Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GA5	29890	2024-02-13	2023-02-22	2.6	2.87	2.69	2.9	0.005	0.80	0.0	0.05	13.67	0.01	2.279	3.55	0.00	1.9	98.1	0.0	-5.58	0.68	0.87	4.21	2.9	0.004	0.63	0.0	0.04	15.23	0.00	2.140	9.70	1.77	1.2	98.8	0.0	2.25	0.93	0.59	0.85	3.81	6789	900	6	0	6	29	0	logfile
✔	8GA3	29885	2024-02-13	2023-02-22	3.1	3.32	3.21	3.3	0.005	0.89	0.0	0.05	14.76	0.01	2.294	4.25	0.00	7.0	93.0	0.0	-6.60	0.65	0.81	2.52	3.3	0.003	0.68	0.0	0.04	15.75	0.00	2.193	7.97	1.06	6.8	93.2	0.0	-0.68	0.41	0.59	0.81	1.97	6590	886	4	0	4	0	0	logfile
✔	8G9Y	29882	2024-02-17	2023-02-22	4.28	5.75	4.38	4.3	0.008	1.34	4.0	0.07	19.16	0.01	2.193	9.13	0.00	9.6	90.3	0.1	-4.83	0.87	0.84	—	4.3	0.003	0.72	0.0	0.04	12.45	0.00	2.149	14.44	0.00	7.0	93.0	0.0	-1.55	1.19	0.87	0.85	—	17135	1983	53	0	120	0	0	logfile
✘	8GA8	29892	2024-02-18	2023-02-22	3.5	3.70	3.49	3.7	0.003	0.54	0.0	0.04	17.43	0.00	2.028	11.33	0.33	2.6	97.4	0.0	0.98	0.70	0.69	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22011	2675	12	0	2	0	0	logfile
✔	8iHB	35442	2024-02-14	2023-02-22	2.85	3.06	2.88	3.1	0.004	0.54	0.0	0.04	17.04	0.00	2.202	6.32	0.44	3.5	96.5	0.0	-0.70	0.64	0.86	3.13	3.1	0.004	0.59	0.0	0.04	17.41	0.00	2.219	6.62	3.74	3.4	96.6	0.0	0.47	0.28	0.65	0.86	2.87	8708	1131	6	0	2	0	0	logfile
✔	8iHH	35444	2024-02-14	2023-02-22	3.06	3.40	3.17	3.4	0.003	0.55	0.0	0.04	16.30	0.00	2.165	6.84	0.22	3.7	96.3	0.0	-0.71	0.67	0.82	3.46	3.4	0.003	0.54	0.0	0.04	17.04	0.00	2.159	6.90	3.33	4.0	96.0	0.0	0.15	1.07	0.65	0.81	3.11	8670	1131	6	0	2	0	0	logfile
✔	8iHF	35443	2024-02-14	2023-02-22	2.97	3.26	3.05	3.3	0.003	0.53	0.0	0.04	17.37	0.00	2.218	6.05	0.11	3.8	96.2	0.0	-0.41	0.69	0.85	2.78	3.3	0.003	0.58	0.0	0.04	17.50	0.00	2.196	7.40	3.32	3.4	96.6	0.0	0.24	0.90	0.65	0.85	2.72	8691	1131	6	0	2	0	0	logfile
✔	8iHJ	35446	2024-02-14	2023-02-22	3.07	3.50	3.25	3.5	0.003	0.49	0.0	0.04	16.51	0.00	2.152	5.68	0.11	3.3	96.7	0.0	-0.90	0.67	0.86	2.64	3.5	0.005	0.58	0.0	0.04	17.12	0.00	1.962	7.55	4.82	4.8	95.2	0.0	-0.16	0.33	0.62	0.84	2.69	8509	1122	6	0	1	0	0	logfile
✔	8G9B	29863	2024-02-21	2023-02-21	3.0	3.05	3.17	3.1	0.007	1.09	1.0	0.05	20.27	0.01	1.886	10.81	0.60	4.0	95.9	0.2	-0.04	0.66	0.86	3.26	3.1	0.003	0.65	0.0	0.04	18.56	0.00	2.128	8.22	2.57	4.0	95.9	0.1	-0.15	0.41	0.63	0.86	3.30	31040	3912	16	0	40	0	0	logfile
✔	8iGS	35439	2024-02-19	2023-02-21	3.4	3.65	3.25	3.4	0.003	0.59	0.0	0.04	19.32	0.00	1.981	5.07	1.04	5.5	94.5	0.0	0.31	0.80	0.87	1.89	3.4	0.004	0.72	1.0	0.04	19.53	0.00	2.068	8.44	2.65	5.1	94.9	0.0	0.64	0.42	0.81	0.88	1.96	24481	2925	8	73	3	0	0	logfile
✔	8iGR	35438	2024-02-21	2023-02-21	3.1	3.45	3.00	3.1	0.005	0.62	1.0	0.04	20.46	0.00	1.787	5.74	0.60	6.6	93.4	0.0	-0.49	0.83	0.84	2.55	3.2	0.003	0.63	0.0	0.04	20.30	0.00	2.015	8.57	3.12	4.8	95.2	0.0	0.51	1.35	0.84	0.87	2.24	30043	3510	13	122	3	0	0	logfile
✔	8G92	29860	2024-02-13	2023-02-21	3.6	3.86	3.44	3.8	0.005	0.66	0.0	0.04	13.69	0.00	2.219	8.32	0.00	2.4	97.6	0.0	-1.13	0.56	0.81	3.18	3.8	0.003	0.62	0.0	0.04	15.25	0.00	2.229	6.93	4.46	1.0	99.0	0.0	2.17	0.96	0.56	0.81	2.37	3211	415	1	0	1	0	0	logfile
✔	8G94	29861	2024-02-14	2023-02-21	3.15	3.43	3.12	3.3	0.006	0.72	0.0	0.05	13.02	0.00	2.206	6.51	0.00	4.1	95.9	0.0	-2.32	0.70	0.87	3.37	3.3	0.003	0.59	0.0	0.04	15.13	0.00	2.095	9.01	2.10	4.3	95.7	0.0	0.64	0.96	0.71	0.89	2.89	9222	1187	7	0	0	0	0	logfile
✔	8G9F	29864	2024-02-23	2023-02-21	3.2	3.77	3.13	3.2	0.003	0.50	0.0	0.04	16.16	0.00	2.257	2.77	0.00	3.1	96.9	0.0	0.34	0.89	0.83	3.53	3.2	0.003	0.49	0.0	0.04	16.03	0.00	2.030	4.00	0.62	2.6	97.3	0.0	1.60	2.17	0.90	0.88	3.27	37540	2321	7	0	4	0	18758	logfile
✔	8G99	29862	2024-02-21	2023-02-21	2.8	3.52	2.71	3.0	0.003	0.47	0.0	0.04	16.85	0.00	2.205	2.32	0.00	3.1	96.9	0.0	0.58	0.86	0.86	4.21	3.0	0.005	0.52	0.0	0.04	16.98	0.00	2.021	4.21	0.47	2.9	97.1	0.0	1.72	2.00	0.86	0.90	3.83	30205	1875	5	0	3	0	15109	logfile
✔	8G8W	29857	2024-02-13	2023-02-20	3.8	4.07	3.71	4.0	0.004	0.69	0.0	0.05	17.42	0.00	2.234	5.38	0.18	1.8	98.2	0.0	1.75	0.72	0.82	1.89	4.0	0.003	0.56	0.0	0.04	16.23	0.00	2.197	5.95	2.03	3.3	96.7	0.0	1.40	0.90	0.72	0.81	2.03	6471	902	5	0	6	0	0	logfile
✔	8G8Y	29858	2024-02-15	2023-02-20	3.8	3.46	4.04	3.4	0.003	0.57	0.0	0.04	16.78	0.00	2.142	5.66	0.72	1.2	98.8	0.0	2.57	0.52	0.86	2.49	3.4	0.003	0.56	0.0	0.04	16.80	0.00	2.114	6.17	3.41	1.1	98.9	0.0	3.30	0.40	0.53	0.86	2.50	13717	1715	12	0	0	0	0	logfile
✔	8CML	16730	2024-02-15	2023-02-20	3.6	3.88	3.60	3.9	0.003	0.66	0.0	0.05	16.47	0.00	2.115	9.39	0.60	5.3	94.5	0.2	-0.48	0.72	0.73	1.78	3.9	0.003	0.65	0.0	0.04	16.92	0.00	2.100	9.94	5.62	6.1	93.6	0.2	-0.58	0.48	0.73	0.75	1.97	13594	1728	5	0	2	0	0	logfile
✔	8iFY	35426	2024-02-24	2023-02-20	2.55	3.50	2.66	2.7	0.005	0.77	1.0	0.05	16.51	0.01	1.700	8.57	1.54	3.7	96.1	0.2	-0.55	0.73	0.52	2.53	2.7	0.004	0.61	0.0	0.04	15.89	0.00	2.158	6.97	2.02	3.8	96.2	0.0	-0.16	0.40	0.82	0.82	2.13	34248	4218	24	0	55	0	0	logfile
✔	8iFZ	35427	2024-02-15	2023-02-20	2.85	3.79	3.41	3.2	0.004	0.60	0.0	0.04	17.66	0.01	2.185	5.99	2.31	3.8	96.1	0.1	-1.72	0.73	0.76	1.98	3.3	0.003	0.67	0.0	0.04	17.40	0.00	2.048	8.90	3.32	3.2	96.8	0.0	-0.47	2.92	0.75	0.86	2.07	6506	789	3	0	6	0	0	logfile

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