Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZBE	39901	2025-02-12	2024-04-26	3.24	3.44	3.22	3.4	0.005	0.90	0.0	0.05	15.39	0.00	2.276	11.65	0.00	6.2	93.8	0.0	-2.05	0.60	0.66	0.71	3.4	0.004	0.66	0.0	0.04	16.30	0.00	2.491	9.33	6.62	5.9	94.1	0.0	-1.09	0.45	0.61	0.68	1.04	7489	1113	7	0	1	0	0	logfile
✔	9F43	50182	2025-02-13	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	3.7	0.004	0.61	0.0	0.04	15.70	0.00	2.565	7.63	2.88	4.4	95.5	0.1	0.54	0.57	0.66	0.80	1.41	8465	1061	2	0	0	0	0	logfile
✔	8ZAP	39883	2025-02-11	2024-04-25	2.6	2.77	2.58	2.8	0.003	0.60	0.0	0.04	16.03	0.01	1.487	8.32	4.19	2.6	97.4	0.0	1.24	0.71	0.89	4.03	2.8	0.003	0.52	0.0	0.04	15.63	0.00	2.633	5.07	2.84	2.3	97.7	0.0	2.69	0.59	0.69	0.89	3.52	6442	776	9	0	27	36	0	logfile
✔	8ZAo	39882	2025-02-11	2024-04-25	2.6	3.07	2.73	3.0	0.003	0.57	0.0	0.04	15.64	0.01	1.601	7.52	1.64	1.2	98.8	0.0	1.98	0.53	0.85	5.36	3.0	0.004	0.54	0.0	0.04	15.76	0.00	2.617	4.67	2.84	1.3	98.7	0.0	2.38	0.42	0.51	0.84	5.32	6432	777	9	0	18	30	0	logfile
✔	8ZAN	39881	2025-02-11	2024-04-25	2.4	2.80	2.50	2.7	0.003	0.65	0.0	0.04	17.05	0.01	2.309	9.70	2.96	5.3	93.4	1.2	1.81	0.65	0.89	4.62	2.7	0.003	0.65	0.0	0.04	16.89	0.01	2.325	7.66	2.71	7.0	92.6	0.4	2.10	0.40	0.51	0.84	4.29	3938	492	4	0	2	0	0	logfile
✔	9F3F	50173	2025-02-12	2024-04-25	2.4	2.90	2.38	2.7	0.008	1.18	1.0	0.07	16.34	0.01	2.180	16.32	2.45	4.3	95.7	0.0	-0.13	0.84	0.84	3.55	2.6	0.003	0.63	0.0	0.04	17.69	0.00	2.541	8.29	3.19	3.3	96.7	0.0	1.48	0.57	0.83	0.86	3.23	7496	939	4	1	0	0	0	logfile
✔	8ZAQ	39884	2025-02-11	2024-04-25	2.6	2.80	2.62	2.8	0.003	0.59	0.0	0.04	16.95	0.01	1.092	8.94	2.39	2.6	97.4	0.0	1.48	0.69	0.89	4.17	2.8	0.004	0.59	0.0	0.04	16.83	0.01	2.601	6.25	3.29	1.2	98.8	0.0	2.38	0.27	0.67	0.89	4.33	6449	776	9	0	27	36	0	logfile
✔	8ZAM	39880	2025-02-11	2024-04-25	2.5	2.87	2.53	2.8	0.007	0.87	0.0	0.04	22.82	0.01	2.265	9.50	2.46	5.3	94.7	0.0	1.70	0.60	0.88	2.77	2.8	0.003	0.57	0.0	0.04	18.52	0.00	2.565	9.37	2.22	4.5	95.5	0.0	2.13	0.42	0.53	0.85	3.01	4000	492	4	0	2	0	0	logfile
✔	9BiU	44602	2025-02-13	2024-04-24	2.9	3.33	2.90	3.2	0.003	0.56	0.0	0.04	17.10	0.00	2.204	4.85	2.00	7.0	93.0	0.0	0.77	0.63	0.84	2.63	3.2	0.003	0.59	0.0	0.04	17.12	0.00	2.239	5.49	1.80	6.6	93.4	0.0	0.80	0.33	0.62	0.84	2.50	9458	595	3	0	1	0	4738	logfile
✔	9BiT	44601	2025-02-13	2024-04-24	3.1	3.27	3.05	3.2	0.003	0.60	0.0	0.04	18.48	0.01	2.073	6.13	1.60	6.8	93.2	0.0	-0.05	0.60	0.83	2.75	3.2	0.002	0.54	0.0	0.04	18.29	0.00	2.262	4.44	2.20	5.8	94.2	0.0	0.73	0.33	0.63	0.85	2.71	9448	595	3	0	1	0	4734	logfile
✔	9BiS	44600	2025-02-13	2024-04-24	3.2	3.55	3.16	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.56	0.0	0.04	18.21	0.00	2.292	5.18	1.80	7.0	93.0	0.0	0.89	0.79	0.61	0.84	3.06	9444	595	3	0	1	0	4734	logfile
✔	9Bi9	44577	2025-02-12	2024-04-23	2.61	3.67	2.64	3.4	0.003	0.53	0.0	0.04	12.52	0.00	2.243	5.09	0.00	4.4	95.6	0.0	0.82	0.72	0.75	3.46	3.4	0.004	0.62	0.0	0.04	14.90	0.01	2.378	5.10	0.96	4.0	96.0	0.0	0.53	2.17	0.75	0.79	2.50	7578	497	2	0	1	0	3712	logfile
✔	9BiA	44585	2025-02-14	2024-04-23	3.0	3.28	3.03	3.3	0.003	0.60	0.0	0.04	13.72	0.00	2.333	1.44	0.00	1.8	98.2	0.0	0.99	0.44	0.77	3.80	3.3	0.003	0.50	0.0	0.04	15.97	0.00	2.412	4.03	1.08	0.9	98.9	0.2	3.44	0.66	0.51	0.82	2.92	10430	672	6	0	0	0	5263	logfile
✔	9BiM	44593	2025-02-11	2024-04-23	3.67	3.99	3.69	4.0	0.004	0.75	0.0	0.04	13.02	0.01	2.259	4.86	0.00	2.9	97.1	0.0	0.00	0.55	0.80	1.98	4.0	0.003	0.58	0.0	0.04	13.70	0.00	2.635	6.23	1.45	2.7	97.3	0.0	1.78	0.33	0.60	0.82	1.38	3992	516	2	0	1	0	0	logfile
✔	9BHW	44555	2025-02-13	2024-04-22	2.72	3.56	2.84	3.3	0.005	0.72	0.0	0.05	14.14	0.00	2.158	6.79	0.31	2.0	98.0	0.0	0.77	0.85	0.86	4.93	3.3	0.004	0.63	0.0	0.04	15.95	0.00	2.464	5.02	1.13	2.4	97.6	0.0	1.94	0.67	0.79	0.85	4.16	8759	1071	8	4	0	0	0	logfile
✔	9BHX	44556	2025-02-13	2024-04-22	3.94	4.14	3.93	4.1	0.013	1.34	0.0	0.05	17.52	0.01	1.661	20.33	0.44	6.7	92.8	0.5	-1.38	0.72	0.75	1.79	4.1	0.004	0.75	0.0	0.04	18.07	0.01	2.473	11.68	4.98	7.9	91.9	0.2	-1.28	0.56	0.73	0.76	1.62	8376	1048	1	0	0	0	0	logfile
✘	8Z7Y	39832	2025-02-10	2024-04-21	3.02	3.16	2.95	3.2	0.013	0.80	0.0	0.04	16.15	0.00	2.215	10.80	0.00	2.6	97.4	0.0	1.07	0.48	0.67	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3083	382	2	0	1	0	0	logfile
✔	8Z7Z	39833	2025-02-10	2024-04-21	3.23	3.39	3.23	3.4	0.005	0.71	0.0	0.04	13.23	0.00	2.169	7.79	0.00	3.1	96.9	0.0	0.75	0.46	0.63	1.41	3.4	0.004	0.66	0.0	0.04	15.62	0.01	2.544	12.50	1.91	3.4	96.6	0.0	1.43	1.11	0.47	0.67	-0.21	2834	389	2	0	1	0	0	logfile
✔	8Z7R	39825	2025-02-10	2024-04-21	3.15	3.31	3.10	3.4	0.005	0.77	0.0	0.04	16.63	0.01	2.214	9.16	0.60	3.9	96.1	0.0	-0.35	0.53	0.79	2.54	3.4	0.004	0.68	0.0	0.04	16.63	0.00	2.595	9.96	4.20	2.9	97.1	0.0	1.64	0.41	0.57	0.81	1.81	3098	387	1	0	0	0	0	logfile
✔	8Z7S	39826	2025-02-10	2024-04-21	3.05	3.26	2.92	3.3	0.004	0.56	0.0	0.04	16.81	0.01	2.234	8.47	0.30	2.9	97.1	0.0	0.35	0.59	0.83	1.68	3.3	0.003	0.60	0.0	0.04	16.94	0.00	2.589	8.95	3.30	2.1	97.9	0.0	2.73	0.43	0.58	0.83	2.11	3116	387	2	0	1	0	0	logfile

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