Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CEE	16607	2024-02-25	2023-02-01	3.7	2.86	3.60	3.0	0.009	1.55	15.0	0.11	23.57	0.02	1.876	8.95	3.87	5.9	93.2	0.9	-3.17	0.47	0.65	1.30	2.9	0.005	0.82	0.0	0.04	23.50	0.01	1.990	18.67	3.15	5.8	94.0	0.2	-0.85	1.13	0.49	0.59	1.20	51964	2928	22	1340	0	0	0	logfile
✔	8CE4	16598	2024-02-15	2023-02-01	2.7	3.26	2.57	3.0	0.004	0.63	0.0	0.04	18.89	0.01	2.159	10.18	2.61	4.6	95.4	0.1	-0.84	0.89	0.90	4.88	3.0	0.003	0.63	0.0	0.04	17.83	0.00	2.192	11.17	2.25	5.2	94.8	0.0	-0.91	0.86	0.85	0.92	4.86	13435	1645	20	0	20	0	0	logfile
✔	8i7N	35223	2024-02-14	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.008	0.74	0.0	0.04	23.13	0.01	1.929	5.26	0.00	0.0	0.0	0.0	—	0.95	0.87	0.91	—	8979	0	1	418	29	0	0	logfile
✔	8G0Z	29658	2024-02-18	2023-02-01	3.61	3.76	3.60	3.8	0.005	0.74	0.0	0.05	12.13	0.00	1.829	12.10	2.19	5.7	94.3	0.0	0.25	0.52	0.59	1.01	3.8	0.003	0.64	0.0	0.04	16.19	0.00	1.971	12.91	1.65	5.6	94.4	0.0	-0.13	0.93	0.64	0.72	1.20	20944	2592	12	12	10	0	0	logfile
✔	8i7J	35216	2024-02-18	2023-01-31	4.6	4.67	4.57	4.1	0.006	0.99	0.0	0.05	25.02	0.01	1.679	40.27	0.05	19.3	80.4	0.3	-3.88	0.78	0.71	—	4.1	0.003	0.71	0.0	0.04	23.92	0.00	1.768	22.33	0.02	13.1	86.7	0.2	-2.23	1.72	0.81	0.73	—	76299	4874	39	1780	5	0	0	logfile
✔	8G0E	29655	2024-02-23	2023-01-31	2.6	3.64	2.70	3.1	0.008	0.94	6.0	0.05	14.17	0.01	1.784	7.22	1.18	2.4	97.5	0.1	0.70	0.80	0.76	4.09	3.1	0.003	0.65	0.0	0.04	14.81	0.00	1.865	10.01	0.89	2.0	98.0	0.0	1.62	0.59	0.85	0.87	3.24	35959	4858	32	0	16	0	0	logfile
✔	8G09	29650	2024-02-17	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.71	0.0	0.23	7.95	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	3.4	0.008	0.98	0.0	0.06	7.89	0.01	1.657	7.92	0.00	12.9	87.1	0.0	-1.17	0.74	0.82	0.82	—	19599	4860	26	0	10	0	0	logfile
✔	8G0C	29653	2024-02-17	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.85	0.0	0.17	9.04	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.007	0.84	0.0	0.07	7.79	0.00	1.759	2.62	0.00	9.5	90.4	0.0	0.38	1.21	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	8G0A	29651	2024-02-22	2023-01-31	2.9	3.69	2.92	3.4	0.007	0.78	3.0	0.05	14.01	0.01	1.816	7.95	1.12	2.3	97.6	0.0	0.37	0.81	0.78	3.60	3.4	0.005	0.84	0.0	0.05	15.48	0.00	1.866	16.62	2.10	2.6	97.4	0.0	1.16	0.80	0.81	0.84	2.64	35630	4861	26	0	10	0	0	logfile
✔	8G08	29649	2024-02-17	2023-01-31	2.8	3.66	2.85	3.1	0.005	0.68	0.0	0.23	7.76	0.00	1.824	0.59	0.00	2.4	97.6	0.0	1.01	0.74	0.70	—	3.3	0.004	0.68	0.0	0.02	6.39	0.00	1.808	1.98	0.00	7.2	92.8	0.0	1.27	1.85	0.81	0.79	—	19595	4859	26	0	10	0	0	logfile
✔	8G0D	29654	2024-02-17	2023-01-31	2.9	3.84	3.02	2.9	0.005	0.87	0.0	0.18	8.94	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	2.9	0.007	0.92	0.0	0.08	8.49	0.00	1.745	4.31	0.00	10.4	89.5	0.1	-0.14	1.63	0.80	0.81	—	19874	4860	30	0	16	0	0	logfile
✔	8CDK	16576	2024-02-17	2023-01-31	3.32	2.38	3.25	2.0	0.003	0.57	0.0	0.04	11.83	0.00	2.006	4.82	0.00	1.8	98.2	0.0	1.31	0.80	0.81	2.60	2.0	0.002	0.53	0.0	0.04	14.90	0.00	2.117	4.76	1.48	1.6	98.4	0.0	2.14	0.38	0.82	0.83	2.12	16905	2392	6	0	3	0	0	logfile
✘	8i79	35212	2024-02-19	2023-01-31	2.8	3.87	3.00	3.3	0.003	0.57	0.0	0.04	12.36	0.00	2.195	8.33	0.00	3.0	97.0	0.0	1.30	0.88	0.84	3.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16293	2198	10	0	0	0	0	logfile
✔	8G04	29644	2024-02-13	2023-01-31	3.4	3.70	3.42	3.6	0.005	0.66	0.0	0.04	11.25	0.01	2.229	6.36	2.28	3.2	96.8	0.0	0.42	0.82	0.82	2.73	3.6	0.003	0.64	0.0	0.04	13.11	0.00	2.203	6.86	3.22	4.3	95.7	0.0	0.62	0.39	0.82	0.82	2.12	7314	944	5	0	12	0	0	logfile
✔	8G02	29642	2024-02-17	2023-01-31	3.5	2.40	3.57	3.0	0.003	0.61	0.0	0.04	15.73	0.01	2.035	10.28	0.10	1.9	98.1	0.0	0.87	0.68	0.69	1.89	2.1	0.003	0.58	0.0	0.04	16.37	0.00	2.091	11.87	2.82	3.5	96.5	0.0	0.66	0.61	0.68	0.71	2.00	18194	1148	6	0	0	0	9228	logfile
✔	8G01	29641	2024-02-17	2023-01-31	3.4	2.36	3.52	2.8	0.002	0.44	0.0	0.04	11.41	0.00	2.029	3.31	0.00	1.0	99.0	0.0	2.02	0.68	0.71	1.84	2.6	0.004	0.59	0.0	0.04	15.49	0.00	1.992	10.69	2.62	3.0	97.0	0.0	0.84	0.82	0.71	0.77	2.01	18152	1148	6	0	0	0	9214	logfile
✔	8CDJ	16575	2024-02-15	2023-01-31	3.4	2.42	3.23	2.1	0.003	0.57	0.0	0.04	13.02	0.00	2.173	4.91	0.00	1.5	98.5	0.0	1.53	0.80	0.79	2.48	2.1	0.003	0.56	0.0	0.04	15.51	0.00	2.226	5.57	2.61	2.1	97.9	0.0	1.95	0.39	0.81	0.82	2.11	13623	2001	5	0	0	0	0	logfile
✔	8G00	29640	2024-02-20	2023-01-31	3.4	3.72	3.50	3.7	0.004	0.67	0.0	0.05	17.68	0.00	2.029	12.24	1.41	4.2	95.7	0.1	0.02	0.75	0.80	1.88	3.7	0.005	0.66	0.0	0.04	18.82	0.00	1.919	15.90	2.45	5.2	94.8	0.0	0.02	1.13	0.73	0.81	1.38	26819	3172	9	97	1	0	0	logfile
✔	8G05	29645	2024-02-14	2023-01-31	3.0	3.16	2.98	3.1	0.007	0.90	0.0	0.14	14.33	0.01	2.257	4.54	0.62	3.6	96.4	0.0	-3.23	0.64	0.77	3.11	3.1	0.003	0.63	0.0	0.04	16.27	0.00	2.158	9.76	3.20	2.7	97.3	0.0	-0.57	0.54	0.64	0.78	2.91	8944	1140	6	0	2	0	0	logfile
✔	8CDP	16592	2024-02-13	2023-01-31	3.4	4.25	3.44	3.9	0.003	0.78	1.0	0.05	12.96	0.00	2.247	11.14	0.36	2.3	97.7	0.0	0.12	0.89	0.83	2.17	3.9	0.003	0.66	0.0	0.04	14.75	0.00	2.179	10.56	1.60	2.9	97.1	0.0	-0.12	0.42	0.90	0.84	1.86	5200	654	2	0	0	0	0	logfile

• ← previous
• Page 82 of 633
• next →