ← previous
• Page 38 of 633
• next →