Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iBX	35348	2024-02-14	2023-02-10	3.74	4.12	3.87	3.9	0.004	0.59	0.0	0.04	22.08	0.00	1.982	10.30	0.79	4.8	95.0	0.2	0.88	0.82	0.81	1.03	3.9	0.006	0.71	0.0	0.04	22.30	0.00	2.107	16.28	4.61	5.5	94.4	0.1	0.62	1.17	0.83	0.82	1.18	9502	922	5	108	2	0	0	logfile
✔	8iBW	35347	2024-02-14	2023-02-10	3.6	4.08	3.81	3.9	0.004	0.73	0.0	0.04	23.49	0.01	2.018	12.05	0.39	6.1	93.5	0.3	-0.62	0.82	0.79	1.45	3.9	0.003	0.63	0.0	0.04	23.16	0.00	2.219	13.39	3.16	5.3	94.4	0.3	0.53	1.62	0.82	0.80	1.06	9848	922	5	125	2	0	0	logfile
✔	8G4E	29718	2024-02-13	2023-02-09	2.98	3.13	2.86	3.1	0.003	0.53	0.0	0.04	15.97	0.00	2.266	7.32	2.16	2.3	97.7	0.0	0.42	0.59	0.82	2.62	3.1	0.003	0.55	0.0	0.04	17.88	0.00	2.211	6.51	4.63	2.6	97.4	0.0	0.84	0.37	0.58	0.82	2.15	3097	396	2	0	1	0	0	logfile
✔	8iB2	35329	2024-02-16	2023-02-09	3.8	3.87	3.55	3.8	0.003	0.69	0.0	0.05	13.90	0.01	2.232	3.61	0.00	2.2	97.8	0.0	-0.01	0.59	0.86	1.93	3.8	0.003	0.58	0.0	0.04	15.03	0.00	2.159	5.23	1.34	2.6	97.4	0.0	0.97	1.40	0.64	0.89	1.69	15229	1931	11	0	5	0	0	logfile
✔	8G4D	29717	2024-02-16	2023-02-09	3.6	3.83	3.76	3.7	0.003	0.68	0.0	0.04	15.33	0.00	2.213	10.57	0.64	6.3	93.7	0.0	0.05	0.69	0.73	2.01	3.7	0.003	0.63	0.0	0.04	16.87	0.00	2.180	10.53	1.47	5.3	94.7	0.1	0.44	0.45	0.70	0.77	1.93	14402	1795	7	0	2	0	0	logfile
✔	8iB8	35335	2024-02-17	2023-02-09	4.42	4.78	6.09	4.4	0.003	0.71	0.0	0.04	14.13	0.00	2.062	24.05	0.01	6.4	93.6	0.0	-1.11	0.82	0.72	—	4.4	0.003	0.64	0.0	0.04	14.25	0.00	2.079	19.71	0.00	5.9	94.1	0.0	-0.32	1.17	0.83	0.75	—	68524	8948	18	0	0	0	0	logfile
✔	8G4C	29716	2024-02-16	2023-02-09	3.1	3.36	3.19	3.4	0.004	0.59	0.0	0.04	16.59	0.00	2.236	6.06	0.25	4.4	95.6	0.0	0.73	0.62	0.77	2.20	3.3	0.004	0.53	0.0	0.04	17.25	0.00	2.173	5.89	1.65	4.7	95.3	0.0	0.72	0.27	0.65	0.85	2.30	14503	1803	8	0	3	0	0	logfile
✔	8Ci2	16666	2024-02-18	2023-02-08	4.4	4.61	4.35	4.3	0.005	0.62	0.0	0.05	16.54	0.00	2.014	6.56	0.00	14.9	85.1	0.0	-3.01	0.80	0.69	—	4.3	0.003	0.65	0.0	0.04	13.18	0.00	1.447	14.63	0.00	15.4	84.5	0.1	-3.29	0.94	0.86	0.80	—	21547	1393	18	0	20	0	10298	logfile
✔	8Ci5	16670	2024-02-14	2023-02-08	3.2	2.86	3.15	3.1	0.014	1.19	0.0	0.07	15.44	0.01	2.190	3.74	0.00	8.3	91.1	0.6	-3.88	0.79	0.85	4.05	3.1	0.002	0.56	0.0	0.04	16.11	0.00	2.225	5.34	0.63	3.3	96.7	0.1	0.59	0.93	0.78	0.86	3.27	10365	1258	2	11	0	0	0	logfile
✔	8G3K	29700	2024-02-13	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.003	0.48	0.0	0.03	17.08	0.00	2.386	4.15	2.88	0.7	99.3	0.0	4.64	1.15	0.47	0.83	5.16	2244	285	2	0	0	0	0	logfile
✔	8iA8	35298	2024-02-14	2023-02-08	2.86	3.35	2.89	3.2	0.005	0.63	0.0	0.04	12.72	0.00	2.148	5.76	0.42	4.4	95.6	0.0	-1.21	0.72	0.87	4.30	3.2	0.003	0.59	0.0	0.04	15.19	0.00	2.179	5.42	2.20	3.5	96.5	0.0	0.49	0.35	0.66	0.86	3.39	8810	1136	6	0	0	0	0	logfile
✔	8G3M	29704	2024-02-17	2023-02-08	3.0	3.57	3.06	3.3	0.016	1.79	0.0	0.09	16.80	0.01	2.313	0.14	0.21	4.6	95.2	0.2	-0.86	0.82	0.86	3.65	3.3	0.003	0.74	0.0	0.05	13.81	0.00	2.144	5.87	1.80	4.1	95.7	0.2	-0.60	1.28	0.79	0.81	2.98	18667	2272	38	0	97	0	0	logfile
✔	8G3o	29706	2024-02-17	2023-02-08	3.1	3.51	3.05	3.3	0.015	1.71	7.0	0.09	13.44	0.01	2.218	0.31	0.00	3.8	95.6	0.6	-0.63	0.84	0.91	4.38	3.3	0.006	0.72	0.0	0.05	13.85	0.00	2.178	6.78	1.65	4.3	95.6	0.2	-0.26	1.32	0.82	0.90	3.80	18487	2272	38	0	81	0	0	logfile
✔	8iAi	35302	2024-02-14	2023-02-08	3.5	3.80	3.59	3.7	0.003	0.75	0.0	0.05	13.69	0.01	2.163	3.85	0.00	2.6	97.4	0.0	0.26	0.80	0.85	1.49	3.7	0.005	0.62	0.0	0.04	15.00	0.00	2.120	6.73	1.56	2.9	97.1	0.0	1.32	1.43	0.81	0.86	1.49	60300	7612	42	0	11	0	0	logfile
✔	8G3R	29709	2024-02-16	2023-02-08	2.3	3.00	2.32	2.8	0.014	1.67	4.0	0.09	14.04	0.01	2.187	0.45	0.06	3.4	96.4	0.2	-0.80	0.84	0.92	6.44	2.8	0.003	0.64	0.0	0.05	13.57	0.00	2.129	4.79	1.03	2.6	97.2	0.2	0.07	0.44	0.75	0.88	5.40	14899	1790	38	0	86	0	0	logfile
✔	8G3V	29710	2024-02-17	2023-02-08	2.2	2.84	2.21	2.7	0.014	1.61	4.0	0.09	14.34	0.01	2.257	0.54	0.00	3.9	95.8	0.3	-0.74	0.83	0.93	6.59	2.7	0.003	0.61	0.0	0.04	14.82	0.00	2.195	3.73	0.71	2.3	97.6	0.2	0.24	0.94	0.76	0.90	5.46	20045	2500	28	0	61	0	0	logfile
✔	8G3Z	29711	2024-02-17	2023-02-08	2.3	3.09	2.40	2.9	0.013	1.66	4.0	0.09	14.36	0.01	2.386	0.97	2.16	4.7	95.1	0.2	-2.34	0.86	0.92	4.85	2.8	0.004	0.65	0.0	0.04	15.98	0.00	2.202	9.16	1.73	2.5	97.3	0.2	-0.73	2.66	0.81	0.91	4.75	19485	2512	16	0	13	0	0	logfile
✔	8G3N	29705	2024-02-18	2023-02-08	2.9	3.49	2.87	3.2	0.016	1.76	0.0	0.09	14.52	0.01	2.302	0.08	0.00	4.9	94.9	0.2	-0.63	0.88	0.91	4.67	3.2	0.003	0.71	0.0	0.04	13.83	0.01	2.173	4.48	1.87	3.5	96.4	0.2	-0.19	0.56	0.84	0.88	3.39	20321	2512	39	0	81	0	0	logfile
✔	8G3P	29707	2024-02-18	2023-02-08	2.5	3.17	2.55	2.9	0.015	1.64	8.0	0.09	13.93	0.01	2.314	0.38	0.00	3.9	95.7	0.5	-0.75	0.87	0.94	5.97	2.9	0.003	0.65	0.0	0.04	13.79	0.00	2.273	5.16	1.31	3.1	96.8	0.2	-0.06	1.53	0.82	0.90	5.11	20321	2512	40	0	81	0	0	logfile
✔	8G40	29712	2024-02-17	2023-02-08	2.8	3.23	2.72	3.1	0.015	1.66	2.0	0.09	17.44	0.01	2.196	0.58	0.42	4.4	95.3	0.3	-0.75	0.82	0.92	5.82	3.1	0.003	0.66	0.0	0.04	14.07	0.00	2.167	6.33	1.61	3.0	96.7	0.2	-0.07	0.46	0.78	0.90	4.05	18650	2263	38	0	97	0	0	logfile

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