Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C4E	16425	2024-02-13	2023-01-03	2.6	2.28	2.42	2.4	0.005	0.66	0.0	0.04	16.88	0.00	1.847	4.09	1.13	2.5	97.4	0.1	0.56	0.71	0.86	5.33	2.4	0.004	0.62	0.0	0.04	16.97	0.00	1.779	5.22	1.85	2.6	97.3	0.1	0.91	0.87	0.71	0.86	5.12	57100	3648	20	0	24	0	28304	logfile
✔	8FoU	29354	2024-02-19	2023-01-03	3.3	3.70	3.37	3.7	0.003	0.60	0.0	0.04	16.43	0.00	0.843	25.35	0.00	4.8	95.2	0.0	-2.68	0.72	0.85	2.90	3.7	0.005	0.64	0.0	0.05	16.83	0.00	2.192	12.56	4.13	6.3	93.7	0.0	-2.23	0.42	0.73	0.86	1.98	23280	3048	24	0	0	0	0	logfile
✔	8FoY	29355	2024-02-20	2023-01-03	2.9	3.20	2.93	3.2	0.009	0.80	0.0	0.05	12.11	0.00	0.765	17.48	0.00	9.0	90.8	0.2	-2.06	0.55	0.87	4.32	3.2	0.003	0.57	0.0	0.04	15.28	0.00	2.106	9.37	2.52	6.1	93.9	0.0	0.17	1.03	0.55	0.90	4.07	90072	12000	24	0	0	0	0	logfile
✔	8HWT	35064	2024-02-15	2023-01-02	2.91	2.42	2.95	2.1	0.003	0.56	0.0	0.04	12.84	0.00	2.241	6.29	0.22	4.0	96.0	0.0	0.29	0.72	0.74	3.81	2.1	0.003	0.58	0.0	0.04	14.97	0.00	2.230	6.10	2.64	4.1	95.9	0.0	0.36	0.30	0.79	0.81	3.36	8077	1058	5	0	0	0	0	logfile
✔	8HWS	35063	2024-02-17	2023-01-02	2.36	2.29	2.51	2.0	0.004	0.57	0.0	0.04	15.87	0.00	2.174	7.59	3.26	3.4	96.6	0.0	0.53	0.78	0.78	3.76	2.1	0.004	0.59	0.0	0.04	15.86	0.00	2.167	7.67	3.11	4.1	95.9	0.0	0.63	0.23	0.81	0.83	3.81	11511	1508	8	0	3	0	0	logfile
✔	8HWQ	35062	2024-02-18	2023-01-02	3.58	3.88	3.67	3.8	0.003	0.68	0.0	0.04	17.35	0.00	2.253	8.78	0.21	6.4	93.4	0.3	-1.29	0.60	0.75	1.95	3.8	0.004	0.83	1.0	0.04	17.92	0.00	2.239	10.06	2.46	7.5	92.5	0.0	-1.34	1.26	0.62	0.78	1.83	20783	2576	7	0	0	0	0	logfile
✔	8C44	16416	2024-02-13	2022-12-31	3.2	3.59	3.22	3.5	0.020	1.66	0.0	0.10	12.79	0.02	2.336	10.29	0.54	3.1	96.9	0.0	1.28	0.67	0.71	2.67	3.5	0.004	0.65	0.0	0.04	16.09	0.00	2.151	13.66	2.50	2.6	97.4	0.0	1.23	1.53	0.64	0.74	2.51	5239	623	3	0	2	0	0	logfile
✔	8FoJ	29351	2024-02-17	2022-12-30	4.8	3.41	4.43	3.3	0.009	0.90	1.0	0.04	13.63	0.01	2.138	9.71	0.05	3.7	96.3	0.0	0.08	0.80	0.61	—	3.3	0.003	0.58	0.0	0.04	14.07	0.00	2.124	11.47	0.11	3.5	96.5	0.0	0.41	1.30	0.82	0.65	—	17538	2151	7	21	1	0	0	logfile
✘	8FoB	29344	2024-02-18	2022-12-30	2.71	2.96	2.77	3.0	0.024	1.57	0.0	0.54	21.84	0.01	2.073	8.34	0.39	8.3	91.7	0.0	-5.44	0.60	0.72	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20390	2376	12	0	46	52	0	logfile
✘	8FoA	29343	2024-02-18	2022-12-30	2.66	2.96	2.81	2.9	0.023	1.52	0.0	0.53	22.53	0.01	2.298	7.30	0.42	5.2	94.7	0.0	-5.28	0.66	0.84	4.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21287	2448	8	0	53	0	0	logfile
✔	8FoD	29346	2024-02-17	2022-12-30	3.8	3.04	3.70	3.8	0.006	0.83	0.0	0.05	14.42	0.01	2.167	9.55	0.27	2.8	97.1	0.1	0.31	0.69	0.61	1.32	3.8	0.004	0.66	0.0	0.04	16.10	0.00	2.148	11.79	2.39	3.4	96.6	0.0	0.00	2.09	0.70	0.63	1.37	17489	2224	5	0	1	0	0	logfile
✔	8Fo9	29342	2024-02-13	2022-12-30	3.48	3.95	3.52	3.5	0.004	0.81	2.0	0.05	13.64	0.01	2.227	6.71	0.22	7.1	92.9	0.0	-0.96	0.80	0.71	1.54	3.5	0.003	0.62	0.0	0.04	15.03	0.00	2.183	10.75	1.21	6.5	93.5	0.0	-0.76	1.21	0.85	0.84	1.31	53742	7253	14	4	4	0	0	logfile
✔	8FoH	29349	2024-02-17	2022-12-30	4.6	4.87	4.51	4.3	0.013	1.46	4.0	0.09	13.11	0.01	1.447	3.87	0.49	2.6	97.3	0.1	-0.42	0.89	0.68	—	4.3	0.004	0.58	0.0	0.04	13.09	0.00	2.090	11.61	0.00	1.9	98.1	0.0	2.14	1.28	0.94	0.81	—	16996	2048	7	20	1	0	0	logfile
✔	8FoC	29345	2024-02-17	2022-12-30	3.7	3.17	3.67	3.6	0.005	0.67	0.0	0.04	14.50	0.01	2.236	9.15	0.39	1.5	98.5	0.1	1.23	0.73	0.68	1.71	3.6	0.003	0.74	1.0	0.04	15.82	0.00	1.701	9.98	2.12	1.7	98.2	0.0	1.16	0.59	0.75	0.71	1.66	18382	2287	5	0	1	0	0	logfile
✔	8FoK	29352	2024-02-17	2022-12-30	3.56	3.95	3.62	3.5	0.008	0.92	1.0	0.04	16.60	0.01	2.141	9.65	0.15	2.3	97.7	0.0	0.89	0.84	0.68	1.87	3.5	0.004	0.54	0.0	0.04	16.64	0.00	2.103	11.84	1.35	2.8	97.2	0.0	1.27	1.89	0.94	0.83	2.00	18827	2261	7	35	1	0	0	logfile
✘	8Foi	29350	2024-02-23	2022-12-30	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35120	2120	21	0	81	0	16834	logfile
✔	8Fo8	29341	2024-02-23	2022-12-29	3.88	4.23	3.89	4.0	0.005	0.90	0.0	0.05	13.75	0.01	1.951	8.40	0.00	7.3	92.7	0.0	-1.22	0.73	0.62	1.19	4.0	0.008	0.82	1.0	0.05	15.74	0.00	1.987	13.81	2.12	7.7	92.3	0.0	-1.03	0.73	0.79	0.71	0.94	36432	4884	8	2	2	0	0	logfile
✔	8HWA	35051	2024-02-19	2022-12-29	3.7	3.83	3.62	3.7	0.003	0.58	0.0	0.04	16.33	0.00	1.956	7.52	0.35	3.7	96.2	0.1	-1.15	0.79	0.85	2.20	3.7	0.002	0.56	0.0	0.04	16.58	0.00	1.949	7.80	2.71	3.6	96.3	0.1	-0.69	1.15	0.79	0.85	1.89	25740	3147	13	6	10	0	0	logfile
✘	8HWG	35057	2024-02-17	2022-12-29	3.0	3.09	2.85	3.0	0.004	0.66	0.0	0.04	18.54	0.00	1.832	7.63	4.33	6.0	93.9	0.0	-1.90	0.76	0.87	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18110	2209	13	6	12	0	0	logfile
✔	8C3Y	16415	2024-02-13	2022-12-29	3.8	4.37	3.84	4.1	0.018	1.56	0.0	0.10	10.95	0.01	2.226	7.90	0.48	3.7	96.0	0.3	0.34	0.79	0.76	0.80	4.2	0.003	0.77	0.0	0.04	16.14	0.00	2.125	18.40	2.78	5.5	94.2	0.2	0.86	2.75	0.78	0.77	1.01	7580	929	1	0	0	0	0	logfile

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