Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G6U	29783	2024-02-20	2023-02-16	3.16	3.57	3.22	3.5	0.006	0.99	3.0	0.07	19.48	0.01	1.945	14.33	3.79	7.6	91.5	1.0	-1.48	0.69	0.81	1.79	3.5	0.004	0.77	0.0	0.05	15.67	0.01	2.105	11.73	4.24	8.6	90.9	0.5	-1.32	0.67	0.72	0.88	2.44	26871	3114	60	0	192	0	0	logfile
✔	8CL4	16712	2024-02-18	2023-02-16	3.14	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.53	0.78	2.49	3.6	0.004	0.65	0.0	0.04	17.39	0.00	2.196	10.01	2.75	2.0	98.0	0.0	1.37	2.42	0.55	0.82	1.17	13335	1725	15	0	0	0	0	logfile
✔	8CKZ	16707	2024-02-16	2023-02-16	3.07	3.27	3.09	3.2	0.005	0.90	0.0	0.05	12.35	0.01	1.966	3.43	0.00	1.1	98.9	0.0	-1.16	0.50	0.80	4.33	3.2	0.003	0.55	0.0	0.04	15.90	0.00	2.070	7.72	2.09	0.9	99.1	0.0	1.92	1.10	0.51	0.82	3.90	13910	1800	15	0	0	0	0	logfile
✔	8CKV	16703	2024-02-15	2023-02-16	2.89	3.13	2.17	3.2	0.004	0.82	0.0	0.05	12.34	0.01	1.152	5.68	0.00	1.0	99.0	0.0	-0.51	0.61	0.76	4.15	3.2	0.004	0.56	0.0	0.04	16.02	0.00	2.224	7.75	1.97	1.4	98.6	0.0	1.54	0.44	0.62	0.80	4.06	9900	1272	6	0	0	0	0	logfile
✔	8CL3	16711	2024-02-15	2023-02-16	3.14	3.51	3.07	3.5	0.005	0.97	0.0	0.13	12.73	0.01	0.985	10.68	0.00	0.9	99.1	0.0	-1.02	0.59	0.70	2.88	3.5	0.003	0.59	0.0	0.04	16.25	0.00	2.299	7.82	1.76	0.7	99.3	0.0	1.64	0.54	0.46	0.66	2.78	10272	1350	12	0	0	0	0	logfile
✔	8G73	29795	2024-02-21	2023-02-16	2.5	2.70	2.67	2.8	0.006	0.86	2.0	0.07	14.23	0.01	1.478	20.46	1.29	3.8	96.0	0.2	-0.65	0.51	0.64	2.50	2.7	0.003	0.63	0.0	0.05	14.97	0.00	2.128	8.40	2.64	3.3	96.6	0.1	-0.22	0.62	0.63	0.85	2.90	28420	3562	20	0	47	0	0	logfile
✔	8G7L	29815	2024-02-13	2023-02-16	2.5	2.66	2.66	2.7	0.008	1.14	0.0	0.06	14.60	0.01	2.287	1.63	0.79	0.6	99.4	0.0	1.52	0.73	0.83	2.54	2.7	0.003	0.53	0.0	0.04	15.14	0.00	2.167	4.65	0.39	0.9	99.1	0.0	1.52	0.28	0.72	0.84	2.30	55510	7378	28	0	42	0	0	logfile
✔	8CLi	16713	2024-02-16	2023-02-16	3.2	3.42	3.34	3.3	0.004	0.72	0.0	0.05	16.63	0.01	1.973	2.62	0.00	2.4	97.6	0.0	-0.73	0.78	0.86	4.28	3.3	0.004	0.64	0.0	0.04	18.18	0.00	2.096	8.07	1.69	1.7	98.3	0.0	0.81	0.99	0.81	0.88	3.15	15955	1810	6	70	2	0	0	logfile
✔	8G7M	29816	2024-02-20	2023-02-16	3.2	3.51	3.34	3.5	0.003	0.49	0.0	0.04	14.08	0.00	2.057	4.88	0.00	0.8	99.2	0.0	2.22	0.75	0.84	2.02	3.5	0.003	0.65	1.0	0.04	14.24	0.00	1.881	6.33	0.67	1.1	98.9	0.0	2.06	0.31	0.75	0.86	1.89	26334	3505	14	0	21	0	0	logfile
✔	8G75	29797	2024-02-20	2023-02-16	3.4	3.74	3.57	3.7	0.004	0.70	0.0	0.05	15.32	0.01	2.017	12.82	0.61	3.4	96.5	0.1	-0.29	0.66	0.70	1.32	3.7	0.004	0.64	0.0	0.05	15.51	0.00	2.058	9.16	2.30	4.3	95.6	0.1	-0.01	0.76	0.73	0.82	1.52	28711	3598	20	0	47	0	0	logfile
✔	8G7J	29813	2024-02-20	2023-02-16	3.4	3.70	3.39	3.9	0.015	1.46	0.0	0.08	9.30	0.01	2.369	1.16	0.00	0.7	99.2	0.1	0.22	0.65	0.71	1.18	3.9	0.004	0.63	0.0	0.04	13.81	0.00	2.175	5.87	1.92	3.1	96.9	0.0	1.36	2.21	0.68	0.73	1.42	27461	3682	7	0	0	0	0	logfile
✔	8CLK	16715	2024-02-15	2023-02-16	3.5	3.77	3.61	3.7	0.005	0.75	0.0	0.05	13.29	0.01	2.217	4.17	0.00	2.6	97.4	0.0	-1.42	0.76	0.77	2.16	3.7	0.003	0.75	0.0	0.04	15.72	0.00	2.047	13.01	1.67	2.0	98.0	0.0	0.22	1.20	0.76	0.75	1.69	10799	1344	4	0	0	0	0	logfile
✔	8CLL	16717	2024-02-19	2023-02-16	3.4	3.64	3.50	3.5	0.003	0.66	0.0	0.05	12.97	0.01	1.984	2.24	0.00	2.1	97.9	0.0	-0.75	0.81	0.84	3.23	3.5	0.004	0.76	1.0	0.04	14.68	0.00	2.176	8.55	1.41	2.1	97.9	0.0	0.52	0.65	0.85	0.87	2.45	25226	3152	8	0	4	0	0	logfile
✔	8G6Y	29788	2024-02-21	2023-02-16	2.09	1.85	2.01	1.9	0.007	0.89	0.0	0.05	23.26	0.03	1.446	5.72	3.72	3.5	96.3	0.2	-1.60	0.73	0.86	6.08	2.0	0.005	0.84	0.0	0.04	23.15	0.01	1.753	5.66	2.95	3.6	96.3	0.1	-0.24	1.19	0.73	0.89	5.92	93683	3175	69	3037	250	3460	0	logfile
✘	8G6X	29787	2024-02-21	2023-02-16	2.31	1.96	2.20	2.0	0.011	0.99	0.0	0.06	23.50	0.03	1.474	7.58	5.85	4.1	95.8	0.2	-2.02	0.68	0.83	5.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93873	3177	72	3037	252	3462	0	logfile
✔	8CL1	16709	2024-02-16	2023-02-16	3.35	3.67	2.87	3.6	0.008	0.93	0.0	0.06	12.18	0.01	0.393	14.11	0.54	0.0	99.1	0.9	-1.05	0.61	0.75	3.54	3.7	0.003	0.59	0.0	0.04	15.24	0.00	2.182	11.26	0.72	2.1	97.4	0.5	1.93	0.64	0.65	0.78	3.06	10494	1362	12	0	0	0	0	logfile
✔	8CKX	16705	2024-02-15	2023-02-16	2.97	3.24	2.98	3.3	0.005	0.87	0.0	0.06	12.70	0.01	2.453	0.76	0.19	1.0	99.0	0.0	-1.11	0.60	0.76	4.18	3.3	0.003	0.52	0.0	0.04	15.49	0.00	2.204	6.77	1.13	0.6	99.4	0.0	2.37	0.50	0.61	0.78	3.54	9857	1265	6	0	0	0	0	logfile
✔	8CL0	16708	2024-02-15	2023-02-16	3.12	3.34	3.14	3.4	0.005	0.87	0.0	0.06	12.80	0.01	2.091	3.45	0.18	0.2	99.8	0.0	-0.50	0.64	0.77	4.37	3.4	0.003	0.57	0.0	0.04	15.50	0.00	2.189	8.11	1.18	1.1	98.9	0.0	2.13	0.53	0.65	0.80	3.34	10387	1355	12	0	0	0	0	logfile
✔	8CL2	16710	2024-02-18	2023-02-16	3.45	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.54	0.79	2.49	3.6	0.003	0.64	0.0	0.04	17.16	0.00	2.192	9.41	1.97	2.1	97.9	0.0	1.49	2.42	0.56	0.83	1.20	13335	1725	15	0	0	0	0	logfile
✔	8CLJ	16714	2024-02-21	2023-02-16	3.2	3.42	—	3.3	0.004	0.75	0.0	0.05	16.68	0.01	1.951	2.74	0.00	2.2	97.8	0.0	-0.77	0.81	0.86	4.15	3.3	0.004	0.64	0.0	0.04	18.29	0.00	2.054	8.05	1.69	1.9	98.1	0.0	0.86	1.31	0.85	0.89	3.12	31910	3620	12	140	4	0	0	logfile

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