Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8G7N	29817	2024-02-15	2023-02-16	2.7	2.83	2.69	2.8	0.003	0.57	0.0	0.05	13.36	0.00	2.109	2.56	0.20	1.0	99.0	0.0	1.66	0.77	0.85	3.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66108	8778	42	0	42	0	0	logfile
✔	8G7L	29815	2024-02-13	2023-02-16	2.5	2.66	2.66	2.7	0.008	1.14	0.0	0.06	14.60	0.01	2.287	1.63	0.79	0.6	99.4	0.0	1.52	0.73	0.83	2.54	2.7	0.003	0.53	0.0	0.04	15.14	0.00	2.167	4.65	0.39	0.9	99.1	0.0	1.52	0.28	0.72	0.84	2.30	55510	7378	28	0	42	0	0	logfile
✔	8G7M	29816	2024-02-20	2023-02-16	3.2	3.51	3.34	3.5	0.003	0.49	0.0	0.04	14.08	0.00	2.057	4.88	0.00	0.8	99.2	0.0	2.22	0.75	0.84	2.02	3.5	0.003	0.65	1.0	0.04	14.24	0.00	1.881	6.33	0.67	1.1	98.9	0.0	2.06	0.31	0.75	0.86	1.89	26334	3505	14	0	21	0	0	logfile
✔	8CLi	16713	2024-02-16	2023-02-16	3.2	3.42	3.34	3.3	0.004	0.72	0.0	0.05	16.63	0.01	1.973	2.62	0.00	2.4	97.6	0.0	-0.73	0.78	0.86	4.28	3.3	0.004	0.64	0.0	0.04	18.18	0.00	2.096	8.07	1.69	1.7	98.3	0.0	0.81	0.99	0.81	0.88	3.15	15955	1810	6	70	2	0	0	logfile
✔	8G6U	29783	2024-02-20	2023-02-16	3.16	3.57	3.22	3.5	0.006	0.99	3.0	0.07	19.48	0.01	1.945	14.33	3.79	7.6	91.5	1.0	-1.48	0.69	0.81	1.79	3.5	0.004	0.77	0.0	0.05	15.67	0.01	2.105	11.73	4.24	8.6	90.9	0.5	-1.32	0.67	0.72	0.88	2.44	26871	3114	60	0	192	0	0	logfile
✔	8iEG	35381	2024-02-16	2023-02-15	3.44	4.03	3.54	3.3	0.004	0.60	0.0	0.04	25.79	0.00	1.714	11.46	1.43	1.8	98.2	0.0	0.84	0.86	0.77	1.73	3.3	0.003	0.67	0.0	0.04	26.86	0.00	2.136	14.23	2.14	2.5	97.5	0.0	1.50	0.77	0.91	0.86	1.43	14102	1035	15	294	4	0	0	logfile
✔	8iEJ	35383	2024-02-16	2023-02-15	3.12	3.65	3.13	3.1	0.006	0.64	0.0	0.04	26.50	0.00	1.421	11.02	1.32	1.9	98.1	0.0	1.90	0.90	0.86	2.06	3.1	0.003	0.62	0.0	0.04	26.73	0.00	2.122	11.80	1.92	2.8	97.2	0.0	2.10	0.45	0.90	0.88	1.33	14086	1030	15	294	4	0	0	logfile
✔	8iEM	35386	2024-02-13	2023-02-15	3.35	3.87	3.59	3.9	0.003	0.69	0.0	0.04	16.41	0.01	2.211	7.27	0.58	6.2	93.7	0.1	-1.00	0.51	0.55	-0.19	3.9	0.003	0.71	0.0	0.04	17.31	0.01	2.071	9.90	3.36	8.0	92.0	0.0	-1.17	0.92	0.56	0.72	0.73	7829	1011	2	0	3	0	0	logfile
✔	8iEN	35387	2024-02-13	2023-02-15	3.25	3.66	3.30	7.2	0.004	1.21	0.0	0.04	14.04	0.00	2.168	8.43	0.24	5.0	94.9	0.1	-2.18	0.18	0.00	-0.05	3.5	0.003	1.04	0.0	0.04	16.13	0.01	2.094	16.86	1.18	8.4	91.6	0.0	-1.45	1.69	0.35	0.28	0.69	7678	991	2	0	4	0	0	logfile
✘	8iES	35392	2024-02-13	2023-02-15	3.73	4.01	3.68	4.0	0.003	1.16	0.0	0.04	13.70	0.00	2.268	5.19	0.00	6.0	94.0	0.0	-3.84	0.60	0.66	0.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7965	1026	2	0	3	0	0	logfile
✔	8G6o	29776	2024-02-15	2023-02-15	3.1	2.98	3.00	3.1	0.004	0.69	0.0	0.04	17.30	0.00	2.107	3.87	0.00	2.4	97.6	0.0	1.88	0.47	0.78	2.94	3.1	0.003	0.49	0.0	0.04	17.59	0.00	1.929	6.46	0.84	3.0	97.0	0.0	2.61	0.31	0.47	0.80	2.65	13132	845	5	0	0	0	6522	logfile
✔	8G6M	29774	2024-02-18	2023-02-15	3.1	3.00	3.09	3.0	0.004	0.71	0.0	0.04	13.63	0.01	2.143	2.33	0.43	1.9	98.1	0.0	0.86	0.54	0.74	2.43	3.0	0.002	0.50	0.0	0.04	15.30	0.00	2.028	5.22	1.20	2.1	97.9	0.0	2.26	0.65	0.56	0.79	2.03	21438	1379	7	0	0	0	10657	logfile
✔	8G6F	29765	2024-02-25	2023-02-15	2.58	2.79	2.70	2.7	0.004	0.51	0.0	0.04	16.10	0.01	2.197	2.66	0.51	1.8	98.2	0.0	1.59	0.82	0.91	4.61	2.7	0.006	0.60	0.0	0.05	16.70	0.00	2.166	5.30	2.02	1.7	98.3	0.0	1.52	0.22	0.83	0.92	4.63	52394	6466	60	0	4	599	0	logfile
✔	8G6E	29764	2024-02-25	2023-02-15	2.18	1.87	2.24	2.0	0.006	0.64	0.0	0.15	17.26	0.00	1.943	3.00	0.63	2.0	98.0	0.0	0.88	0.69	0.85	5.05	2.0	0.005	0.67	0.0	0.05	18.07	0.00	2.130	5.32	1.72	1.9	98.1	0.0	0.95	0.39	0.70	0.85	5.08	52266	6490	62	0	6	218	0	logfile
✔	8iEo	35388	2024-02-16	2023-02-15	3.78	3.89	3.63	3.9	0.004	1.20	0.0	0.04	15.04	0.00	2.029	3.19	0.11	3.8	96.2	0.0	0.87	0.58	0.64	0.53	3.9	0.002	0.84	0.0	0.04	15.74	0.00	1.948	5.47	1.25	6.7	93.3	0.0	-0.07	0.73	0.63	0.74	1.02	16260	1031	2	0	3	0	8260	logfile
✔	8iEK	35384	2024-02-16	2023-02-15	3.2	3.88	3.60	3.9	0.003	0.67	0.0	0.04	14.69	0.00	2.245	5.26	0.23	5.4	94.3	0.3	0.51	0.54	0.64	0.96	3.9	0.003	0.62	0.0	0.04	15.86	0.01	2.106	6.97	0.90	7.3	92.2	0.5	-0.49	0.82	0.56	0.70	1.33	16344	1036	2	0	2	0	8299	logfile
✔	8iER	35391	2024-02-16	2023-02-15	4.87	5.08	4.32	4.9	0.002	0.53	0.0	0.04	12.91	0.00	1.978	6.35	0.00	7.4	92.3	0.3	-0.61	0.48	0.46	—	4.9	0.002	0.56	0.0	0.04	12.81	0.00	1.919	8.70	0.00	10.5	89.2	0.3	-1.03	1.27	0.52	0.56	—	15257	967	2	0	1	0	7758	logfile
✔	8G6i	29770	2024-02-15	2023-02-15	4.23	4.53	4.35	4.2	0.003	0.68	0.0	0.05	13.13	0.01	2.143	10.55	0.00	9.3	90.4	0.3	-3.49	0.69	0.42	—	4.2	0.003	0.75	0.0	0.05	13.86	0.00	2.177	18.67	0.00	12.8	86.9	0.3	-3.82	2.53	0.73	0.53	—	13287	1665	5	0	4	0	0	logfile
✔	8G6N	29775	2024-02-18	2023-02-15	3.5	3.27	3.51	3.2	0.004	0.74	0.0	0.04	16.67	0.01	2.047	4.48	0.17	2.6	97.4	0.0	1.92	0.61	0.74	1.62	3.2	0.003	0.52	0.0	0.04	16.87	0.00	1.953	6.86	1.64	2.8	97.2	0.0	2.66	0.37	0.62	0.78	1.66	21450	1379	7	0	0	0	10672	logfile
✔	8G6K	29772	2024-02-14	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.004	0.68	0.0	0.04	4.83	0.00	2.269	4.05	0.00	8.2	91.8	0.0	-0.23	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile

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