Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HWF	35056	2024-02-17	2022-12-29	3.3	3.50	3.27	3.4	0.003	0.66	0.0	0.04	17.29	0.00	2.039	8.34	0.15	4.7	95.3	0.0	-1.24	0.76	0.87	2.45	3.4	0.004	0.63	0.0	0.04	17.61	0.00	1.974	8.72	3.27	6.5	93.5	0.0	-0.48	0.31	0.76	0.88	2.43	18441	2251	13	6	9	0	0	logfile
✔	8HWC	35053	2024-02-16	2022-12-29	3.3	3.53	3.33	3.5	0.003	0.60	0.0	0.04	16.49	0.00	2.245	10.08	0.30	6.5	93.5	0.0	-1.80	0.69	0.76	2.11	3.5	0.004	0.62	0.0	0.04	16.85	0.00	2.131	10.14	2.25	7.2	92.8	0.0	-1.52	1.21	0.72	0.82	2.10	14943	1836	6	0	0	0	0	logfile
✘	8HWE	35055	2024-02-17	2022-12-29	3.3	3.47	3.28	3.5	0.003	0.61	0.0	0.04	17.84	0.00	1.956	10.09	0.62	8.5	91.5	0.0	-1.52	0.72	0.80	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17247	2112	12	0	11	0	0	logfile
✔	8Fo8	29341	2024-02-23	2022-12-29	3.88	4.23	3.89	4.0	0.005	0.90	0.0	0.05	13.75	0.01	1.951	8.40	0.00	7.3	92.7	0.0	-1.22	0.73	0.62	1.19	4.0	0.008	0.82	1.0	0.05	15.74	0.00	1.987	13.81	2.12	7.7	92.3	0.0	-1.03	0.73	0.79	0.71	0.94	36432	4884	8	2	2	0	0	logfile
✔	8HWD	35054	2024-02-16	2022-12-29	3.3	3.51	3.30	3.5	0.004	0.73	0.0	0.04	18.03	0.00	2.199	14.55	1.25	8.6	91.3	0.1	-1.70	0.67	0.73	1.46	3.5	0.003	0.67	0.0	0.04	18.15	0.00	2.164	11.99	5.24	7.8	92.2	0.0	-1.37	0.38	0.66	0.71	1.30	15029	1834	12	0	6	0	0	logfile
✔	8HWH	35058	2024-02-17	2022-12-29	3.6	3.88	3.70	3.8	0.003	0.71	0.0	0.04	17.52	0.00	2.198	10.76	0.42	4.9	95.0	0.1	-1.34	0.76	0.80	1.44	3.8	0.005	0.70	0.0	0.04	18.04	0.00	2.102	12.55	4.45	7.1	92.9	0.0	-1.03	0.52	0.77	0.81	1.06	16948	2079	7	6	0	0	0	logfile
✔	8C3Y	16415	2024-02-13	2022-12-29	3.8	4.37	3.84	4.1	0.018	1.56	0.0	0.10	10.95	0.01	2.226	7.90	0.48	3.7	96.0	0.3	0.34	0.79	0.76	0.80	4.2	0.003	0.77	0.0	0.04	16.14	0.00	2.125	18.40	2.78	5.5	94.2	0.2	0.86	2.75	0.78	0.77	1.01	7580	929	1	0	0	0	0	logfile
✘	8HW4	35050	2024-02-15	2022-12-28	3.52	3.89	3.62	3.8	0.033	1.39	0.0	0.17	15.27	0.01	2.142	14.67	0.09	8.2	91.8	0.0	-2.38	0.67	0.80	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10746	1364	1	0	2	0	0	logfile
✔	8FNV	29327	2024-02-18	2022-12-28	2.11	2.24	2.15	2.2	0.007	1.36	12.0	0.07	18.52	0.02	2.014	8.59	3.84	5.7	93.5	0.8	0.03	0.71	0.82	3.84	2.2	0.003	0.62	0.0	0.04	17.95	0.00	2.066	9.09	1.40	5.2	94.3	0.5	1.22	0.47	0.74	0.87	4.17	74928	9237	24	0	12	0	0	logfile
✔	8HW1	35080	2024-02-20	2022-12-28	3.13	3.07	2.93	3.2	0.028	2.49	0.0	0.29	22.71	0.03	2.137	14.51	6.74	11.3	88.7	0.0	-2.57	0.68	0.85	3.07	3.2	0.003	1.00	0.0	0.05	20.47	0.01	1.605	7.26	1.46	9.4	90.6	0.0	-0.42	0.44	0.67	0.86	3.24	29271	2651	22	0	143	0	0	logfile
✘	8FNT	29323	2024-02-24	2022-12-28	2.52	2.49	2.40	2.6	0.010	1.80	0.0	0.11	19.93	0.03	1.042	23.04	10.57	9.0	89.8	1.3	-2.16	0.63	0.74	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43868	5490	7	0	0	0	0	logfile
✔	8HW2	35049	2024-02-15	2022-12-28	3.65	4.12	3.84	4.0	0.011	0.86	0.0	0.05	14.86	0.01	2.154	14.21	0.09	7.2	92.8	0.0	-2.33	0.69	0.80	1.01	4.0	0.003	0.73	0.0	0.04	16.55	0.00	2.229	12.20	2.64	6.9	93.1	0.0	-1.19	1.15	0.68	0.79	1.20	10853	1375	1	0	2	0	0	logfile
✔	8FNU	29326	2024-02-24	2022-12-28	2.5	2.64	2.51	2.6	0.006	1.29	0.0	0.06	17.42	0.02	1.867	12.22	4.47	9.1	90.0	0.9	-0.70	0.62	0.75	2.44	2.6	0.003	0.64	0.0	0.04	17.95	0.00	2.162	9.64	2.65	7.5	91.5	1.0	0.50	1.27	0.69	0.83	2.59	46214	5572	7	0	0	0	0	logfile
✔	8FNF	29311	2024-02-17	2022-12-27	3.5	3.74	3.58	3.8	0.004	0.66	0.0	0.04	18.02	0.00	2.212	8.53	1.02	3.2	96.8	0.0	0.62	0.68	0.76	0.99	3.7	0.004	0.60	0.0	0.04	18.46	0.00	2.190	5.90	2.83	3.4	96.6	0.0	1.64	1.22	0.73	0.82	0.90	17080	2065	8	36	0	0	0	logfile
✔	8FNE	29310	2024-02-22	2022-12-27	3.9	4.66	—	4.1	0.018	1.78	0.0	0.10	11.33	0.01	2.452	0.27	0.00	1.0	99.0	0.0	0.31	0.56	0.44	0.56	4.1	0.004	0.67	0.0	0.04	16.16	0.01	1.969	17.76	2.88	4.8	95.2	0.0	-0.30	1.63	0.66	0.72	0.71	33508	2148	8	0	0	0	16644	logfile
✔	8FN6	29306	2024-02-18	2022-12-27	3.7	3.97	3.74	4.0	0.003	0.65	0.0	0.04	17.58	0.00	2.196	11.03	0.60	6.0	93.9	0.0	-0.22	0.75	0.75	0.14	3.9	0.002	0.60	0.0	0.04	17.78	0.00	2.120	10.33	3.69	6.2	93.8	0.0	0.06	0.37	0.76	0.76	0.27	22421	2729	8	46	1	0	0	logfile
✔	8HVR	35047	2024-02-22	2022-12-27	3.35	3.51	3.40	3.4	0.004	0.72	0.0	0.05	17.11	0.01	2.199	7.13	0.12	2.7	97.3	0.0	-0.66	0.77	0.74	1.75	3.4	0.003	0.63	0.0	0.04	18.58	0.00	2.092	11.83	2.45	3.2	96.8	0.0	0.41	0.45	0.81	0.79	1.59	33932	4041	14	122	3	0	0	logfile
✔	8FNC	29308	2024-02-17	2022-12-27	3.3	3.36	3.23	3.3	0.003	0.55	0.0	0.04	17.65	0.00	2.191	6.51	0.90	2.3	97.7	0.0	0.86	0.75	0.84	2.25	3.3	0.003	0.51	0.0	0.04	17.96	0.00	2.211	5.79	1.70	2.2	97.8	0.0	1.49	0.40	0.77	0.87	2.29	17017	2065	8	33	0	0	0	logfile
✔	8FNi	29314	2024-02-20	2022-12-27	3.4	3.51	3.41	3.4	0.002	0.50	0.0	0.04	15.36	0.00	2.247	7.14	0.03	2.3	97.7	0.0	1.46	0.78	0.82	1.66	3.4	0.004	0.55	0.0	0.04	16.38	0.00	2.161	8.39	1.93	3.1	96.9	0.0	1.67	0.26	0.79	0.85	1.34	28858	3559	11	37	0	0	0	logfile
✔	8HVT	35048	2024-02-15	2022-12-27	3.6	3.70	3.55	3.6	0.009	1.11	0.0	0.06	16.30	0.01	2.279	5.59	0.00	6.4	93.6	0.0	-2.49	0.61	0.88	3.03	3.6	0.003	0.64	0.0	0.04	15.94	0.00	2.189	8.39	1.75	4.7	95.3	0.0	2.19	0.36	0.61	0.87	2.13	10702	1366	8	0	12	0	0	logfile

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