Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FWT	29518	2024-02-15	2023-01-23	3.09	3.38	3.14	3.4	0.007	1.04	0.0	0.07	16.22	0.01	2.333	2.08	0.82	8.0	92.0	0.0	-5.70	0.65	0.78	3.60	3.4	0.003	0.66	0.0	0.04	14.11	0.00	2.205	7.86	2.39	5.8	94.2	0.0	-0.89	1.36	0.72	0.85	3.31	12606	1532	16	0	30	0	0	logfile
✘	8FWK	29511	2024-02-14	2023-01-22	3.5	4.25	3.71	4.0	0.005	1.07	2.0	0.06	12.40	0.01	2.289	13.87	1.29	11.6	87.2	1.2	-4.60	0.66	0.72	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9462	1194	2	0	0	0	0	logfile
✔	8C9H	16510	2024-02-16	2023-01-22	3.2	3.51	3.35	3.6	0.004	0.90	0.0	0.04	12.79	0.00	2.324	4.83	0.44	3.9	96.1	0.0	2.63	0.70	0.88	2.95	3.6	0.002	0.56	0.0	0.04	14.52	0.01	2.169	4.96	1.76	4.7	95.3	0.0	1.07	0.33	0.69	0.89	2.56	15776	2024	16	0	8	0	0	logfile
✔	8FWJ	29506	2024-02-21	2023-01-22	2.7	2.88	—	3.0	0.003	0.72	0.0	0.04	15.23	0.01	1.976	31.45	3.45	2.7	97.3	0.0	0.43	0.59	0.69	1.40	2.9	0.004	0.59	0.0	0.04	17.34	0.00	1.688	21.79	3.76	4.2	95.8	0.0	-0.57	1.33	0.73	0.85	2.74	60204	7644	48	0	48	48	24	logfile
✔	8FWi	29505	2024-02-20	2023-01-22	2.9	3.12	—	3.1	0.012	1.40	0.0	0.05	15.29	0.01	1.894	11.95	2.04	1.8	98.2	0.0	0.65	0.75	0.81	3.55	3.1	0.004	0.62	0.0	0.06	16.33	0.00	1.726	4.28	1.04	1.7	98.3	0.0	1.90	1.18	0.78	0.86	3.57	102924	6576	36	0	48	72	51060	logfile
✔	8C94	16501	2024-02-13	2023-01-21	3.8	4.29	4.13	3.8	0.002	0.41	0.0	0.03	22.44	0.00	1.610	7.44	0.00	5.3	94.7	0.0	0.23	0.79	0.79	1.17	3.9	0.006	0.74	0.0	0.04	23.16	0.01	1.946	25.45	3.87	10.3	89.6	0.1	-1.91	1.43	0.81	0.84	1.30	54560	2070	21	1787	0	0	0	logfile
✔	8C92	16499	2024-02-13	2023-01-21	3.79	4.24	4.02	3.8	0.002	0.38	0.0	0.03	22.72	0.00	1.872	5.69	0.00	4.5	95.4	0.1	0.46	0.83	0.79	1.60	3.8	0.003	0.54	0.0	0.03	23.05	0.00	2.032	15.59	3.53	7.0	93.0	0.0	-0.87	0.53	0.84	0.83	1.67	53489	1700	17	1873	0	0	0	logfile
✔	8C8Y	16495	2024-02-19	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	3.1	0.005	0.62	0.0	0.04	23.05	0.00	2.004	10.10	3.98	7.9	92.0	0.1	-1.27	0.46	0.80	0.87	2.56	77316	2566	25	2667	0	0	0	logfile
✔	8C91	16498	2024-02-14	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	22.46	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.71	0.0	0.04	24.09	0.01	1.946	33.40	0.00	10.5	89.4	0.1	-2.06	0.97	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	8C8T	16493	2024-02-17	2023-01-21	3.2	3.50	3.27	3.5	0.004	0.67	0.0	0.05	14.74	0.01	2.135	5.88	0.10	3.0	96.9	0.1	-0.55	0.68	0.83	3.00	3.5	0.003	0.64	0.0	0.05	14.64	0.00	2.165	5.67	2.40	4.3	95.6	0.1	-0.69	0.37	0.65	0.85	3.03	19762	2502	32	0	56	0	0	logfile
✔	8C98	16505	2024-02-21	2023-01-21	3.66	4.27	3.73	3.6	0.002	0.38	0.0	0.03	22.60	0.00	1.923	5.79	0.00	4.7	95.3	0.0	1.35	0.79	0.72	1.74	3.6	0.004	0.57	0.0	0.03	23.01	0.00	2.084	14.57	2.73	8.2	91.8	0.0	-0.81	0.59	0.79	0.83	1.31	30284	1080	12	1018	0	0	0	logfile
✔	8C95	16502	2024-02-23	2023-01-21	4.92	6.10	5.53	4.8	0.002	0.42	0.0	0.03	23.21	0.00	1.886	8.94	0.09	5.1	94.9	0.0	0.20	0.84	0.82	—	4.8	0.005	0.76	0.0	0.04	24.56	0.01	1.894	49.43	0.00	10.6	89.4	0.0	-1.86	1.96	0.85	0.86	—	40172	1460	16	1339	0	0	0	logfile
✔	8C8X	16494	2024-02-20	2023-01-21	3.93	4.35	4.27	3.9	0.004	0.40	0.0	0.03	22.69	0.00	1.690	6.44	0.30	4.8	95.1	0.1	0.41	0.80	0.74	0.78	3.9	0.005	0.64	0.0	0.03	23.51	0.00	1.724	19.94	4.47	8.1	91.9	0.0	-1.43	1.45	0.82	0.80	1.08	82776	2832	28	2824	0	0	0	logfile
✔	8C8Z	16496	2024-02-16	2023-01-21	3.12	3.41	3.24	3.1	0.002	0.42	0.0	0.03	22.60	0.00	1.882	6.67	0.05	7.0	93.0	0.1	0.01	0.77	0.79	2.28	3.1	0.004	0.57	0.0	0.03	22.72	0.00	2.029	11.75	3.19	7.9	92.0	0.1	-1.11	1.33	0.80	0.85	2.27	67990	2311	24	2324	0	0	0	logfile
✔	8C96	16503	2024-02-24	2023-01-21	4.43	5.03	4.86	4.4	0.001	0.36	0.0	0.03	22.54	0.00	1.928	6.57	0.08	3.8	96.1	0.1	0.57	0.83	0.79	—	4.4	0.006	0.74	0.0	0.04	24.03	0.01	1.999	39.58	0.00	8.3	91.7	0.0	-1.84	0.94	0.84	0.85	—	44214	1607	16	1475	0	0	0	logfile
✔	8C90	16497	2024-02-15	2023-01-21	3.15	3.51	3.31	3.1	0.002	0.38	0.0	0.03	22.69	0.00	1.866	5.45	0.00	5.1	94.8	0.0	0.48	0.79	0.79	1.77	3.2	0.005	0.67	1.0	0.04	22.98	0.00	2.026	13.54	3.66	8.0	92.0	0.0	-0.91	0.50	0.81	0.84	1.82	64726	2183	22	2219	0	0	0	logfile
✔	8C99	16506	2024-02-20	2023-01-21	3.29	3.69	3.33	3.3	0.002	0.39	0.0	0.03	22.33	0.00	1.957	5.35	0.00	4.7	95.3	0.0	0.97	0.79	0.79	2.26	3.3	0.006	0.66	0.0	0.04	22.76	0.00	2.068	12.62	2.00	8.6	91.4	0.0	-0.99	0.55	0.81	0.85	2.21	27988	987	11	945	0	0	0	logfile
✔	8C9A	16507	2024-02-17	2023-01-21	4.86	5.39	4.92	4.8	0.001	0.45	0.0	0.04	22.91	0.00	1.924	6.58	0.23	3.6	96.4	0.0	1.73	0.82	0.76	—	4.8	0.008	0.97	0.0	0.06	25.39	0.01	1.977	53.82	0.00	9.1	90.9	0.0	-2.33	2.13	0.85	0.85	—	18059	525	7	650	0	0	0	logfile
✔	8C97	16504	2024-02-23	2023-01-21	4.07	4.81	4.16	4.0	0.002	0.39	0.0	0.03	23.09	0.00	1.904	5.95	0.00	4.6	95.2	0.2	0.72	0.80	0.75	—	4.0	0.004	0.62	0.0	0.03	23.84	0.00	1.806	22.26	0.00	8.3	91.4	0.3	-1.49	0.75	0.80	0.83	—	36163	1077	12	1292	0	0	0	logfile
✔	8i4Z	35189	2024-02-25	2023-01-21	3.97	3.62	3.92	3.8	0.012	1.81	8.0	0.10	12.61	0.02	2.548	0.06	0.74	3.8	96.2	0.0	-0.79	0.81	0.73	2.91	3.7	0.005	0.67	0.0	0.04	14.17	0.01	1.859	6.62	1.12	5.7	94.3	0.0	-0.79	1.59	0.84	0.80	2.06	48977	3374	3	0	1	0	24348	logfile

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