Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G40	29712	2024-02-17	2023-02-08	2.8	3.23	2.72	3.1	0.015	1.66	2.0	0.09	17.44	0.01	2.196	0.58	0.42	4.4	95.3	0.3	-0.75	0.82	0.92	5.82	3.1	0.003	0.66	0.0	0.04	14.07	0.00	2.167	6.33	1.61	3.0	96.7	0.2	-0.07	0.46	0.78	0.90	4.05	18650	2263	38	0	97	0	0	logfile
✔	8G3P	29707	2024-02-18	2023-02-08	2.5	3.17	2.55	2.9	0.015	1.64	8.0	0.09	13.93	0.01	2.314	0.38	0.00	3.9	95.7	0.5	-0.75	0.87	0.94	5.97	2.9	0.003	0.65	0.0	0.04	13.79	0.00	2.273	5.16	1.31	3.1	96.8	0.2	-0.06	1.53	0.82	0.90	5.11	20321	2512	40	0	81	0	0	logfile
✔	8G3N	29705	2024-02-18	2023-02-08	2.9	3.49	2.87	3.2	0.016	1.76	0.0	0.09	14.52	0.01	2.302	0.08	0.00	4.9	94.9	0.2	-0.63	0.88	0.91	4.67	3.2	0.003	0.71	0.0	0.04	13.83	0.01	2.173	4.48	1.87	3.5	96.4	0.2	-0.19	0.56	0.84	0.88	3.39	20321	2512	39	0	81	0	0	logfile
✔	8G46	29714	2024-02-14	2023-02-08	2.2	2.34	2.28	2.4	0.009	0.98	0.0	0.06	15.97	0.01	2.207	6.43	1.70	3.0	97.0	0.0	-0.25	0.54	0.79	4.41	2.4	0.002	0.62	0.0	0.04	16.34	0.00	2.226	5.02	0.96	2.4	97.6	0.0	0.24	0.22	0.62	0.83	4.27	8603	1064	7	0	2	110	0	logfile
✔	8G3Z	29711	2024-02-17	2023-02-08	2.3	3.09	2.40	2.9	0.013	1.66	4.0	0.09	14.36	0.01	2.386	0.97	2.16	4.7	95.1	0.2	-2.34	0.86	0.92	4.85	2.8	0.004	0.65	0.0	0.04	15.98	0.00	2.202	9.16	1.73	2.5	97.3	0.2	-0.73	2.66	0.81	0.91	4.75	19485	2512	16	0	13	0	0	logfile
✔	8G3Q	29708	2024-02-17	2023-02-08	2.3	3.07	2.34	2.8	0.014	1.71	3.0	0.09	18.86	0.01	2.222	0.91	0.21	3.2	96.4	0.4	-0.93	0.86	0.94	6.55	2.8	0.006	0.86	0.0	0.05	13.90	0.00	2.153	8.79	0.72	2.9	96.9	0.2	-0.17	0.93	0.78	0.90	5.70	18618	2266	38	0	96	0	0	logfile
✔	8i9W	35286	2024-02-19	2023-02-07	3.1	2.95	3.05	2.9	0.004	0.76	4.0	0.05	20.73	0.01	1.953	12.13	0.63	4.9	94.8	0.2	-0.19	0.76	0.76	2.25	2.9	0.004	0.62	0.0	0.04	21.24	0.00	1.984	10.84	2.26	4.5	95.4	0.1	0.52	0.67	0.76	0.76	2.34	136840	10762	55	2419	3	0	0	logfile
✔	8i9V	35285	2024-02-20	2023-02-07	3.1	3.01	3.10	3.0	0.005	0.85	2.0	0.05	22.00	0.01	2.101	5.79	1.08	3.9	96.0	0.2	-2.63	0.73	0.79	2.01	3.0	0.004	0.62	1.0	0.04	21.49	0.00	1.713	9.81	2.67	3.8	96.2	0.1	1.04	2.22	0.80	0.83	2.29	138001	11303	60	2408	4	0	0	logfile
✔	8i9S	35282	2024-02-13	2023-02-07	3.26	3.55	3.33	3.6	0.002	0.56	0.0	0.04	12.77	0.00	2.260	5.60	0.00	4.5	95.5	0.0	0.32	0.68	0.75	2.20	3.6	0.004	0.66	0.0	0.04	15.09	0.00	2.078	5.35	1.89	5.1	94.9	0.0	0.60	1.52	0.72	0.81	2.24	8123	1113	5	0	0	0	0	logfile
✔	8G3G	29695	2024-02-13	2023-02-07	3.5	3.73	2.78	3.7	0.007	1.15	2.0	0.08	19.09	0.01	2.216	12.71	9.45	8.0	92.0	0.0	-2.51	0.76	0.73	1.09	3.6	0.006	0.90	0.0	0.05	18.00	0.01	2.053	18.61	10.82	9.7	90.3	0.0	-2.51	1.16	0.77	0.76	1.08	7020	900	10	0	0	0	0	logfile
✔	8i9U	35284	2024-02-15	2023-02-07	3.1	3.25	3.24	3.3	0.001	0.42	0.0	0.04	15.88	0.00	2.250	4.20	1.78	12.1	87.2	0.7	-2.67	0.56	0.55	0.11	3.3	0.003	0.64	0.0	0.04	16.77	0.00	2.177	5.95	2.02	5.5	94.4	0.1	-0.46	0.71	0.69	0.74	0.59	65141	8483	28	0	10	0	0	logfile
✔	8G3B	29691	2024-02-16	2023-02-07	3.5	3.74	3.54	3.7	0.004	0.66	0.0	0.04	15.66	0.00	2.251	5.75	0.26	5.6	94.4	0.0	0.87	0.63	0.74	1.39	3.7	0.003	0.55	0.0	0.04	16.90	0.00	2.266	5.99	1.98	5.2	94.7	0.1	1.02	0.33	0.63	0.75	0.93	14395	1791	7	0	3	0	0	logfile
✔	8G3A	29690	2024-02-16	2023-02-07	3.4	3.69	3.48	3.7	0.005	0.72	0.0	0.04	15.96	0.00	2.088	6.37	0.06	5.8	94.0	0.1	0.42	0.60	0.71	1.20	3.7	0.003	0.54	0.0	0.04	17.04	0.00	2.122	5.96	1.79	6.1	93.8	0.1	0.62	0.36	0.60	0.82	0.89	14442	1791	7	0	4	0	0	logfile
✔	8iA2	35292	2024-02-14	2023-02-07	3.21	2.39	2.33	3.3	0.005	0.76	0.0	0.04	13.19	0.00	2.166	7.08	0.49	7.1	92.9	0.0	-1.13	0.77	0.74	2.82	3.3	0.003	0.69	0.0	0.04	15.21	0.00	2.167	10.38	5.10	5.7	94.3	0.0	-0.43	0.45	0.76	0.73	1.56	8653	1203	6	0	0	0	0	logfile
✔	8i9T	35283	2024-02-18	2023-02-07	3.6	3.30	3.57	3.2	0.003	0.70	0.0	0.04	20.78	0.01	1.963	15.04	0.17	4.7	95.1	0.2	0.08	0.72	0.72	1.57	3.2	0.005	0.73	0.0	0.04	21.48	0.01	1.990	15.26	3.46	5.1	94.7	0.2	0.17	1.33	0.76	0.75	1.66	133790	10454	59	2388	4	0	0	logfile
✔	8CHB	16659	2024-02-14	2023-02-07	3.14	3.61	3.17	3.5	0.012	1.75	2.0	0.09	15.26	0.01	2.512	3.80	1.64	3.6	96.4	0.0	-1.52	0.72	0.77	2.69	3.5	0.003	0.63	0.0	0.04	16.48	0.00	2.211	7.43	2.25	3.0	97.0	0.0	2.28	2.23	0.74	0.80	1.73	8916	1158	2	0	0	0	0	logfile
✔	8i9R	35281	2024-02-15	2023-02-07	3.1	3.01	3.08	3.0	0.005	0.86	1.0	0.05	22.45	0.01	2.123	6.28	1.07	4.1	95.8	0.1	-2.59	0.70	0.74	2.37	3.0	0.005	0.62	0.0	0.04	22.09	0.01	1.933	9.92	3.33	3.9	96.0	0.1	0.50	1.20	0.79	0.82	2.35	117417	8820	52	2395	3	0	0	logfile
✔	8G38	29689	2024-02-23	2023-02-07	3.2	2.14	—	2.9	0.009	1.10	9.0	0.07	25.06	0.01	0.842	5.44	4.67	3.4	96.5	0.1	-1.04	0.72	0.71	1.68	2.1	0.007	0.67	0.0	0.04	23.88	0.01	2.042	13.21	5.27	6.2	93.8	0.1	-0.71	0.37	0.73	0.74	1.95	144290	5922	53	4559	1	1	0	logfile
✔	8i9Q	35280	2024-02-13	2023-02-07	4.22	4.44	4.10	4.3	0.007	0.98	1.0	0.05	14.66	0.01	1.697	22.61	0.86	11.5	88.5	0.0	-3.94	0.49	0.68	—	4.3	0.004	0.82	0.0	0.05	14.16	0.00	2.104	15.08	0.00	11.2	88.8	0.0	-1.36	1.35	0.47	0.61	—	5179	675	2	0	0	0	0	logfile
✔	8i9P	35279	2024-02-19	2023-02-07	3.0	2.95	2.96	2.9	0.005	0.91	0.0	0.05	22.03	0.01	2.185	5.31	1.13	3.9	96.0	0.1	-1.14	0.81	0.86	2.74	2.9	0.006	0.67	0.0	0.04	21.89	0.01	2.009	8.78	2.91	4.1	95.9	0.0	0.52	0.36	0.83	0.86	2.70	80799	5869	35	1563	2	0	0	logfile

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