Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i4Y	35188	2024-02-25	2023-01-21	3.84	3.60	3.74	3.6	0.012	1.83	12.0	0.10	12.83	0.02	2.536	0.04	1.16	3.9	96.1	0.0	-0.81	0.80	0.73	2.97	3.6	0.003	0.60	0.0	0.04	14.13	0.00	1.887	5.22	1.16	2.8	97.2	0.0	-0.15	1.56	0.82	0.80	1.77	49016	3374	4	0	4	0	24348	logfile
✔	8i51	35190	2024-02-19	2023-01-21	2.76	2.98	2.80	3.0	0.012	1.10	18.0	0.10	16.82	0.01	2.130	10.05	0.69	8.5	91.3	0.2	-1.86	0.71	0.73	3.66	3.0	0.002	0.62	0.0	0.05	17.11	0.00	2.035	7.37	1.53	7.4	92.5	0.2	-0.79	1.11	0.79	0.86	3.41	25416	3168	12	0	18	0	0	logfile
✘	8C8H	16476	2024-02-24	2023-01-20	3.84	4.03	3.97	3.9	0.002	0.56	0.0	0.04	14.85	0.01	2.105	7.26	4.29	6.6	93.4	0.0	-3.34	0.82	0.73	1.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41296	4915	27	63	5	61	0	logfile
✔	8FW9	29498	2024-02-18	2023-01-20	4.46	4.77	4.47	4.5	0.012	1.19	0.0	0.07	10.84	0.00	2.330	1.88	0.08	5.1	94.1	0.9	-0.82	0.76	0.77	—	4.5	0.003	0.69	0.0	0.04	13.09	0.00	2.087	13.42	0.04	8.2	91.8	0.0	0.20	2.38	0.76	0.79	—	21612	2712	3	0	0	0	0	logfile
✔	8C8G	16475	2024-02-18	2023-01-20	2.98	3.19	3.05	3.2	0.013	1.50	1.0	0.08	14.19	0.01	2.198	6.69	0.88	8.0	91.8	0.2	-4.21	0.72	0.89	4.21	3.2	0.005	0.63	0.0	0.04	16.34	0.00	2.083	10.13	2.06	5.8	94.2	0.0	-0.91	0.43	0.71	0.87	3.30	20362	2530	2	0	0	0	0	logfile
✔	8C8P	16490	2024-02-13	2023-01-20	4.1	5.09	4.13	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.004	0.74	0.0	0.05	13.71	0.00	2.115	22.57	0.00	8.1	91.9	0.0	-1.12	1.09	0.68	0.73	—	2449	314	2	0	0	0	0	logfile
✔	8FW2	29496	2024-02-18	2023-01-20	3.8	4.07	3.81	4.0	0.011	1.16	0.0	0.07	10.69	0.00	2.235	1.40	0.17	5.3	94.0	0.7	-0.39	0.71	0.78	1.64	4.0	0.003	0.71	0.0	0.04	15.36	0.00	2.029	10.15	2.06	6.6	93.3	0.0	-0.17	2.99	0.71	0.76	1.20	21612	2712	3	0	0	0	0	logfile
✔	8FWB	29500	2024-02-22	2023-01-20	3.14	3.48	3.19	3.6	0.005	0.83	0.0	0.05	15.00	0.00	2.237	11.31	2.57	12.8	87.2	0.0	-3.49	0.48	0.84	2.30	3.5	0.003	0.68	0.0	0.04	17.22	0.00	2.207	9.10	3.72	10.9	89.1	0.0	-1.10	0.60	0.44	0.83	1.99	35256	4572	12	0	0	0	0	logfile
✔	8FWD	29502	2024-02-20	2023-01-20	3.67	4.15	3.98	4.1	0.003	0.52	0.0	0.03	12.69	0.00	2.375	1.50	0.05	0.8	99.2	0.0	1.38	0.75	0.78	1.41	4.1	0.002	0.49	0.0	0.03	15.42	0.00	2.122	5.88	1.42	1.7	98.3	0.0	3.56	0.78	0.72	0.76	1.49	83280	5736	48	0	0	0	40200	logfile
✔	8FWC	29501	2024-02-22	2023-01-20	2.96	3.30	3.10	3.3	0.009	1.00	0.0	0.06	16.49	0.01	2.093	9.74	16.67	10.3	89.7	0.0	-3.32	0.71	0.85	3.94	3.3	0.005	0.75	0.0	0.05	16.84	0.01	2.104	6.59	4.41	6.9	93.1	0.0	-0.27	2.50	0.70	0.87	3.56	100740	13380	60	0	0	0	0	logfile
✔	8FVW	29494	2024-02-19	2023-01-19	2.1	2.22	2.16	2.2	0.004	0.61	0.0	0.04	14.75	0.00	1.974	8.97	0.07	1.9	98.1	0.0	0.42	0.72	0.88	4.32	2.2	0.003	0.58	0.0	0.04	16.97	0.00	1.945	7.95	0.78	2.4	97.6	0.0	0.46	0.36	0.73	0.89	4.25	26108	3165	17	52	5	225	0	logfile
✔	8i4H	35173	2024-02-13	2023-01-19	3.81	3.30	3.92	3.7	0.001	0.43	0.0	0.04	9.23	0.00	2.262	10.14	5.85	7.4	92.6	0.0	-4.65	0.69	0.64	1.02	3.6	0.004	0.90	0.0	0.05	14.40	0.01	2.151	22.47	5.71	14.5	85.5	0.0	-3.14	1.85	0.72	0.69	1.32	6539	833	2	0	0	0	0	logfile
✔	8FVR	29491	2024-02-19	2023-01-19	2.42	2.64	2.53	2.7	0.003	0.64	0.0	0.05	14.46	0.01	2.002	8.85	0.07	2.4	97.6	0.0	0.56	0.72	0.88	3.95	2.6	0.003	0.55	0.0	0.04	16.85	0.00	1.956	7.49	1.08	2.2	97.8	0.0	0.96	0.96	0.72	0.89	3.79	26040	3165	17	51	3	201	0	logfile
✔	8i4A	35167	2024-02-14	2023-01-19	3.4	3.59	3.42	3.6	0.012	0.94	0.0	0.05	15.10	0.01	2.115	13.72	0.00	5.1	94.9	0.0	-1.46	0.61	0.79	2.13	3.6	0.003	0.57	0.0	0.04	15.93	0.00	2.222	8.20	2.26	2.0	98.0	0.0	1.22	1.13	0.57	0.78	1.04	9763	1218	1	0	1	0	0	logfile
✔	8i4G	35172	2024-02-13	2023-01-19	3.68	2.81	3.67	3.8	0.002	0.63	0.0	0.04	10.19	0.00	2.246	6.82	5.71	9.0	91.0	0.0	-4.78	0.68	0.65	1.56	3.2	0.004	0.78	0.0	0.05	14.66	0.00	2.185	16.68	5.71	11.9	88.1	0.0	-3.20	1.25	0.70	0.68	1.50	6057	768	2	0	0	0	0	logfile
✔	8C89	16473	2024-02-13	2023-01-19	4.41	3.51	3.83	2.2	0.007	1.10	0.0	0.09	14.36	0.01	2.149	25.75	0.71	10.4	89.3	0.3	-2.47	0.75	0.77	—	2.1	0.005	0.84	0.0	0.05	13.56	0.01	2.119	33.70	0.00	13.8	86.1	0.2	-2.03	0.59	0.70	0.65	—	5106	652	5	0	4	0	0	logfile
✔	8i4F	35171	2024-02-13	2023-01-19	3.44	2.60	3.44	3.5	0.002	0.45	0.0	0.04	9.63	0.00	2.232	8.93	5.44	6.5	93.5	0.0	-4.30	0.70	0.66	1.85	3.5	0.004	0.78	0.0	0.05	14.92	0.00	2.153	17.59	5.13	10.6	89.4	0.0	-2.62	1.24	0.73	0.72	1.60	5824	738	2	0	0	0	0	logfile
✔	8FVU	29493	2024-02-17	2023-01-19	3.6	3.85	3.65	3.8	0.012	1.22	0.0	0.07	10.95	0.00	2.338	2.29	0.00	6.9	91.7	1.4	-1.70	0.80	0.83	2.31	3.8	0.003	0.67	0.0	0.04	15.50	0.00	2.179	7.30	2.19	8.9	91.0	0.1	-1.04	2.31	0.78	0.82	2.05	18758	2344	4	0	4	0	0	logfile
✔	8i4M	35175	2024-02-19	2023-01-19	3.81	4.11	3.85	4.0	0.003	0.67	0.0	0.04	16.95	0.00	2.042	11.62	0.28	5.0	94.8	0.2	0.30	0.68	0.82	1.47	4.0	0.003	0.63	0.0	0.04	17.55	0.00	2.132	10.52	3.79	5.5	94.3	0.1	0.51	1.76	0.68	0.83	1.46	134400	17436	48	0	0	0	0	logfile
✔	8i4B	35168	2024-02-14	2023-01-19	3.13	3.35	3.17	3.4	0.017	1.07	0.0	0.06	14.07	0.01	2.161	11.06	0.00	6.0	94.0	0.0	-2.17	0.60	0.75	2.25	3.4	0.004	0.56	0.0	0.04	15.64	0.00	2.091	7.00	0.94	1.9	98.1	0.0	1.56	1.55	0.60	0.81	1.74	9727	1218	1	0	0	0	0	logfile

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