Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i3W	35160	2024-02-20	2023-01-18	2.8	2.94	2.82	2.9	0.004	0.71	0.0	0.05	14.07	0.01	1.868	13.14	0.00	8.0	92.0	0.0	-1.71	0.70	0.76	2.68	2.9	0.003	0.62	0.0	0.05	15.55	0.00	2.090	10.88	1.62	8.1	91.9	0.0	-1.17	0.36	0.71	0.79	2.40	27000	3345	21	0	69	0	0	logfile
✔	8C81	16468	2024-02-16	2023-01-18	3.3	3.77	3.41	3.7	0.007	0.64	0.0	0.05	15.20	0.00	2.225	3.97	0.00	3.7	96.3	0.0	0.64	0.67	0.82	2.60	3.7	0.002	0.52	0.0	0.04	15.57	0.00	2.169	4.39	0.94	3.3	96.7	0.0	1.01	0.26	0.74	0.88	2.18	15709	1938	8	0	6	0	0	logfile
✔	8C82	16469	2024-02-18	2023-01-18	3.4	3.85	3.56	3.8	0.008	0.67	0.0	0.05	15.03	0.00	2.108	4.64	0.09	3.0	97.0	0.0	0.90	0.70	0.81	2.29	3.8	0.003	0.55	0.0	0.04	16.15	0.00	2.212	4.35	1.43	3.9	96.1	0.0	1.23	0.45	0.71	0.84	2.19	21070	2618	12	0	6	0	0	logfile
✔	8i49	35165	2024-02-25	2023-01-18	2.41	2.54	2.47	2.5	0.015	1.46	29.0	0.09	16.84	0.01	2.263	7.48	0.43	6.1	93.8	0.2	-1.51	0.75	0.85	4.17	2.5	0.003	0.57	0.0	0.04	16.26	0.00	2.097	3.44	0.40	4.5	95.3	0.2	-0.03	0.41	0.75	0.84	3.95	50754	3180	12	0	6	0	25248	logfile
✔	8FUZ	29482	2024-02-19	2023-01-18	2.1	2.08	2.21	2.1	0.007	0.86	0.0	0.05	18.07	0.01	2.232	4.59	1.17	2.1	97.9	0.0	0.92	0.78	0.91	5.73	2.1	0.005	0.65	0.0	0.05	17.89	0.01	2.251	3.46	1.85	2.2	97.8	0.0	0.61	0.32	0.77	0.91	5.68	24008	3120	16	0	16	0	0	logfile
✔	8FUV	29481	2024-02-14	2023-01-18	3.1	3.21	2.89	3.1	0.003	0.59	0.0	0.04	12.83	0.00	2.169	5.52	0.00	5.6	94.4	0.0	-0.17	0.36	0.86	3.59	3.1	0.004	0.60	0.0	0.05	14.33	0.01	2.182	6.60	2.40	5.7	93.9	0.4	-0.61	1.17	0.37	0.89	3.81	10170	1368	7	0	0	0	0	logfile
✔	8FVG	29486	2024-02-25	2023-01-18	3.1	2.34	3.16	3.2	0.004	0.66	0.0	0.05	14.20	0.00	2.106	8.55	0.00	5.7	94.3	0.0	-0.63	0.26	0.75	2.01	3.1	0.019	0.86	0.0	0.05	16.32	0.01	2.109	8.32	3.97	7.5	92.5	0.0	-0.66	1.36	0.26	0.78	2.16	48009	6409	13	0	0	0	0	logfile
✘	8BQW	16189	2024-02-17	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✔	8FVH	29487	2024-02-17	2023-01-18	3.1	3.49	3.43	3.5	0.003	0.59	0.0	0.04	14.72	0.00	2.050	7.34	0.07	4.4	95.5	0.1	0.53	0.57	0.84	2.10	3.5	0.003	0.60	0.0	0.04	16.75	0.00	2.063	8.72	3.09	4.7	95.1	0.1	0.75	0.42	0.56	0.85	1.72	70392	8886	36	0	0	0	0	logfile
✔	8i3U	35156	2024-02-13	2023-01-18	3.6	3.90	3.39	3.8	0.002	0.54	0.0	0.04	9.20	0.00	2.198	8.85	1.09	1.9	98.1	0.0	-0.52	0.64	0.75	3.16	3.8	0.003	0.64	0.0	0.04	15.29	0.01	2.181	9.15	4.90	5.3	94.7	0.0	-0.61	0.73	0.69	0.78	2.69	3408	437	4	0	1	0	0	logfile
✘	8BQV	16188	2024-02-14	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8C80	16467	2024-02-15	2023-01-18	3.4	3.89	3.54	3.8	0.009	0.87	1.0	0.06	14.76	0.01	1.975	6.41	0.75	4.2	95.8	0.0	-1.48	0.65	0.77	1.46	3.8	0.002	0.56	0.0	0.04	15.48	0.00	2.257	4.95	2.34	3.2	96.8	0.0	0.31	0.80	0.70	0.84	2.10	10968	1350	7	0	6	0	0	logfile
✔	8C83	16470	2024-02-24	2023-01-18	3.0	3.59	3.11	3.0	0.005	0.98	0.0	0.05	23.13	0.01	2.217	4.85	0.68	6.1	93.9	0.0	-2.10	0.88	0.84	2.11	3.0	0.004	0.76	2.0	0.04	22.73	0.00	1.945	12.70	2.51	6.1	93.8	0.0	-0.17	0.42	0.89	0.86	2.11	45803	2725	18	1177	0	0	0	logfile
✔	8FUG	29458	2024-02-20	2023-01-17	2.7	2.73	2.58	2.9	0.007	1.33	0.0	0.57	23.66	0.00	2.220	7.47	3.12	9.9	90.1	0.0	-3.91	0.64	0.80	3.98	2.9	0.003	0.67	0.0	0.05	16.69	0.00	2.115	6.57	4.35	11.3	88.7	0.0	-3.24	0.78	0.65	0.84	3.88	26634	1679	46	0	23	0	13317	logfile
✔	8i3Q	35154	2024-02-13	2023-01-17	3.1	3.03	2.94	3.1	0.005	0.83	0.0	0.05	22.35	0.02	1.762	14.07	5.39	7.2	92.8	0.0	0.08	0.79	0.76	3.10	3.0	0.003	0.59	0.0	0.03	21.74	0.00	2.087	8.07	1.16	5.8	94.2	0.0	1.44	1.99	0.80	0.80	2.43	6998	595	3	95	1	0	0	logfile
✔	8i3i	35153	2024-02-16	2023-01-17	2.68	2.94	2.69	2.9	0.007	0.94	4.0	0.06	15.82	0.01	2.175	6.83	0.44	7.1	92.7	0.2	-1.00	0.81	0.86	3.85	2.9	0.004	0.64	0.0	0.05	16.87	0.00	2.181	8.32	2.89	8.0	91.8	0.2	-0.77	1.07	0.82	0.87	3.69	16808	2088	8	0	8	0	0	logfile
✔	8FUK	29459	2024-02-19	2023-01-17	3.36	3.71	3.47	3.7	0.003	0.56	0.0	0.04	17.11	0.01	2.068	8.01	0.24	4.4	95.6	0.0	0.29	0.78	0.85	2.82	3.7	0.002	0.51	0.0	0.04	17.52	0.00	2.182	8.21	3.26	4.2	95.8	0.0	0.59	0.34	0.74	0.82	2.51	23608	2784	11	60	0	0	0	logfile
✔	8i3D	35150	2024-02-14	2023-01-17	2.81	3.08	2.87	3.1	0.009	0.99	2.0	0.06	13.50	0.01	2.328	2.52	0.83	5.6	94.4	0.0	-5.74	0.67	0.88	3.66	3.1	0.005	0.67	0.0	0.04	15.62	0.00	2.305	4.98	2.70	4.9	95.1	0.0	0.08	0.41	0.64	0.89	3.24	8798	1132	2	0	0	0	0	logfile
✔	8i3S	35155	2024-02-13	2023-01-17	3.9	4.12	3.88	4.1	0.003	0.59	0.0	0.05	11.40	0.00	2.235	14.76	2.54	2.9	97.1	0.0	-1.18	0.64	0.72	2.12	4.1	0.004	0.70	0.0	0.05	15.56	0.01	2.174	18.33	5.93	5.8	94.2	0.0	-1.01	2.26	0.65	0.74	1.20	3272	420	4	0	1	0	0	logfile
✔	8i35	35144	2024-02-20	2023-01-16	2.75	2.99	2.81	2.9	0.007	0.89	0.0	0.06	16.85	0.01	2.220	10.49	0.29	8.7	91.2	0.2	-1.50	0.76	0.77	4.12	2.9	0.004	0.53	0.0	0.05	17.23	0.00	2.062	23.08	1.23	7.9	91.9	0.2	-0.96	2.06	0.83	0.88	3.55	26070	3168	12	0	6	0	744	logfile

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