Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FNF	29311	2024-02-17	2022-12-27	3.5	3.74	3.58	3.8	0.004	0.66	0.0	0.04	18.02	0.00	2.212	8.53	1.02	3.2	96.8	0.0	0.62	0.68	0.76	0.99	3.7	0.004	0.60	0.0	0.04	18.46	0.00	2.190	5.90	2.83	3.4	96.6	0.0	1.64	1.22	0.73	0.82	0.90	17080	2065	8	36	0	0	0	logfile
✔	8FMY	29300	2024-02-14	2022-12-26	2.66	3.65	2.84	3.4	0.008	1.16	0.0	0.06	12.10	0.01	2.417	0.31	0.00	2.2	97.8	0.0	-1.16	0.89	0.88	4.56	3.4	0.002	0.55	0.0	0.04	14.10	0.00	2.353	1.97	0.55	3.4	96.6	0.0	0.99	1.49	0.84	0.83	3.32	9597	1260	3	0	0	0	0	logfile
✔	8HVi	35044	2024-02-14	2022-12-26	3.04	4.28	3.02	3.2	0.005	0.96	0.0	0.05	15.41	0.01	2.255	9.87	0.62	3.8	96.1	0.1	-1.79	0.79	0.80	4.09	3.2	0.002	0.53	0.0	0.04	15.64	0.00	2.244	10.26	2.05	3.6	96.4	0.0	-0.08	0.27	0.88	0.92	3.97	8988	1148	6	0	1	0	0	logfile
✔	8FN4	29305	2024-02-18	2022-12-26	3.7	3.85	3.80	3.8	0.003	0.55	0.0	0.04	13.16	0.00	2.208	11.82	0.80	6.3	93.7	0.0	-0.53	0.76	0.77	1.39	3.8	0.002	0.60	0.0	0.04	15.51	0.00	2.178	10.17	2.64	5.8	94.1	0.0	0.42	1.13	0.76	0.78	0.79	20638	2625	6	0	0	0	0	logfile
✔	8FN1	29303	2024-02-14	2022-12-26	2.88	2.15	2.86	1.9	0.004	0.59	0.0	0.06	9.15	0.00	2.173	7.25	0.23	2.5	97.5	0.0	1.17	0.78	0.79	4.36	1.9	0.003	0.53	0.0	0.04	13.10	0.00	2.249	7.07	2.38	2.7	97.3	0.0	1.55	0.46	0.78	0.79	3.63	8444	1116	6	0	0	0	0	logfile
✔	8HVH	35043	2024-02-15	2022-12-26	3.07	3.42	3.30	3.5	0.005	0.76	0.0	0.05	14.43	0.00	2.107	10.76	0.00	6.3	93.7	0.0	-3.04	0.65	0.77	1.38	3.5	0.003	0.66	0.0	0.04	16.78	0.00	2.110	8.96	3.34	4.3	95.7	0.0	-0.28	1.22	0.62	0.80	1.62	10704	1364	1	0	0	0	0	logfile
✔	8FN0	29302	2024-02-14	2022-12-26	2.89	2.19	2.89	2.1	0.006	1.29	0.0	0.09	10.62	0.01	2.225	6.24	0.11	1.9	98.1	0.0	1.16	0.78	0.80	3.85	2.0	0.003	0.62	0.0	0.04	14.70	0.00	1.889	6.36	1.70	2.2	97.8	0.0	1.25	1.03	0.78	0.80	3.14	8502	1120	7	0	1	0	0	logfile
✔	8FN2	29304	2024-02-20	2022-12-26	3.4	3.90	3.78	3.3	0.006	0.88	0.0	0.10	21.94	0.00	2.063	7.04	0.00	7.0	93.0	0.0	-1.00	0.79	0.79	1.35	3.3	0.005	0.98	0.0	0.10	22.80	0.00	1.985	16.32	3.30	6.4	93.6	0.0	-0.54	2.30	0.82	0.86	1.34	89742	3633	36	2874	2	0	0	logfile
✔	8FMX	29299	2024-02-14	2022-12-26	3.37	4.30	3.60	3.9	0.005	0.93	0.0	0.06	14.52	0.01	2.404	0.43	0.00	2.6	97.4	0.0	-1.06	0.89	0.86	2.70	3.9	0.003	0.56	0.0	0.04	14.27	0.00	2.227	5.19	0.87	2.8	97.2	0.0	0.99	1.23	0.89	0.88	2.45	10329	1335	9	0	12	0	0	logfile
✔	8FMZ	29301	2024-02-14	2022-12-26	2.59	2.79	2.62	2.9	0.004	0.57	0.0	0.04	8.86	0.00	2.264	6.51	0.21	1.7	98.3	0.0	1.58	0.57	0.77	3.79	2.8	0.003	0.55	0.0	0.04	14.28	0.00	2.172	5.87	2.77	2.2	97.8	0.0	1.67	1.08	0.66	0.86	3.72	8768	1126	6	0	0	0	0	logfile
✔	8FMW	29298	2024-02-26	2022-12-25	2.86	3.40	3.00	3.1	0.005	0.86	0.0	0.08	22.49	0.00	2.015	7.35	0.04	6.5	93.5	0.0	-0.67	0.87	0.86	2.66	3.1	0.003	0.88	0.0	0.08	22.71	0.00	2.033	11.13	2.50	4.5	95.5	0.0	0.20	1.17	0.88	0.88	2.15	147910	6347	62	4646	4	0	0	logfile
✔	8FMV	29297	2024-02-18	2022-12-24	3.34	2.46	—	1.9	0.007	0.86	0.0	0.04	19.29	0.01	2.200	6.02	0.10	6.1	93.9	0.0	0.37	0.80	0.82	2.31	3.0	0.005	0.82	0.0	0.04	18.00	0.00	1.804	10.11	1.72	6.3	93.7	0.0	0.48	0.92	0.80	0.83	2.32	20441	1234	4	0	25	0	9940	logfile
✔	8HUJ	35041	2024-02-13	2022-12-24	3.76	2.84	3.69	2.7	0.005	0.83	0.0	0.06	22.48	0.00	2.203	13.57	2.51	3.2	96.8	0.0	-0.39	0.74	0.78	1.43	2.7	0.003	0.59	0.0	0.04	21.98	0.00	2.207	14.84	7.36	3.1	96.9	0.0	0.63	0.43	0.74	0.78	0.80	7143	621	3	99	3	1	0	logfile
✔	8HUD	35035	2024-02-14	2022-12-23	3.43	3.64	3.43	3.6	0.005	0.84	0.0	0.06	20.89	0.00	2.284	10.27	0.56	9.8	90.2	0.0	-1.38	0.71	0.70	1.64	3.6	0.003	0.54	0.0	0.04	20.42	0.00	2.163	9.35	2.94	7.0	93.0	0.0	-0.50	1.27	0.73	0.74	1.51	8670	767	4	108	0	0	0	logfile
✔	8C2H	16390	2024-02-14	2022-12-22	2.64	2.34	2.44	2.5	0.009	1.45	3.0	0.08	17.61	0.01	2.319	2.75	6.15	3.5	96.5	0.0	-1.37	0.57	0.85	5.38	2.5	0.003	0.52	0.0	0.04	15.34	0.00	2.142	3.75	3.17	1.2	98.8	0.0	2.46	0.50	0.64	0.88	4.13	10071	1238	24	0	12	86	0	logfile
✔	8FLQ	29283	2024-02-14	2022-12-22	2.55	2.78	2.65	2.8	0.003	0.57	0.0	0.04	13.87	0.00	2.209	7.54	0.21	2.1	97.9	0.0	1.35	0.64	0.70	3.93	2.9	0.007	0.66	0.0	0.05	15.98	0.00	2.119	9.35	0.64	3.2	96.8	0.0	1.12	0.35	0.64	0.83	3.42	8992	1146	9	0	0	14	0	logfile
✔	8C2i	16391	2024-02-14	2022-12-22	2.7	2.45	2.60	2.7	0.010	1.27	3.0	0.08	17.79	0.01	2.222	5.50	4.07	2.8	97.1	0.1	0.27	0.63	0.85	4.11	2.7	0.002	0.49	0.0	0.04	16.25	0.00	2.265	4.44	3.49	1.1	98.9	0.0	2.68	1.22	0.64	0.84	3.56	10366	1259	24	0	16	32	0	logfile
✔	8FLU	29287	2024-02-14	2022-12-22	2.76	3.00	2.82	3.1	0.004	0.70	0.0	0.05	13.28	0.00	2.223	12.74	0.35	3.0	96.9	0.1	0.56	0.64	0.74	3.48	3.1	0.004	0.61	0.0	0.04	16.14	0.00	2.124	12.62	2.54	2.7	97.3	0.0	1.15	0.99	0.64	0.78	2.89	8725	1141	9	0	0	5	0	logfile
✔	8FLW	29288	2024-02-16	2022-12-22	3.58	3.64	3.59	3.7	0.005	0.80	5.0	0.06	17.20	0.01	1.644	4.67	0.81	4.5	95.3	0.3	0.01	0.76	0.79	2.93	3.7	0.003	0.64	0.0	0.05	14.61	0.00	2.141	5.87	2.19	4.2	95.8	0.0	-0.47	1.27	0.78	0.81	2.85	16868	1971	37	0	102	0	0	logfile
✔	8FM9	29289	2024-02-19	2022-12-22	3.2	3.48	3.49	3.6	0.002	0.45	0.0	0.04	11.34	0.00	1.810	6.85	0.00	2.7	97.3	0.0	0.35	0.46	0.71	2.23	3.5	0.004	0.61	0.0	0.05	13.41	0.00	2.016	7.31	1.70	4.7	95.2	0.2	1.12	1.46	0.48	0.78	2.39	76764	7692	24	0	0	0	29916	logfile

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