Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iD8	35359	2024-02-14	2023-02-12	3.0	3.25	3.12	3.3	0.004	0.66	0.0	0.04	13.18	0.00	1.393	8.92	0.33	3.3	96.7	0.0	-0.43	0.67	0.78	2.54	3.3	0.004	0.61	0.0	0.04	15.84	0.00	2.182	6.86	2.88	3.5	96.5	0.0	0.23	1.10	0.62	0.79	2.35	8635	1137	6	0	1	0	0	logfile
✔	8iD3	35356	2024-02-14	2023-02-12	3.1	3.38	3.17	3.3	0.005	0.85	0.0	0.05	13.65	0.01	2.199	8.84	0.76	3.9	96.1	0.0	-1.42	0.65	0.79	3.03	3.3	0.002	0.55	0.0	0.04	14.90	0.00	2.203	6.18	2.17	3.5	96.5	0.0	0.17	0.36	0.65	0.80	2.40	8742	1141	5	0	1	0	0	logfile
✔	8iD4	35357	2024-02-14	2023-02-12	3.1	3.26	3.09	3.2	0.004	0.73	1.0	0.05	12.92	0.01	2.217	8.68	0.22	3.7	96.1	0.2	-1.06	0.65	0.79	3.25	3.2	0.003	0.55	0.0	0.04	14.78	0.00	2.206	5.77	1.64	3.7	96.3	0.0	0.08	0.31	0.68	0.83	2.88	8665	1134	6	0	1	1	0	logfile
✔	8iDC	35363	2024-02-14	2023-02-12	3.9	5.12	3.90	3.9	0.004	1.02	0.0	0.05	10.68	0.01	2.221	5.95	0.00	6.9	92.9	0.2	-3.33	0.77	0.83	-0.28	3.9	0.004	0.72	0.0	0.04	12.29	0.00	2.093	21.46	1.49	8.2	91.7	0.1	-1.22	0.43	0.77	0.84	0.06	9701	1342	5	0	0	0	0	logfile
✔	8iDB	35362	2024-02-13	2023-02-12	3.9	4.38	3.73	4.2	0.005	1.04	0.0	0.06	11.65	0.01	2.256	5.21	0.32	5.8	93.7	0.5	-3.59	0.69	0.73	0.55	4.2	0.004	0.70	0.0	0.04	14.50	0.00	2.125	16.00	5.67	8.0	91.7	0.3	-1.47	0.49	0.70	0.76	0.45	6835	982	4	0	0	0	0	logfile
✔	8iDD	35364	2024-02-14	2023-02-12	4.0	4.48	3.92	4.1	0.004	1.02	0.0	0.06	12.75	0.00	2.302	5.78	0.24	4.7	95.3	0.0	-3.26	0.74	0.78	—	4.1	0.002	0.67	0.0	0.04	13.84	0.00	2.191	14.44	2.84	4.7	95.3	0.0	-0.85	0.42	0.74	0.79	—	8768	1199	7	0	2	0	0	logfile
✔	8G59	29736	2024-02-14	2023-02-12	2.64	2.58	—	2.9	0.005	0.76	1.0	0.05	12.18	0.01	1.930	10.26	0.22	3.8	96.1	0.1	-0.15	0.82	0.76	2.19	2.9	0.005	0.67	0.0	0.04	15.32	0.01	2.008	9.32	1.54	4.6	95.4	0.0	0.64	0.49	0.82	0.80	1.67	8583	1118	5	0	1	0	0	logfile
✔	8iD9	35360	2024-02-13	2023-02-12	3.0	3.00	—	2.9	0.005	0.73	0.0	0.05	13.95	0.02	2.182	9.55	0.13	2.7	97.3	0.0	-0.21	0.88	0.84	3.28	2.9	0.004	0.60	0.0	0.04	14.83	0.01	2.165	6.71	1.30	3.3	96.7	0.0	0.46	1.48	0.89	0.87	2.85	7996	1095	5	0	1	0	0	logfile
✔	8G57	29735	2024-02-16	2023-02-11	3.07	3.58	3.10	3.3	0.004	0.65	0.0	0.04	25.92	0.01	1.682	7.99	0.12	3.1	96.1	0.9	-0.11	0.81	0.75	2.31	3.2	0.003	0.62	0.0	0.04	26.98	0.00	2.184	9.48	1.78	3.3	96.5	0.3	1.22	0.57	0.86	0.89	1.87	14402	1067	11	300	0	0	0	logfile
✔	8iBV	35346	2024-02-17	2023-02-10	3.19	2.21	3.19	3.1	0.004	0.55	0.0	0.04	7.47	0.01	2.109	4.54	0.10	1.1	98.9	0.0	-0.45	0.66	0.65	2.45	2.0	0.017	0.76	0.0	0.04	13.22	0.01	1.929	4.76	1.53	2.7	97.3	0.0	1.52	0.81	0.73	0.77	3.41	18081	1152	6	0	0	0	9023	logfile
✔	8Cio	16683	2024-02-13	2023-02-10	3.5	3.28	3.48	3.8	0.002	0.55	0.0	0.05	11.52	0.00	2.418	8.03	0.00	8.9	91.1	0.0	-1.60	0.73	0.83	2.66	3.8	0.003	0.72	0.0	0.05	13.86	0.00	2.196	8.65	3.33	11.3	88.0	0.6	-1.88	0.50	0.72	0.84	2.69	5655	795	5	0	0	0	0	logfile
✔	8iBY	35349	2024-02-14	2023-02-10	3.47	3.81	3.66	3.7	0.003	0.62	0.0	0.03	23.52	0.01	2.187	11.40	0.00	4.6	95.3	0.1	0.06	0.77	0.76	1.66	3.7	0.002	0.59	0.0	0.03	23.43	0.00	2.184	11.40	2.99	4.1	95.8	0.1	0.43	1.59	0.76	0.77	1.46	10503	793	3	198	1	0	0	logfile
✔	8iC0	35351	2024-02-14	2023-02-10	3.41	3.75	3.43	3.8	0.003	0.55	0.0	0.04	13.84	0.00	2.163	8.36	0.10	4.3	95.7	0.0	-1.57	0.64	0.75	2.29	3.8	0.002	0.59	0.0	0.04	16.02	0.00	2.107	9.78	1.95	3.6	96.4	0.0	-0.73	0.42	0.61	0.74	1.76	9553	1228	6	0	0	0	0	logfile
✘	8iBZ	35350	2024-02-14	2023-02-10	3.04	3.25	3.07	3.1	0.003	0.60	0.0	0.04	23.46	0.00	2.190	9.49	0.29	4.3	95.6	0.1	0.68	0.73	0.74	1.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10273	817	3	180	1	0	0	logfile
✔	8G4M	29725	2024-02-18	2023-02-10	2.95	3.53	2.95	3.3	0.004	0.64	0.0	0.05	18.25	0.00	2.132	4.25	2.43	2.2	97.8	0.0	0.60	0.80	0.88	3.59	3.3	0.004	0.61	0.0	0.04	15.47	0.00	2.170	5.95	2.09	2.1	97.9	0.0	0.58	0.33	0.82	0.90	3.46	20584	2432	61	0	119	0	0	logfile
✔	8CiM	16678	2024-02-21	2023-02-10	3.0	3.24	3.03	3.2	0.004	0.54	0.0	0.05	10.29	0.00	2.186	4.60	0.95	4.2	95.8	0.0	0.01	0.71	0.81	3.63	3.2	0.003	0.56	0.0	0.04	13.59	0.00	2.155	7.04	1.81	3.5	96.5	0.0	0.20	0.90	0.77	0.88	3.17	29928	3765	24	0	48	0	0	logfile
✔	8G4T	29731	2024-02-18	2023-02-10	2.81	3.51	2.81	3.2	0.005	0.66	0.0	0.05	17.61	0.00	2.105	4.00	1.38	3.4	96.6	0.0	-0.34	0.83	0.88	3.35	3.2	0.003	0.63	0.0	0.04	15.27	0.00	2.214	3.34	1.90	2.7	97.3	0.0	0.01	1.16	0.82	0.85	2.93	20739	2437	63	0	129	0	0	logfile
✔	8iBN	35344	2024-02-14	2023-02-10	3.03	3.55	3.13	3.5	0.007	0.99	0.0	0.06	14.42	0.00	2.296	8.00	0.00	4.0	96.0	0.0	-1.98	0.60	0.53	0.83	3.5	0.002	0.56	0.0	0.05	15.69	0.00	2.162	13.08	1.90	3.9	96.1	0.0	0.02	1.14	0.62	0.56	1.11	8940	1224	8	0	8	0	0	logfile
✘	8G4X	29733	2024-02-21	2023-02-10	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31102	1895	19	0	38	0	15204	logfile
✘	8G4o	29728	2024-02-17	2023-02-10	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17353	2094	20	0	39	0	0	logfile

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