Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iFZ	35427	2024-02-15	2023-02-20	2.85	3.79	3.41	3.2	0.004	0.60	0.0	0.04	17.66	0.01	2.185	5.99	2.31	3.8	96.1	0.1	-1.72	0.73	0.76	1.98	3.3	0.003	0.67	0.0	0.04	17.40	0.00	2.048	8.90	3.32	3.2	96.8	0.0	-0.47	2.92	0.75	0.86	2.07	6506	789	3	0	6	0	0	logfile
✔	8iFM	35421	2024-02-21	2023-02-18	2.92	3.32	3.14	3.3	0.003	0.65	0.0	0.04	19.79	0.01	1.990	18.40	0.63	5.2	94.8	0.0	-0.86	0.61	0.67	1.42	3.3	0.003	0.73	0.0	0.04	20.29	0.00	1.938	18.32	3.27	5.1	94.9	0.0	-0.99	1.35	0.56	0.68	1.51	30994	3366	20	160	4	0	0	logfile
✔	8iFK	35419	2024-02-13	2023-02-18	2.54	2.85	2.66	2.9	0.004	0.73	0.0	0.05	20.29	0.01	1.744	18.46	4.35	3.4	96.6	0.0	-0.23	0.69	0.81	3.19	2.9	0.004	0.59	0.0	0.04	20.09	0.00	1.974	14.70	2.17	3.4	96.6	0.0	-0.01	0.23	0.65	0.80	3.02	7632	823	5	41	1	0	0	logfile
✔	8iFL	35420	2024-02-21	2023-02-18	3.11	3.51	3.35	3.5	0.008	0.84	0.0	0.04	19.94	0.01	1.907	19.93	0.70	5.6	94.4	0.0	-0.84	0.60	0.69	1.26	3.5	0.004	0.68	0.0	0.04	20.12	0.00	1.884	19.22	4.77	5.7	94.3	0.0	-0.68	0.74	0.60	0.70	1.30	30976	3363	20	160	4	0	0	logfile
✔	8G7V	29825	2024-02-16	2023-02-17	3.9	4.01	3.87	3.9	0.007	0.85	0.0	0.05	16.75	0.01	2.246	5.87	0.42	6.0	94.0	0.0	-4.07	0.77	0.81	1.77	3.9	0.004	0.68	0.0	0.04	17.54	0.00	2.173	11.70	3.75	8.8	91.2	0.0	-1.09	0.56	0.77	0.82	1.45	14007	1621	8	45	3	0	0	logfile
✔	8G86	29837	2024-02-15	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.26	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.4	0.005	0.63	0.0	0.04	28.96	0.00	2.105	7.36	2.69	1.6	98.4	0.0	2.39	0.91	0.70	0.85	4.83	11972	759	10	290	0	0	0	logfile
✔	8iF8	35410	2024-02-14	2023-02-17	3.1	3.58	3.22	3.5	0.007	0.81	3.0	0.05	13.08	0.01	2.234	6.73	0.00	7.7	92.3	0.0	0.00	0.70	0.87	3.01	3.5	0.003	0.59	0.0	0.04	14.52	0.00	2.192	5.41	1.50	6.1	93.9	0.0	1.53	0.33	0.69	0.88	2.26	9307	1218	4	0	2	0	0	logfile
✔	8G85	29836	2024-02-17	2023-02-17	3.99	4.68	4.09	4.1	0.005	0.97	0.0	0.06	17.50	0.01	2.259	3.76	0.09	4.6	95.3	0.1	-1.62	0.78	0.73	1.29	4.2	0.006	0.81	0.0	0.05	14.56	0.00	2.097	17.61	2.08	7.5	92.5	0.0	-0.40	1.37	0.85	0.84	1.53	20090	2391	39	0	94	0	0	logfile
✔	8G8i	29856	2024-02-17	2023-02-17	3.92	4.26	4.11	4.2	0.004	0.55	0.0	0.04	16.26	0.00	2.245	2.69	0.00	3.4	96.6	0.0	-0.31	0.67	0.79	0.74	4.2	0.004	0.61	0.0	0.04	17.81	0.00	2.184	5.84	2.11	3.7	96.3	0.0	3.71	0.68	0.68	0.81	0.51	19335	2325	5	0	0	0	0	logfile
✔	8CLS	16718	2024-02-20	2023-02-17	4.0	3.68	3.80	3.5	0.007	0.83	0.0	0.05	14.26	0.01	2.133	4.13	1.94	8.1	91.6	0.3	-1.71	0.79	0.76	—	3.5	0.003	0.66	0.0	0.05	14.67	0.00	2.005	7.91	1.51	6.4	93.5	0.1	-1.54	0.66	0.80	0.77	—	28081	1840	8	0	0	0	13777	logfile
✔	8iFG	35416	2024-02-17	2023-02-17	3.2	3.71	3.30	3.7	0.006	0.75	0.0	0.05	16.27	0.01	2.044	13.39	5.26	8.4	91.5	0.2	-2.83	0.64	0.74	2.38	3.7	0.004	0.66	0.0	0.04	17.11	0.00	2.010	9.81	2.58	6.4	93.5	0.1	0.00	1.23	0.60	0.74	1.84	19068	2338	10	0	3	1	0	logfile
✔	8iFF	35415	2024-02-15	2023-02-17	3.1	3.34	3.19	3.3	0.004	0.63	0.0	0.04	18.24	0.01	2.153	9.51	0.27	5.2	94.8	0.0	-0.43	0.66	0.81	1.60	3.3	0.003	0.60	0.0	0.04	18.36	0.00	2.128	8.67	3.73	6.0	94.0	0.0	-0.33	0.35	0.64	0.81	1.54	13698	1736	4	0	2	0	0	logfile
✔	8G8G	29850	2024-02-16	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.41	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.66	0.0	0.03	28.32	0.00	2.137	11.61	0.51	2.7	97.3	0.0	1.94	1.57	0.91	0.87	1.85	14558	931	11	348	0	0	0	logfile
✔	8G8B	29845	2024-02-16	2023-02-17	4.3	7.82	4.33	3.2	0.004	0.64	0.0	0.04	28.76	0.00	2.061	8.20	1.98	1.8	98.1	0.1	1.94	0.87	0.75	—	3.2	0.007	0.74	0.0	0.04	29.00	0.01	2.105	28.71	0.00	3.3	96.7	0.0	1.11	1.96	0.90	0.82	—	14067	902	11	336	0	0	0	logfile
✔	8G88	29843	2024-02-16	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	27.72	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.008	0.79	0.0	0.04	29.84	0.01	2.050	38.26	0.00	3.1	96.9	0.0	0.56	2.59	0.91	0.81	—	13995	891	11	336	0	0	0	logfile
✔	8G8E	29846	2024-02-13	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.39	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.003	0.63	0.0	0.03	27.96	0.00	2.242	14.99	0.00	2.9	97.1	0.0	0.05	1.83	0.91	0.82	—	2464	140	3	64	0	0	0	logfile
✔	8G8F	29848	2024-02-21	2023-02-17	2.6	2.58	2.77	2.6	0.007	1.02	0.0	0.05	18.18	0.00	2.173	7.58	1.87	6.0	93.6	0.4	-0.22	0.65	0.87	4.09	2.6	0.003	0.57	0.0	0.04	16.98	0.00	2.123	5.53	3.77	4.8	94.8	0.4	0.11	0.32	0.65	0.87	3.79	30912	3928	16	0	32	0	0	logfile
✔	8G6Y	29788	2024-02-21	2023-02-16	2.09	1.85	2.01	1.9	0.007	0.89	0.0	0.05	23.26	0.03	1.446	5.72	3.72	3.5	96.3	0.2	-1.60	0.73	0.86	6.08	2.0	0.005	0.84	0.0	0.04	23.15	0.01	1.753	5.66	2.95	3.6	96.3	0.1	-0.24	1.19	0.73	0.89	5.92	93683	3175	69	3037	250	3460	0	logfile
✔	8G73	29795	2024-02-21	2023-02-16	2.5	2.70	2.67	2.8	0.006	0.86	2.0	0.07	14.23	0.01	1.478	20.46	1.29	3.8	96.0	0.2	-0.65	0.51	0.64	2.50	2.7	0.003	0.63	0.0	0.05	14.97	0.00	2.128	8.40	2.64	3.3	96.6	0.1	-0.22	0.62	0.63	0.85	2.90	28420	3562	20	0	47	0	0	logfile
✔	8G6V	29785	2024-02-15	2023-02-16	3.4	3.24	—	3.3	0.003	0.60	0.0	0.04	16.35	0.01	2.084	5.69	0.85	2.5	97.5	0.0	1.60	0.51	0.89	2.44	3.2	0.003	0.78	1.0	0.04	16.60	0.00	2.091	5.55	3.21	2.9	97.1	0.0	2.49	1.17	0.51	0.90	2.51	13736	1716	12	0	0	0	0	logfile

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