Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P3U	17395	2024-02-17	2023-05-18	3.77	4.35	3.68	3.9	0.012	1.43	10.0	0.10	15.17	0.01	2.166	13.39	3.81	2.5	96.9	0.6	0.03	0.60	0.66	1.33	3.9	0.003	0.69	0.0	0.04	15.52	0.00	2.136	14.65	2.38	1.5	98.3	0.2	1.66	0.77	0.63	0.74	0.78	16888	2241	8	0	0	0	0	logfile
✔	8P3Q	17392	2024-02-17	2023-05-18	2.95	3.72	3.13	3.5	0.010	1.37	2.0	0.08	18.61	0.01	2.310	13.78	9.79	5.9	93.2	1.0	-1.51	0.69	0.84	2.07	3.5	0.003	0.72	0.0	0.04	16.82	0.00	2.104	12.62	2.42	3.6	96.2	0.2	1.56	1.69	0.63	0.79	2.00	18047	2299	19	0	16	7	0	logfile
✔	8P3Y	17399	2024-02-17	2023-05-18	3.55	3.90	3.43	3.6	0.013	1.69	1.0	0.12	14.45	0.01	2.163	11.07	2.22	4.4	95.0	0.5	-1.70	0.61	0.66	1.59	3.6	0.004	0.70	0.0	0.04	15.04	0.00	2.155	13.02	2.52	2.9	97.0	0.1	1.65	0.87	0.67	0.82	1.62	17012	2291	8	0	0	0	0	logfile
✔	8P3T	17394	2024-02-16	2023-05-18	3.39	3.89	3.20	3.5	0.012	1.40	7.0	0.10	15.56	0.01	2.226	11.91	4.78	2.5	97.1	0.4	-0.20	0.62	0.72	2.31	3.5	0.006	0.67	0.0	0.04	15.70	0.00	2.103	12.27	3.17	1.8	98.2	0.0	2.14	0.74	0.67	0.84	2.18	16861	2237	8	0	0	0	0	logfile
✔	8SW7	40810	2024-02-16	2023-05-17	3.37	3.85	3.96	3.9	0.022	1.72	0.0	0.13	11.37	0.01	2.188	1.14	0.14	2.2	97.8	0.1	0.77	0.58	0.77	2.95	3.8	0.003	0.66	0.0	0.04	14.61	0.00	2.196	9.29	2.91	3.1	96.9	0.0	-0.43	1.31	0.51	0.78	2.01	15133	1664	17	0	289	0	0	logfile
✔	8P34	17383	2024-02-13	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.003	0.53	0.0	0.05	13.66	0.00	2.674	0.69	1.23	4.3	95.7	0.0	-1.62	0.28	0.28	0.88	6.38	711	94	1	0	0	0	0	logfile
✘	8P2S	17373	2024-02-14	2023-05-16	2.4	2.06	2.43	1.8	0.003	0.54	0.0	0.04	12.82	0.00	2.120	8.76	3.01	4.7	95.2	0.1	0.29	0.79	0.75	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9694	1201	4	0	6	0	0	logfile
✔	8JET	36195	2024-02-17	2023-05-16	3.1	2.32	3.02	3.2	0.002	0.43	0.0	0.04	9.65	0.00	2.269	3.61	1.54	5.4	94.6	0.0	-0.08	0.69	0.80	1.95	3.2	0.003	0.58	0.0	0.04	12.68	0.00	2.152	8.03	1.54	6.0	93.9	0.1	1.50	1.54	0.70	0.81	1.52	19526	2612	4	0	0	0	0	logfile
✔	8P2L	17369	2024-02-24	2023-05-16	2.68	3.61	2.85	3.3	0.010	1.60	47.0	0.11	13.68	0.01	2.486	1.07	0.56	2.8	97.2	0.0	-1.64	0.78	0.67	2.92	3.3	0.004	0.79	0.0	0.04	15.28	0.00	2.063	13.13	1.09	3.9	96.1	0.0	0.82	0.79	0.82	0.86	1.89	40776	5152	24	0	8	0	0	logfile
✔	8SVF	40789	2024-02-16	2023-05-16	3.2	4.13	3.32	3.5	0.003	0.53	0.0	0.03	24.96	0.00	2.220	6.36	1.28	1.6	98.4	0.0	2.82	0.85	0.83	1.74	3.5	0.003	0.58	0.0	0.03	26.09	0.00	2.197	8.62	1.93	2.5	97.5	0.0	2.69	0.63	0.86	0.85	1.21	15254	1189	13	295	0	0	0	logfile
✔	8P2M	17370	2024-02-24	2023-05-16	3.82	5.95	4.51	4.2	0.012	1.85	111.0	0.14	13.83	0.01	2.190	2.42	1.90	4.5	95.5	0.0	-1.71	0.87	0.76	-0.22	4.2	0.003	0.78	0.0	0.04	15.24	0.00	2.096	18.16	1.41	3.2	96.8	0.0	1.38	0.83	0.88	0.76	0.07	46702	5819	9	0	0	0	0	logfile
✔	8JEJ	36190	2024-02-14	2023-05-16	2.5	2.72	2.51	2.8	0.030	1.34	0.0	0.49	18.65	0.01	2.165	7.23	2.60	4.3	95.7	0.0	0.11	0.69	0.88	5.00	2.8	0.003	1.08	0.0	0.06	17.79	0.01	1.809	6.52	1.92	3.9	96.1	0.0	0.65	0.18	0.69	0.88	4.83	8604	1089	5	0	6	0	0	logfile
✔	8JEK	36191	2024-02-14	2023-05-16	2.7	2.98	2.75	3.0	0.031	1.34	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.004	1.07	0.0	0.06	16.84	0.01	1.805	7.38	3.16	5.0	95.0	0.0	0.31	0.19	0.65	0.86	4.44	8623	1089	5	0	6	0	0	logfile
✔	8JEU	36196	2024-02-17	2023-05-16	3.5	4.02	3.58	3.9	0.002	0.52	0.0	0.04	15.90	0.00	2.202	6.95	0.17	5.0	94.7	0.3	-0.27	0.71	0.81	2.03	3.9	0.002	0.57	0.0	0.04	15.98	0.00	2.152	8.17	1.88	4.8	94.9	0.2	1.14	0.41	0.71	0.80	1.42	19438	2640	4	0	0	0	0	logfile
✔	8P2D	17361	2024-02-14	2023-05-15	2.59	2.21	2.59	2.0	0.002	0.51	0.0	0.04	12.79	0.00	1.968	10.26	4.79	8.1	91.9	0.0	-1.58	0.71	0.64	2.46	2.0	0.003	0.67	0.0	0.04	16.03	0.00	2.060	13.60	2.45	6.9	93.1	0.0	-1.11	1.31	0.73	0.67	1.67	8793	1087	4	0	4	0	0	logfile
✔	8SV8	40782	2024-02-14	2023-05-15	3.38	3.59	—	3.5	0.004	0.72	0.0	0.04	16.38	0.01	2.199	10.96	0.54	5.5	94.4	0.1	-0.43	0.82	0.85	1.72	3.5	0.002	0.57	0.0	0.04	16.91	0.00	2.149	10.03	2.36	4.7	95.2	0.1	0.36	0.94	0.84	0.88	1.46	10208	1299	5	0	1	0	0	logfile
✔	8P27	17358	2024-02-14	2023-05-15	2.73	2.25	2.73	2.1	0.004	0.55	0.0	0.04	12.49	0.00	1.936	6.22	5.43	8.3	91.7	0.0	-2.06	0.79	0.77	3.73	2.1	0.004	0.63	0.0	0.05	16.46	0.00	1.872	8.40	5.74	8.0	92.0	0.0	-1.64	0.47	0.81	0.79	3.03	8810	1089	4	0	4	0	0	logfile
✔	8P2C	17360	2024-02-18	2023-05-15	2.59	2.23	2.67	2.0	0.003	0.49	0.0	0.04	13.17	0.00	1.935	5.71	2.68	6.8	93.0	0.1	-0.71	0.81	0.80	3.52	2.0	0.003	0.59	0.0	0.04	16.48	0.00	1.989	7.50	1.79	6.1	93.8	0.0	-0.30	0.57	0.82	0.81	2.95	21173	2588	8	0	16	0	0	logfile
✔	8P28	17359	2024-02-18	2023-05-15	2.77	2.35	2.80	2.1	0.005	0.64	0.0	0.05	13.73	0.00	1.795	6.79	2.15	10.0	89.8	0.2	-1.36	0.78	0.77	3.56	2.1	0.004	0.68	0.0	0.04	15.95	0.00	1.895	8.32	3.45	7.2	92.8	0.0	-0.73	0.42	0.80	0.80	2.74	21141	2584	8	0	16	0	0	logfile
✔	8JEC	36185	2024-02-17	2023-05-15	3.1	3.61	3.15	3.5	0.002	0.40	0.0	0.04	9.75	0.00	2.196	4.85	1.03	4.1	95.8	0.1	0.28	0.70	0.82	2.48	3.5	0.003	0.58	0.0	0.04	12.63	0.00	2.214	7.46	1.42	4.6	95.3	0.1	1.78	0.47	0.72	0.84	1.67	19680	2632	4	0	0	0	0	logfile

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