Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i9L	35275	2024-02-14	2023-02-07	3.18	2.32	2.37	3.2	0.003	0.58	0.0	0.04	12.92	0.00	2.235	8.98	0.96	4.6	95.4	0.0	0.32	0.78	0.75	2.64	3.2	0.004	0.60	0.0	0.04	14.65	0.00	2.048	9.16	1.91	4.5	95.5	0.0	0.24	0.32	0.79	0.79	2.73	8617	1183	6	0	0	0	0	logfile
✔	8G38	29689	2024-02-23	2023-02-07	3.2	2.14	—	2.9	0.009	1.10	9.0	0.07	25.06	0.01	0.842	5.44	4.67	3.4	96.5	0.1	-1.04	0.72	0.71	1.68	2.1	0.007	0.67	0.0	0.04	23.88	0.01	2.042	13.21	5.27	6.2	93.8	0.1	-0.71	0.37	0.73	0.74	1.95	144290	5922	53	4559	1	1	0	logfile
✔	8G3A	29690	2024-02-16	2023-02-07	3.4	3.69	3.48	3.7	0.005	0.72	0.0	0.04	15.96	0.00	2.088	6.37	0.06	5.8	94.0	0.1	0.42	0.60	0.71	1.20	3.7	0.003	0.54	0.0	0.04	17.04	0.00	2.122	5.96	1.79	6.1	93.8	0.1	0.62	0.36	0.60	0.82	0.89	14442	1791	7	0	4	0	0	logfile
✔	8G2V	29682	2024-02-13	2023-02-06	2.715	2.36	2.41	3.0	0.005	0.64	0.0	0.06	16.26	0.00	2.486	8.31	0.00	5.3	94.7	0.0	-3.75	0.45	0.81	7.19	3.0	0.003	0.64	0.0	0.06	17.54	0.00	2.365	18.40	4.44	0.5	99.5	0.0	-3.20	0.67	0.44	0.83	7.69	1660	210	10	0	0	0	0	logfile
✔	8G2W	29683	2024-02-20	2023-02-06	3.7	4.07	3.84	3.9	0.004	0.63	0.0	0.04	17.34	0.00	2.039	14.25	0.11	2.4	97.6	0.0	1.34	0.79	0.80	1.13	3.9	0.004	0.65	0.0	0.04	19.22	0.00	1.919	17.13	2.81	3.4	96.6	0.0	0.69	1.24	0.80	0.81	0.96	26829	3172	9	97	1	0	0	logfile
✔	8G2Y	29684	2024-02-15	2023-02-06	3.44	3.81	3.54	3.8	0.004	0.76	0.0	0.04	15.56	0.00	2.204	4.67	0.00	4.5	95.5	0.0	-1.42	0.58	0.76	2.31	3.8	0.003	0.53	0.0	0.04	15.51	0.00	1.949	10.56	3.82	6.6	93.4	0.0	-1.20	0.31	0.57	0.79	2.44	13019	891	5	0	1	0	6342	logfile
✔	8i92	35255	2024-02-18	2023-02-06	3.2	3.51	3.07	3.4	0.013	0.93	0.0	0.06	16.45	0.01	1.843	9.78	5.36	7.9	91.9	0.2	-3.72	0.71	0.75	2.11	3.3	0.003	0.64	0.0	0.04	15.71	0.00	1.996	6.90	1.51	5.7	94.3	0.0	0.24	0.69	0.75	0.86	1.96	22344	2710	24	0	40	0	0	logfile
✔	8G34	29688	2024-02-23	2023-02-06	3.2	2.16	—	3.3	0.008	1.01	3.0	0.06	24.42	0.01	2.065	4.66	0.72	4.6	95.3	0.1	-1.60	0.52	0.41	0.11	2.0	0.007	0.81	2.0	0.04	23.73	0.01	1.691	12.64	4.34	7.1	92.9	0.1	-1.16	1.89	0.74	0.75	2.31	144256	5922	52	4559	0	0	0	logfile
✔	8i95	35257	2024-02-14	2023-02-06	2.88	3.13	2.89	3.2	0.004	0.61	0.0	0.04	14.09	0.00	2.195	7.07	1.15	5.2	94.8	0.0	0.10	0.63	0.79	3.85	3.2	0.002	0.55	0.0	0.04	14.91	0.00	2.149	7.07	2.04	4.4	95.6	0.0	0.34	0.26	0.62	0.79	3.41	8153	1121	6	0	1	0	0	logfile
✔	8i9H	35272	2024-02-13	2023-02-06	3.6	3.94	3.50	3.9	0.006	0.71	0.0	0.05	16.88	0.00	2.135	8.35	7.58	9.6	90.4	0.0	-4.33	0.67	0.82	2.13	4.0	0.002	0.69	0.0	0.04	16.66	0.00	2.168	6.54	3.06	5.6	94.4	0.0	-0.96	1.17	0.70	0.84	1.63	6514	780	9	0	13	0	0	logfile
✔	8i93	35256	2024-02-18	2023-02-06	3.1	3.37	3.07	3.3	0.014	0.97	0.0	0.06	16.71	0.01	1.913	12.79	3.93	10.6	89.4	0.1	-3.81	0.75	0.81	2.33	3.2	0.003	0.66	0.0	0.04	16.20	0.00	2.036	7.06	1.72	6.2	93.8	0.0	-0.10	0.63	0.74	0.86	2.05	22342	2710	24	0	40	0	0	logfile
✔	8i9E	35268	2024-02-13	2023-02-06	3.2	3.50	3.01	3.5	0.008	0.74	0.0	0.05	16.27	0.00	2.266	4.96	4.76	9.7	90.3	0.0	-3.37	0.59	0.83	2.70	3.5	0.002	0.59	0.0	0.04	16.40	0.00	2.203	3.28	2.53	5.7	94.3	0.0	-0.33	0.32	0.57	0.81	2.51	6421	764	9	0	13	0	0	logfile
✘	8CGV	16652	2024-02-20	2023-02-06	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	87899	2819	67	2743	307	6570	0	logfile
✔	8i9C	35266	2024-02-23	2023-02-06	3.85	4.73	4.01	3.8	0.011	0.94	0.0	0.07	17.29	0.01	1.871	14.56	9.03	8.1	90.3	1.5	-3.62	0.68	0.50	0.75	4.0	0.004	0.80	0.0	0.05	16.29	0.00	2.020	14.78	3.68	7.1	92.8	0.1	-0.93	1.90	0.83	0.76	0.62	39535	4786	50	0	104	0	0	logfile
✔	8G31	29687	2024-02-23	2023-02-06	3.2	2.13	—	3.3	0.006	0.95	1.0	0.05	24.19	0.01	2.203	5.22	0.76	6.2	93.8	0.1	-2.51	0.49	0.38	0.07	2.0	0.006	0.71	0.0	0.04	23.68	0.01	1.962	12.45	4.07	8.2	91.7	0.1	-1.67	1.32	0.74	0.74	1.87	144258	5922	52	4559	0	0	0	logfile
✔	8i91	35254	2024-02-18	2023-02-06	3.3	3.48	3.29	3.4	0.011	1.03	0.0	0.06	17.23	0.01	1.837	22.83	8.31	12.9	85.0	2.2	-4.52	0.49	0.52	1.37	3.4	0.003	0.70	0.0	0.04	16.84	0.00	1.980	8.37	1.90	6.3	93.5	0.1	-0.32	2.69	0.69	0.77	1.59	21764	2658	24	0	36	0	0	logfile
✔	8G2U	29681	2024-02-21	2023-02-06	3.0	2.24	—	3.2	0.004	0.85	0.0	0.04	23.51	0.01	2.144	4.34	0.00	5.2	94.8	0.1	-1.95	0.46	0.32	0.25	3.0	0.006	0.67	0.0	0.04	23.44	0.01	1.936	9.34	3.74	7.1	92.9	0.1	-0.81	2.69	0.86	0.88	2.82	140855	5496	51	4559	0	0	0	logfile
✔	8i9A	35263	2024-02-14	2023-02-06	3.57	3.85	3.66	3.9	0.004	0.76	0.0	0.05	14.15	0.01	1.959	6.87	1.19	3.5	96.5	0.0	-0.11	0.66	0.76	2.90	3.9	0.003	0.69	0.0	0.04	14.85	0.00	2.180	10.36	2.74	3.6	96.4	0.0	0.93	0.56	0.65	0.76	1.87	8409	1130	6	0	1	0	0	logfile
✔	8i97	35259	2024-02-13	2023-02-06	3.19	3.43	3.21	3.5	0.005	0.61	1.0	0.05	12.74	0.00	2.261	7.89	0.13	5.2	94.8	0.0	0.00	0.68	0.78	2.78	3.5	0.004	0.58	0.0	0.04	14.32	0.00	2.146	8.84	2.40	4.7	95.3	0.0	0.17	1.11	0.68	0.80	2.35	8130	1113	5	0	0	0	0	logfile
✔	8i9D	35267	2024-02-23	2023-02-06	3.95	4.85	4.12	4.1	0.008	0.87	0.0	0.06	17.44	0.01	1.871	16.55	9.03	7.6	90.8	1.6	-3.78	0.68	0.49	0.64	4.2	0.006	0.86	0.0	0.05	16.49	0.00	2.031	17.66	2.99	8.1	91.8	0.1	-1.24	1.87	0.83	0.76	0.83	39517	4786	50	0	104	0	0	logfile

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