Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i9F	35269	2024-02-13	2023-02-06	2.9	3.26	2.71	3.2	0.004	0.62	0.0	0.05	16.78	0.00	2.204	4.56	5.51	4.8	95.1	0.1	-2.86	0.73	0.87	2.23	3.2	0.003	0.67	0.0	0.04	16.70	0.00	2.117	5.20	3.13	4.5	95.5	0.0	0.21	0.40	0.71	0.86	1.92	6415	764	9	0	13	0	0	logfile
✔	8G2U	29681	2024-02-21	2023-02-06	3.0	2.24	—	3.2	0.004	0.85	0.0	0.04	23.51	0.01	2.144	4.34	0.00	5.2	94.8	0.1	-1.95	0.46	0.32	0.25	3.0	0.006	0.67	0.0	0.04	23.44	0.01	1.936	9.34	3.74	7.1	92.9	0.1	-0.81	2.69	0.86	0.88	2.82	140855	5496	51	4559	0	0	0	logfile
✔	8i9A	35263	2024-02-14	2023-02-06	3.57	3.85	3.66	3.9	0.004	0.76	0.0	0.05	14.15	0.01	1.959	6.87	1.19	3.5	96.5	0.0	-0.11	0.66	0.76	2.90	3.9	0.003	0.69	0.0	0.04	14.85	0.00	2.180	10.36	2.74	3.6	96.4	0.0	0.93	0.56	0.65	0.76	1.87	8409	1130	6	0	1	0	0	logfile
✔	8i97	35259	2024-02-13	2023-02-06	3.19	3.43	3.21	3.5	0.005	0.61	1.0	0.05	12.74	0.00	2.261	7.89	0.13	5.2	94.8	0.0	0.00	0.68	0.78	2.78	3.5	0.004	0.58	0.0	0.04	14.32	0.00	2.146	8.84	2.40	4.7	95.3	0.0	0.17	1.11	0.68	0.80	2.35	8130	1113	5	0	0	0	0	logfile
✘	8CGV	16652	2024-02-20	2023-02-06	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	87899	2819	67	2743	307	6570	0	logfile
✔	8CGL	16647	2024-02-20	2023-02-05	4.1	6.82	4.33	4.1	0.008	1.07	4.0	0.07	5.62	0.01	2.267	9.85	4.00	7.0	92.8	0.2	-0.82	0.83	0.66	—	4.2	0.004	0.69	0.0	0.05	4.51	0.00	2.176	8.72	0.00	8.4	91.6	0.0	-0.02	1.39	0.90	0.82	—	16732	2212	4	0	0	0	5572	logfile
✔	8i8E	35249	2024-02-20	2023-02-04	2.63	2.81	2.70	2.8	0.007	0.73	0.0	0.05	17.47	0.01	2.212	10.18	0.76	8.2	91.6	0.2	-0.93	0.69	0.73	3.12	2.8	0.006	0.67	0.0	0.05	17.79	0.00	2.222	7.99	2.45	6.7	92.9	0.3	-0.90	1.08	0.76	0.86	3.40	29058	3612	24	0	18	0	0	logfile
✔	8G2J	29679	2024-02-22	2023-02-04	3.3	3.77	3.27	3.7	0.007	0.72	6.0	0.07	13.57	0.00	2.018	8.71	0.59	4.7	95.1	0.2	1.19	0.59	0.75	1.81	3.7	0.004	0.65	5.0	0.07	14.95	0.01	1.935	10.96	1.56	6.0	93.9	0.1	0.81	1.51	0.62	0.82	2.14	34401	2157	9	0	21	0	16852	logfile
✔	8CGG	16642	2024-02-13	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.004	0.82	0.0	0.04	17.24	0.00	2.623	0.78	0.40	4.9	95.1	0.0	-4.88	0.93	0.51	0.92	7.91	2710	400	5	0	0	0	0	logfile
✔	8CGH	16643	2024-02-13	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.005	0.95	0.0	0.05	17.40	0.00	2.626	0.78	0.40	5.6	94.4	0.0	-4.95	0.93	0.53	0.93	6.48	2710	400	5	0	0	0	0	logfile
✔	8CG3	16628	2024-02-13	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.004	0.83	0.0	0.04	16.02	0.00	2.642	0.52	0.00	1.8	98.2	0.0	-4.79	0.31	0.51	0.94	7.31	3040	445	5	0	0	0	0	logfile
✔	8i8D	35248	2024-02-21	2023-02-03	2.51	2.68	2.55	2.6	0.007	0.88	0.0	0.06	16.42	0.00	2.088	9.25	0.76	5.1	94.9	0.0	-1.00	0.74	0.76	4.05	2.6	0.004	0.65	0.0	0.05	17.23	0.00	2.134	6.63	2.28	5.5	94.5	0.0	-0.67	0.46	0.80	0.87	4.12	29130	3624	24	0	18	0	0	logfile
✔	8G27	29678	2024-02-22	2023-02-03	3.3	3.75	3.55	3.7	0.003	0.59	7.0	0.07	16.76	0.00	1.501	5.09	0.05	5.2	94.6	0.2	0.80	0.68	0.83	1.69	3.7	0.004	0.61	6.0	0.07	15.13	0.00	1.111	4.83	0.70	6.2	93.5	0.2	0.68	1.01	0.69	0.86	1.93	34373	2157	9	3	21	2	16852	logfile
✔	8G1U	29677	2024-02-20	2023-02-03	2.83	3.09	2.91	3.1	0.009	0.93	5.0	0.06	14.70	0.01	2.214	6.28	0.59	2.8	97.0	0.1	-1.25	0.68	0.87	4.53	3.1	0.005	0.58	0.0	0.05	16.81	0.00	2.118	8.38	1.88	2.7	97.2	0.1	-0.19	0.31	0.67	0.88	4.09	29048	3651	20	0	4	0	0	logfile
✔	8i87	35240	2024-02-21	2023-02-03	3.1	3.24	3.12	3.2	0.003	0.53	3.0	0.04	19.60	0.00	2.023	8.76	4.16	4.0	95.7	0.3	-0.18	0.75	0.83	2.73	3.2	0.003	0.50	0.0	0.04	19.38	0.00	2.002	8.04	3.49	4.3	95.4	0.3	0.19	0.22	0.79	0.86	2.79	31066	3519	20	143	4	0	0	logfile
✔	8i88	35241	2024-02-13	2023-02-03	3.7	3.96	3.63	3.9	0.003	0.66	0.0	0.04	16.50	0.01	2.077	9.42	0.38	4.0	95.9	0.1	0.14	0.74	0.79	1.45	3.9	0.006	0.72	0.0	0.05	17.37	0.01	2.108	11.69	5.69	6.3	93.6	0.1	-0.47	0.92	0.74	0.81	1.46	7287	883	3	2	0	0	0	logfile
✔	8CEN	16610	2024-02-22	2023-02-02	3.0	2.82	2.90	2.6	0.004	0.80	1.0	0.05	14.49	0.01	2.160	5.96	0.05	2.9	97.1	0.0	-0.65	0.64	0.53	1.80	2.6	0.006	0.71	0.0	0.04	16.39	0.00	2.038	13.13	1.33	3.1	96.9	0.0	0.61	1.30	0.67	0.59	2.11	101943	12311	58	146	19	0	0	logfile
✔	8CEo	16611	2024-02-14	2023-02-02	3.6	3.26	3.48	2.9	0.004	0.75	1.0	0.05	16.42	0.01	2.091	6.70	0.00	2.9	97.1	0.0	-0.68	0.73	0.56	1.54	2.9	0.005	0.65	0.0	0.04	17.82	0.00	1.893	14.64	1.52	3.2	96.8	0.0	0.59	0.66	0.68	0.52	1.44	113584	13074	66	418	19	0	0	logfile
✔	8G1i	29671	2024-02-15	2023-02-02	3.12	2.20	3.26	2.0	0.003	0.64	0.0	0.04	21.47	0.01	1.975	7.71	1.72	6.5	93.5	0.0	-1.85	0.75	0.77	2.21	1.8	0.002	0.53	0.0	0.04	21.20	0.00	2.197	5.63	2.84	4.9	95.1	0.0	-0.59	0.86	0.75	0.79	2.16	13613	1298	4	142	0	0	0	logfile
✘	8G1E	29668	2024-02-22	2023-02-02	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32649	4148	12	0	18	90	0	logfile

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