Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JGB	36229	2024-02-13	2023-05-20	2.84	2.28	2.92	2.0	0.010	1.22	2.0	0.07	15.63	0.01	2.230	7.27	2.89	6.4	93.6	0.0	-2.42	0.83	0.82	3.66	2.0	0.003	0.67	0.0	0.04	16.60	0.00	2.253	5.49	3.02	4.1	95.9	0.0	-0.15	0.53	0.83	0.83	3.70	7796	1062	6	0	0	0	0	logfile
✔	8JGG	36233	2024-02-13	2023-05-20	3.0	3.29	3.17	3.2	0.006	0.94	0.0	0.05	14.77	0.00	2.288	9.81	1.05	5.8	94.2	0.0	-1.51	0.60	0.81	3.17	3.2	0.003	0.59	0.0	0.04	15.66	0.00	2.214	5.10	3.68	3.1	96.9	0.0	-0.19	0.37	0.62	0.83	2.98	7889	1076	6	0	0	0	0	logfile
✔	8P4C	17405	2024-02-24	2023-05-20	3.8	4.28	2.98	3.0	0.005	0.84	2.0	0.05	15.21	0.01	0.317	21.26	0.43	5.1	94.8	0.1	-1.21	0.80	0.66	1.13	3.1	0.003	0.69	0.0	0.04	16.36	0.00	2.050	14.85	1.58	5.3	94.7	0.0	-0.16	2.36	0.88	0.85	1.79	41439	4953	20	90	4	0	0	logfile
✔	8P4A	17403	2024-02-23	2023-05-20	3.6	4.57	3.57	3.7	0.005	0.84	16.0	0.09	15.47	0.01	1.959	14.95	3.72	4.6	95.2	0.2	-0.87	0.90	0.84	1.75	3.7	0.005	0.69	0.0	0.04	15.62	0.00	1.990	16.72	2.03	5.4	94.6	0.0	0.11	0.57	0.91	0.86	1.62	36673	4372	22	86	9	0	0	logfile
✔	8JGF	36232	2024-02-14	2023-05-20	2.7	2.39	2.58	3.0	0.008	0.86	1.0	0.05	15.55	0.00	2.221	9.14	0.58	4.3	95.7	0.0	0.21	0.81	0.78	3.15	3.0	0.003	0.65	0.0	0.04	16.98	0.00	2.172	10.31	3.48	2.9	97.1	0.0	1.35	1.63	0.80	0.82	3.14	8338	1101	6	0	0	0	0	logfile
✔	8SX8	40827	2024-02-17	2023-05-20	3.5	3.82	3.45	3.7	0.005	0.84	0.0	0.06	12.22	0.01	2.132	0.95	0.10	2.0	98.0	0.0	-1.93	0.62	0.79	2.30	3.7	0.003	0.52	0.0	0.04	14.25	0.00	1.954	5.78	0.98	1.8	98.2	0.0	1.19	1.15	0.63	0.79	1.60	19025	1175	2	0	1	1	9610	logfile
✔	8P4B	17404	2024-02-22	2023-05-20	3.2	3.70	3.17	3.5	0.003	0.70	0.0	0.05	15.03	0.00	1.698	14.92	0.03	5.2	94.8	0.0	-0.88	0.85	0.84	2.62	3.5	0.003	0.66	0.0	0.04	16.89	0.00	2.041	14.91	1.37	5.2	94.8	0.0	-0.18	1.17	0.84	0.85	2.23	35383	4219	22	81	9	0	0	logfile
✔	8SX7	40826	2024-02-17	2023-05-20	2.7	3.18	2.98	3.2	0.026	1.09	0.0	0.14	12.64	0.01	2.180	2.39	0.39	2.5	97.5	0.0	-1.48	0.54	0.65	1.29	3.2	0.004	0.73	0.0	0.04	15.07	0.01	2.051	10.61	1.84	2.2	97.8	0.0	-0.78	0.77	0.53	0.68	1.19	19237	1188	2	0	1	3	9719	logfile
✔	8SXB	40830	2024-02-17	2023-05-20	2.9	3.19	2.99	3.2	0.006	0.83	0.0	0.06	12.61	0.01	2.288	0.97	0.00	2.0	98.0	0.0	-0.86	0.61	0.81	2.92	3.1	0.003	0.52	0.0	0.04	14.69	0.00	1.862	4.40	1.00	2.2	97.8	0.0	0.68	1.15	0.59	0.81	2.21	18604	1152	2	0	1	1	9405	logfile
✘	8SX9	40828	2024-02-17	2023-05-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18596	1153	1	0	0	0	9418	logfile
✔	8JFZ	36220	2024-02-18	2023-05-19	3.5	3.45	3.49	3.6	0.011	1.55	0.0	0.07	18.97	0.01	2.092	18.66	7.50	5.9	94.0	0.2	-1.79	0.71	0.78	1.41	3.5	0.003	0.63	0.0	0.04	16.25	0.00	2.009	8.17	2.18	2.9	97.1	0.0	0.91	1.34	0.73	0.82	1.63	22340	2642	22	0	70	6	0	logfile
✔	8SWN	40821	2024-02-17	2023-05-19	3.1	3.32	3.08	3.3	0.020	1.67	85.0	0.20	13.42	0.01	1.789	0.38	0.00	1.2	98.8	0.0	-0.67	0.67	0.86	4.37	3.3	0.004	0.53	0.0	0.04	15.21	0.00	1.775	3.02	1.32	1.7	98.3	0.0	1.57	2.21	0.66	0.86	2.66	18422	1135	2	0	5	0	9269	logfile
✔	8P49	17402	2024-02-17	2023-05-19	2.79	3.50	2.98	3.4	0.002	0.44	0.0	0.04	11.69	0.00	2.233	3.77	0.95	1.8	98.2	0.0	1.58	0.78	0.85	2.78	3.4	0.002	0.56	0.0	0.04	13.94	0.00	2.198	5.76	1.10	1.8	98.2	0.0	1.58	0.93	0.76	0.82	2.59	17914	2192	6	0	0	0	0	logfile
✔	8P3Y	17399	2024-02-17	2023-05-18	3.55	3.90	3.43	3.6	0.013	1.69	1.0	0.12	14.45	0.01	2.163	11.07	2.22	4.4	95.0	0.5	-1.70	0.61	0.66	1.59	3.6	0.004	0.70	0.0	0.04	15.04	0.00	2.155	13.02	2.52	2.9	97.0	0.1	1.65	0.87	0.67	0.82	1.62	17012	2291	8	0	0	0	0	logfile
✔	8P3Z	17400	2024-02-17	2023-05-18	3.46	3.90	3.32	3.6	0.013	1.65	2.0	0.11	14.12	0.02	2.217	8.69	1.02	4.4	95.3	0.4	-1.65	0.56	0.57	0.42	3.6	0.006	0.75	0.0	0.04	15.40	0.00	2.056	13.87	2.71	3.2	96.8	0.0	1.67	1.83	0.66	0.82	1.59	16974	2284	8	0	0	0	0	logfile
✔	8P3W	17397	2024-02-17	2023-05-18	3.53	3.95	3.35	3.6	0.012	1.63	19.0	0.13	15.87	0.02	1.988	8.93	3.17	3.0	96.9	0.1	-0.44	0.65	0.75	2.71	3.6	0.005	0.68	0.0	0.04	15.86	0.00	2.106	13.88	2.76	2.0	98.0	0.0	1.28	0.86	0.67	0.81	2.17	17485	2251	24	0	14	33	0	logfile
✔	8P3X	17398	2024-02-17	2023-05-18	3.36	3.85	3.33	3.6	0.013	1.66	2.0	0.11	14.28	0.01	2.232	7.73	1.68	4.4	95.4	0.2	-1.65	0.62	0.66	1.61	3.6	0.004	0.85	1.0	0.04	14.97	0.00	2.092	12.11	2.93	2.7	97.3	0.0	2.08	1.66	0.67	0.83	1.72	17035	2293	8	0	0	0	0	logfile
✔	8P3P	17389	2024-02-18	2023-05-18	2.5	3.25	2.58	3.0	0.003	0.63	0.0	0.03	16.19	0.00	2.267	5.98	0.86	4.1	95.9	0.0	3.26	0.76	0.89	2.76	3.0	0.003	0.64	0.0	0.03	16.50	0.00	2.331	5.68	1.40	3.6	96.4	0.0	3.90	0.21	0.73	0.86	2.54	21224	2656	8	0	0	0	0	logfile
✔	8P3T	17394	2024-02-16	2023-05-18	3.39	3.89	3.20	3.5	0.012	1.40	7.0	0.10	15.56	0.01	2.226	11.91	4.78	2.5	97.1	0.4	-0.20	0.62	0.72	2.31	3.5	0.006	0.67	0.0	0.04	15.70	0.00	2.103	12.27	3.17	1.8	98.2	0.0	2.14	0.74	0.67	0.84	2.18	16861	2237	8	0	0	0	0	logfile
✔	8P3U	17395	2024-02-17	2023-05-18	3.77	4.35	3.68	3.9	0.012	1.43	10.0	0.10	15.17	0.01	2.166	13.39	3.81	2.5	96.9	0.6	0.03	0.60	0.66	1.33	3.9	0.003	0.69	0.0	0.04	15.52	0.00	2.136	14.65	2.38	1.5	98.3	0.2	1.66	0.77	0.63	0.74	0.78	16888	2241	8	0	0	0	0	logfile

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