Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CA1	16515	2024-02-14	2023-01-24	3.9	3.75	4.03	4.0	0.006	0.89	0.0	0.05	14.98	0.01	2.041	10.58	0.00	5.5	94.4	0.2	-1.92	0.78	0.81	2.21	4.0	0.003	0.65	0.0	0.04	15.63	0.00	2.157	11.41	1.59	2.5	97.5	0.0	2.30	2.01	0.78	0.81	1.98	9036	1178	4	0	2	0	0	logfile
✔	8i54	35191	2024-02-18	2023-01-24	3.95	4.70	4.01	4.1	0.013	1.03	0.0	0.05	19.00	0.01	2.207	13.04	0.98	12.8	86.8	0.4	-3.16	0.85	0.69	0.32	4.1	0.003	0.61	0.0	0.04	19.64	0.00	1.923	25.69	1.18	14.0	85.9	0.2	-3.21	0.56	0.86	0.72	0.77	19661	1113	4	67	0	0	9100	logfile
✔	8CAD	16524	2024-02-15	2023-01-24	2.85	2.57	2.81	2.7	0.003	0.59	0.0	0.05	11.54	0.00	2.115	5.66	0.00	1.8	98.2	0.0	0.82	0.69	0.81	3.81	2.6	0.005	0.62	0.0	0.04	14.33	0.00	1.858	5.16	2.21	4.4	95.6	0.0	0.28	0.62	0.70	0.85	4.11	64084	3816	30	0	78	766	31062	logfile
✔	8CAX	16535	2024-02-13	2023-01-24	3.7	3.92	3.26	4.2	0.009	1.65	6.0	0.09	14.83	0.01	2.271	8.26	4.55	9.6	90.4	0.0	-3.97	0.46	0.83	4.11	4.2	0.004	0.96	0.0	0.05	16.24	0.00	2.143	13.38	3.79	9.6	90.4	0.0	-2.70	3.37	0.39	0.75	4.32	3444	450	6	0	0	0	0	logfile
✔	8FXi	29534	2024-02-21	2023-01-24	2.7	2.87	2.84	2.9	0.014	2.10	93.0	0.12	13.25	0.02	1.801	6.73	3.12	7.1	92.1	0.8	-1.18	0.53	0.65	2.55	2.8	0.002	0.59	0.0	0.05	15.20	0.00	2.146	3.57	2.03	5.9	93.8	0.2	-0.74	0.87	0.74	0.82	2.48	29641	3684	10	0	6	0	0	logfile
✔	8FXH	29533	2024-02-21	2023-01-24	2.8	2.94	2.88	4.0	0.006	1.37	50.0	0.10	17.25	0.01	2.235	6.73	1.19	7.8	91.8	0.4	-1.03	0.32	0.19	0.18	2.9	0.003	0.73	0.0	0.05	18.05	0.01	2.050	6.85	2.04	8.1	91.6	0.3	-1.14	1.88	0.76	0.85	1.88	30228	3786	6	0	0	0	0	logfile
✔	8CAQ	16532	2024-02-13	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	2.8	0.003	0.61	0.0	0.05	14.19	0.00	2.297	3.25	0.91	1.9	98.1	0.0	-1.83	0.60	0.46	0.93	6.60	2870	375	5	0	0	0	0	logfile
✔	8CA9	16521	2024-02-17	2023-01-24	2.29	2.19	2.27	2.2	0.003	0.56	0.0	0.04	14.41	0.00	2.021	2.73	0.00	1.2	98.8	0.0	0.94	0.71	0.84	5.01	2.2	0.004	0.60	0.0	0.04	14.83	0.00	1.892	2.86	0.70	2.4	97.6	0.0	1.22	2.47	0.73	0.87	5.25	70679	4074	27	0	69	2107	33094	logfile
✘	8CAN	16531	2024-02-17	2023-01-24	1.93	1.75	1.93	1.9	0.002	0.40	0.0	0.04	9.00	0.00	2.041	2.66	0.16	0.9	99.1	0.0	1.63	0.70	0.81	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71225	4104	21	0	27	3170	33930	logfile
✔	8CAU	16534	2024-02-15	2023-01-24	3.4	4.09	3.51	3.8	0.003	0.52	0.0	0.04	16.19	0.00	2.033	21.48	0.14	8.4	91.6	0.0	-3.17	0.90	0.89	4.04	3.8	0.004	0.73	0.0	0.05	15.59	0.00	2.236	8.64	1.76	7.6	92.4	0.0	-1.80	1.01	0.88	0.92	3.67	13545	1635	20	0	25	0	0	logfile
✔	8CAM	16530	2024-02-20	2023-01-24	1.86	1.57	1.83	1.7	0.010	1.53	0.0	0.11	22.63	0.03	1.821	0.54	0.27	3.0	96.8	0.1	-1.28	0.64	0.76	6.57	1.6	0.004	0.86	0.0	0.04	22.97	0.01	1.765	6.91	1.56	2.2	97.7	0.0	0.00	0.29	0.73	0.82	6.34	86648	2767	65	2724	322	6113	0	logfile
✔	8FWQ	29515	2024-02-20	2023-01-23	3.96	4.37	4.09	4.1	0.009	1.21	0.0	0.10	18.59	0.01	2.216	4.86	0.28	7.9	91.5	0.7	-4.98	0.72	0.76	1.01	4.1	0.003	0.79	0.0	0.05	14.01	0.00	2.080	12.75	2.32	7.0	92.8	0.2	-0.78	0.87	0.73	0.77	1.03	26805	3272	26	0	67	0	0	logfile
✔	8FWM	29512	2024-02-20	2023-01-23	3.49	3.85	3.68	3.9	0.005	0.88	0.0	0.05	14.58	0.01	2.205	13.47	2.37	13.8	85.1	1.2	-4.62	0.37	0.79	1.94	3.9	0.003	0.75	0.0	0.05	16.47	0.00	2.113	11.29	4.40	10.2	89.6	0.2	-1.82	0.83	0.39	0.83	1.73	26669	3483	15	0	0	0	0	logfile
✔	8FWW	29521	2024-02-16	2023-01-23	3.1	3.34	3.12	3.4	0.013	1.64	0.0	0.12	20.28	0.01	2.206	6.04	1.17	9.7	90.3	0.0	-5.95	0.59	0.76	2.91	3.4	0.003	0.65	0.0	0.04	17.05	0.00	2.236	9.18	2.42	7.3	92.7	0.0	-0.69	0.97	0.64	0.83	1.97	14471	1680	14	0	49	0	0	logfile
✔	8FWR	29516	2024-02-15	2023-01-23	3.1	3.33	3.13	3.5	0.008	1.10	0.0	0.07	19.32	0.01	2.334	2.19	0.00	7.7	91.7	0.5	-5.62	0.63	0.73	3.45	3.4	0.003	0.65	0.0	0.04	13.96	0.00	2.282	6.70	1.19	5.1	94.8	0.1	-0.48	1.21	0.64	0.77	2.72	12628	1532	16	0	32	0	0	logfile
✔	8FWS	29517	2024-02-16	2023-01-23	3.23	3.47	3.26	3.5	0.012	1.62	0.0	0.12	19.90	0.01	2.250	4.96	0.55	8.5	91.1	0.4	-5.96	0.65	0.74	3.06	3.5	0.003	0.71	0.0	0.04	18.22	0.00	2.111	10.37	2.07	6.6	93.1	0.4	-1.38	1.15	0.72	0.82	2.61	14416	1680	14	0	46	0	0	logfile
✔	8FWV	29520	2024-02-15	2023-01-23	3.03	3.27	3.07	3.3	0.007	1.07	0.0	0.10	14.82	0.01	2.334	3.96	1.19	7.3	92.4	0.3	-5.20	0.68	0.81	4.53	3.3	0.004	0.67	0.0	0.05	14.13	0.00	2.194	6.40	3.66	6.2	93.8	0.0	-1.16	0.62	0.71	0.86	3.57	12584	1532	16	0	28	0	0	logfile
✔	8FX4	29523	2024-02-15	2023-01-23	3.9	2.80	4.14	2.5	0.004	0.91	0.0	0.05	18.48	0.00	2.117	13.89	0.80	7.7	91.9	0.4	-1.50	0.73	0.72	1.18	2.4	0.003	0.81	0.0	0.05	18.80	0.00	2.122	13.03	4.55	8.5	91.4	0.1	-1.21	0.42	0.73	0.73	1.07	13474	1645	6	0	2	0	0	logfile
✔	8FX5	29524	2024-02-14	2023-01-23	2.45	3.11	2.28	2.8	0.008	1.02	0.0	0.05	12.35	0.01	2.299	2.42	0.11	2.0	98.0	0.0	-0.73	0.76	0.90	4.91	2.8	0.003	0.60	0.0	0.04	14.49	0.00	2.237	5.47	0.74	1.4	98.6	0.0	1.38	0.99	0.75	0.91	4.33	8818	1127	9	0	2	47	0	logfile
✔	8FWT	29518	2024-02-15	2023-01-23	3.09	3.38	3.14	3.4	0.007	1.04	0.0	0.07	16.22	0.01	2.333	2.08	0.82	8.0	92.0	0.0	-5.70	0.65	0.78	3.60	3.4	0.003	0.66	0.0	0.04	14.11	0.00	2.205	7.86	2.39	5.8	94.2	0.0	-0.89	1.36	0.72	0.85	3.31	12606	1532	16	0	30	0	0	logfile

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