Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BoG	44735	2025-02-13	2024-05-03	3.99	2.85	3.93	3.9	0.002	0.54	0.0	0.04	14.61	0.00	2.218	6.86	0.29	3.2	96.8	0.0	0.13	0.76	0.72	2.01	2.3	0.004	0.72	0.0	0.05	15.47	0.00	2.516	10.20	7.29	5.5	94.5	0.0	-0.20	1.33	0.77	0.77	2.20	9370	1438	4	0	0	0	0	logfile
✔	9F6P	50237	2025-02-11	2024-05-02	3.7	3.92	3.71	4.0	0.004	0.93	0.0	0.05	18.01	0.01	2.090	19.52	2.05	2.7	97.3	0.0	1.39	0.48	0.70	1.10	4.0	0.004	0.81	0.0	0.04	17.78	0.00	2.167	15.41	6.15	4.2	95.8	0.0	1.13	0.79	0.53	0.74	0.37	3720	482	2	0	1	0	0	logfile
✔	9F6o	50236	2025-02-11	2024-05-02	3.9	4.30	4.10	4.2	0.004	0.80	0.0	0.04	17.49	0.00	2.268	16.41	3.07	3.2	96.8	0.0	0.92	0.55	0.76	0.55	4.2	0.003	0.77	0.0	0.04	17.51	0.00	2.475	14.56	4.92	2.9	97.1	0.0	1.24	0.51	0.55	0.76	0.93	4571	591	2	0	0	0	0	logfile
✔	9F6Q	50238	2025-02-11	2024-05-02	3.9	4.14	3.83	4.2	0.004	0.83	0.0	0.04	15.98	0.01	2.219	16.19	2.62	4.1	95.9	0.0	1.22	0.54	0.71	0.79	4.2	0.004	1.04	0.0	0.05	16.68	0.01	2.483	21.36	5.25	4.1	95.9	0.0	1.04	0.69	0.53	0.72	0.79	3618	469	1	0	0	0	0	logfile
✔	9F6N	50235	2025-02-11	2024-05-02	3.6	3.87	3.62	3.8	0.008	1.19	0.0	0.05	16.58	0.01	1.906	3.91	2.80	3.4	96.6	0.0	-0.74	0.53	0.77	1.34	3.8	0.003	0.77	0.0	0.04	16.75	0.00	2.249	10.93	5.09	3.6	96.4	0.0	2.23	1.37	0.58	0.80	1.07	3652	471	2	0	1	0	0	logfile
✔	9BLT	44676	2025-02-12	2024-05-01	3.38	3.70	3.50	3.8	0.003	0.51	0.0	0.04	18.59	0.00	2.218	8.29	2.72	4.8	95.2	0.0	0.49	0.71	0.79	1.81	3.8	0.003	0.53	0.0	0.04	18.64	0.00	2.464	7.17	2.98	3.8	96.2	0.0	0.80	0.81	0.70	0.79	1.67	7098	921	4	0	0	0	0	logfile
✔	9BLS	44675	2025-02-12	2024-05-01	2.96	3.23	3.00	3.3	0.003	0.51	0.0	0.04	19.38	0.00	2.224	8.42	3.62	5.9	94.1	0.0	0.28	0.67	0.80	2.45	3.3	0.004	0.56	0.0	0.04	19.45	0.00	2.579	7.30	3.62	5.4	94.6	0.0	0.57	0.21	0.64	0.78	2.18	7112	921	4	0	0	0	0	logfile
✔	9F6K	50227	2025-02-14	2024-05-01	4.2	4.50	4.10	4.4	0.003	0.66	0.0	0.04	16.57	0.01	2.304	2.22	0.10	2.1	97.9	0.0	-1.36	0.74	0.79	—	4.3	0.003	0.62	0.0	0.04	16.38	0.00	2.400	4.69	0.00	1.9	98.1	0.0	0.96	1.65	0.76	0.81	—	9637	1118	4	26	1	0	0	logfile
✔	9BLU	44677	2025-02-11	2024-05-01	3.38	3.73	3.50	3.8	0.003	0.45	0.0	0.04	18.95	0.00	2.214	6.89	3.18	2.9	97.1	0.0	1.22	0.68	0.79	1.04	3.8	0.003	0.51	0.0	0.04	19.26	0.00	2.612	5.81	2.89	3.3	96.7	0.0	1.38	0.20	0.68	0.80	1.00	6377	831	3	0	0	0	0	logfile
✔	9F6L	50228	2025-02-14	2024-05-01	3.9	4.20	3.90	4.1	0.003	0.67	0.0	0.04	16.41	0.01	2.141	1.48	0.00	1.9	98.1	0.0	-1.02	0.75	0.80	1.37	4.1	0.002	0.60	0.0	0.04	17.80	0.00	2.311	4.69	1.11	1.5	98.5	0.0	1.56	0.68	0.76	0.82	0.76	9639	1118	4	26	3	0	0	logfile
✔	9F6J	50226	2025-02-14	2024-05-01	3.9	4.11	3.87	4.0	0.003	0.64	0.0	0.04	16.08	0.01	2.253	1.83	0.00	1.1	98.9	0.0	-1.09	0.75	0.79	1.83	4.0	0.002	0.59	0.0	0.04	17.58	0.00	2.527	4.44	2.02	1.6	98.4	0.0	1.03	0.82	0.76	0.80	1.67	9751	1118	4	32	1	0	0	logfile
✔	8ZCJ	39931	2025-02-12	2024-04-29	3.09	3.33	3.11	3.4	0.007	0.93	1.0	0.05	16.04	0.01	2.258	9.36	0.44	5.3	94.6	0.1	-1.54	0.62	0.69	1.51	3.3	0.004	0.71	0.0	0.04	16.54	0.00	2.231	9.57	4.41	5.9	94.1	0.0	-1.21	0.39	0.63	0.71	1.96	7808	1126	7	0	1	0	0	logfile
✘	9BKJ	44642	2025-02-11	2024-04-29	2.59	2.90	2.70	2.9	0.005	0.75	0.0	0.05	12.93	0.00	2.260	9.17	0.71	2.0	97.8	0.2	1.02	0.61	0.68	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6795	891	6	0	1	0	0	logfile
✔	9BKK	44643	2025-02-11	2024-04-29	2.51	2.85	2.68	2.9	0.012	1.75	2.0	0.10	12.29	0.01	2.388	6.33	2.54	4.5	94.6	0.9	-1.67	0.46	0.61	2.41	2.9	0.003	0.67	0.0	0.04	15.75	0.00	2.344	6.70	1.97	2.4	97.6	0.0	1.41	1.15	0.56	0.73	2.40	6809	890	6	0	1	0	0	logfile
✔	8ZC5	39923	2025-02-11	2024-04-28	3.91	4.07	3.86	4.0	0.004	0.76	0.0	0.05	13.55	0.01	2.258	4.88	0.00	4.4	95.6	0.0	-1.55	0.74	0.78	2.73	4.0	0.004	0.67	0.0	0.05	15.17	0.00	2.542	8.74	1.42	4.9	95.1	0.0	-1.24	1.46	0.76	0.80	2.40	6515	830	8	0	2	0	0	logfile
✔	8ZC1	39919	2025-02-11	2024-04-28	4.17	4.43	4.20	4.3	0.003	0.75	0.0	0.05	13.38	0.01	2.313	5.92	0.00	4.3	95.7	0.0	-1.66	0.73	0.72	—	4.3	0.003	0.70	0.0	0.05	13.50	0.01	2.485	10.28	0.00	6.2	93.8	0.0	-1.68	0.62	0.75	0.74	—	4570	597	3	0	0	0	0	logfile
✔	8ZBQ	39907	2025-02-11	2024-04-27	3.03	3.22	3.02	3.2	0.006	0.92	2.0	0.05	16.51	0.01	2.261	24.87	6.41	9.8	90.2	0.0	-2.05	0.66	0.78	2.44	3.2	0.004	0.63	0.0	0.04	16.86	0.00	2.455	12.76	4.37	7.4	92.6	0.0	-0.88	1.27	0.66	0.81	2.39	6346	779	2	0	0	0	0	logfile
✔	9F43	50182	2025-02-13	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	3.7	0.004	0.61	0.0	0.04	15.70	0.00	2.565	7.63	2.88	4.4	95.5	0.1	0.54	0.57	0.66	0.80	1.41	8465	1061	2	0	0	0	0	logfile
✔	8ZBA	39899	2025-02-14	2024-04-26	3.57	3.81	3.60	3.8	0.003	0.59	0.0	0.04	13.82	0.00	2.234	8.37	0.00	10.7	89.3	0.0	-2.46	0.70	0.76	2.09	3.8	0.005	0.71	0.0	0.05	16.50	0.00	2.456	9.40	2.81	12.1	87.8	0.1	-2.60	2.03	0.72	0.79	1.77	9973	1267	4	0	0	0	0	logfile
✔	8ZB9	39898	2025-02-11	2024-04-26	3.31	3.44	3.32	3.5	0.007	0.87	0.0	0.05	16.83	0.01	2.267	16.36	0.37	14.2	85.8	0.0	-3.11	0.73	0.86	3.12	3.5	0.003	0.62	0.0	0.04	17.50	0.00	2.516	6.92	5.16	9.1	90.9	0.0	-2.07	0.43	0.72	0.85	3.07	4904	622	2	0	0	0	0	logfile

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