Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i7W	35235	2024-02-14	2023-02-02	3.39	3.59	3.41	3.7	0.004	0.61	0.0	0.04	18.05	0.00	2.159	11.93	0.55	3.5	96.4	0.1	-0.49	0.66	0.80	1.92	3.7	0.005	0.70	0.0	0.04	18.35	0.00	2.121	13.60	5.14	4.2	95.8	0.0	-0.45	1.36	0.64	0.79	1.94	8461	1080	6	0	1	0	0	logfile
✔	8CEZ	16614	2024-02-16	2023-02-02	2.97	2.71	3.32	2.7	0.004	0.67	0.0	0.04	13.96	0.00	2.014	8.43	0.00	9.0	90.7	0.3	-1.75	0.53	0.70	2.84	2.7	0.004	0.63	0.0	0.04	16.41	0.01	2.008	7.85	1.40	11.2	88.7	0.1	-1.70	0.38	0.53	0.75	2.17	68244	4404	12	0	0	0	33900	logfile
✔	8CEU	16613	2024-02-21	2023-02-02	1.83	1.74	1.82	1.7	0.009	1.57	16.0	0.11	22.50	0.03	1.830	0.53	0.65	2.7	97.2	0.0	-1.11	0.79	0.85	6.99	1.7	0.006	0.96	16.0	0.05	22.88	0.01	1.772	4.40	0.73	1.9	98.1	0.0	-0.27	0.20	0.84	0.89	6.89	92838	3076	79	2872	304	6830	0	logfile
✘	8G1S	29676	2024-02-20	2023-02-02	3.7	4.04	3.83	3.9	0.003	0.58	0.0	0.04	16.07	0.00	2.004	17.34	1.07	8.3	91.6	0.1	-1.91	0.80	0.81	1.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26788	3172	9	95	1	0	0	logfile
✘	8G1F	29669	2024-02-22	2023-02-02	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32911	4148	12	0	22	253	0	logfile
✔	8CDV	16596	2024-02-24	2023-02-01	4.73	3.73	4.59	3.7	0.009	1.44	2.0	0.11	24.69	0.02	1.187	13.24	3.68	3.0	96.0	0.9	-1.91	0.67	0.66	—	3.6	0.002	0.61	0.0	0.04	23.46	0.00	2.081	16.47	0.11	2.4	97.4	0.2	0.34	1.23	0.66	0.61	—	43593	2094	19	1258	0	0	0	logfile
✔	8CDU	16595	2024-02-25	2023-02-01	3.1	2.62	3.02	2.8	0.010	1.55	3.0	0.10	23.32	0.02	2.229	4.96	4.95	6.0	93.2	0.9	-3.44	0.72	0.77	2.32	2.8	0.006	0.81	0.0	0.05	23.45	0.01	2.056	14.00	4.51	5.2	94.7	0.1	-0.75	1.28	0.68	0.71	1.85	51964	2928	22	1340	0	0	0	logfile
✔	8G0Z	29658	2024-02-18	2023-02-01	3.61	3.76	3.60	3.8	0.005	0.74	0.0	0.05	12.13	0.00	1.829	12.10	2.19	5.7	94.3	0.0	0.25	0.52	0.59	1.01	3.8	0.003	0.64	0.0	0.04	16.19	0.00	1.971	12.91	1.65	5.6	94.4	0.0	-0.13	0.93	0.64	0.72	1.20	20944	2592	12	12	10	0	0	logfile
✔	8i7N	35223	2024-02-14	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.008	0.74	0.0	0.04	23.13	0.01	1.929	5.26	0.00	0.0	0.0	0.0	—	0.95	0.87	0.91	—	8979	0	1	418	29	0	0	logfile
✔	8CED	16606	2024-02-25	2023-02-01	4.15	3.12	4.20	3.1	0.009	1.59	17.0	0.11	23.64	0.02	1.605	10.40	3.91	6.4	92.9	0.7	-3.32	0.50	0.64	—	3.1	0.002	0.62	0.0	0.04	22.60	0.00	2.070	14.87	0.04	2.8	97.0	0.2	0.18	0.83	0.49	0.58	—	51964	2928	22	1340	0	0	0	logfile
✔	8CE8	16601	2024-02-15	2023-02-01	3.81	4.13	3.80	4.1	0.006	1.20	1.0	0.06	15.73	0.01	2.267	6.99	0.61	2.9	97.0	0.1	-0.56	0.65	0.76	1.19	4.2	0.003	0.70	0.0	0.04	16.61	0.01	2.090	11.89	2.59	2.5	97.4	0.1	1.85	0.64	0.68	0.81	1.23	12674	1620	9	0	0	0	0	logfile
✔	8G13	29660	2024-02-14	2023-02-01	2.3	3.09	2.30	2.7	0.004	0.60	0.0	0.05	14.97	0.00	2.083	5.94	0.86	3.9	96.1	0.0	0.94	0.88	0.92	3.62	2.7	0.003	0.48	0.0	0.04	15.53	0.00	2.130	7.66	0.76	4.1	95.9	0.0	0.85	0.25	0.88	0.93	4.70	10008	1336	4	0	0	0	12	logfile
✔	8G14	29661	2024-02-14	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.004	0.52	0.0	0.05	15.68	0.00	2.325	1.91	0.85	3.0	97.0	0.0	0.74	0.18	0.89	0.94	5.60	10020	1336	4	0	0	0	0	logfile
✔	8G17	29664	2024-02-14	2023-02-01	1.98	1.88	1.96	2.0	0.004	0.64	0.0	0.05	15.70	0.00	2.172	5.82	0.76	3.3	96.7	0.0	0.61	0.51	0.71	6.43	2.0	0.003	0.68	0.0	0.05	16.03	0.01	2.250	1.96	2.08	3.2	96.8	0.0	0.42	1.22	0.72	0.87	6.85	10016	1336	4	0	0	0	0	logfile
✘	8CE7	16600	2024-02-14	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.71	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✔	8CEA	16602	2024-02-14	2023-02-01	3.94	4.21	3.99	4.2	0.005	1.11	0.0	0.05	14.35	0.01	2.254	6.13	0.00	4.6	95.4	0.0	-1.36	0.65	0.78	0.81	4.2	0.004	0.80	0.0	0.04	16.84	0.00	2.139	12.31	3.32	4.3	95.7	0.0	0.76	1.02	0.64	0.84	0.88	8970	1153	6	0	0	0	0	logfile
✔	8CE5	16599	2024-02-14	2023-02-01	3.62	3.94	3.59	4.0	0.008	1.42	0.0	0.05	18.25	0.01	2.072	9.37	0.32	4.1	95.5	0.4	-1.59	0.59	0.73	0.72	4.0	0.004	0.70	0.0	0.04	18.25	0.01	1.955	12.33	3.34	4.0	95.9	0.1	0.31	0.98	0.64	0.78	0.80	8979	1146	8	0	4	0	0	logfile
✔	8CEC	16605	2024-02-25	2023-02-01	3.57	2.84	3.39	2.8	0.010	1.58	12.0	0.11	23.40	0.02	2.182	8.39	4.35	6.1	93.2	0.7	-3.58	0.74	0.71	2.10	2.7	0.003	0.67	0.0	0.04	23.59	0.00	2.115	14.56	3.87	4.6	95.2	0.2	-0.25	1.15	0.70	0.67	1.75	51964	2928	22	1340	0	0	0	logfile
✔	8CE1	16597	2024-02-15	2023-02-01	3.47	3.70	3.42	3.7	0.006	1.08	0.0	0.06	15.03	0.01	2.189	6.45	0.42	2.7	97.2	0.1	-0.68	0.66	0.82	2.33	3.7	0.003	0.66	0.0	0.04	16.10	0.01	2.240	8.04	2.20	2.5	97.5	0.0	1.54	0.97	0.72	0.87	1.80	11438	1462	8	0	0	0	0	logfile
✔	8CEE	16607	2024-02-25	2023-02-01	3.7	2.86	3.60	3.0	0.009	1.55	15.0	0.11	23.57	0.02	1.876	8.95	3.87	5.9	93.2	0.9	-3.17	0.47	0.65	1.30	2.9	0.005	0.82	0.0	0.04	23.50	0.01	1.990	18.67	3.15	5.8	94.0	0.2	-0.85	1.13	0.49	0.59	1.20	51964	2928	22	1340	0	0	0	logfile

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