Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z7Z	39833	2025-02-10	2024-04-21	3.23	3.39	3.23	3.4	0.005	0.71	0.0	0.04	13.23	0.00	2.169	7.79	0.00	3.1	96.9	0.0	0.75	0.46	0.63	1.41	3.4	0.004	0.66	0.0	0.04	15.62	0.01	2.544	12.50	1.91	3.4	96.6	0.0	1.43	1.11	0.47	0.67	-0.21	2834	389	2	0	1	0	0	logfile
✔	8Z7X	39831	2025-02-10	2024-04-21	3.36	3.51	3.34	3.5	0.006	0.80	0.0	0.05	13.91	0.00	2.198	8.66	0.00	4.0	96.0	0.0	-0.59	0.52	0.70	1.15	3.5	0.004	0.65	0.0	0.04	15.66	0.00	2.560	10.19	2.28	4.0	96.0	0.0	0.53	0.99	0.51	0.72	0.43	2955	376	2	0	1	0	0	logfile
✔	8Z7U	39828	2025-02-10	2024-04-21	3.1	3.31	3.03	3.3	0.014	0.90	1.0	0.05	19.01	0.01	2.218	15.72	0.90	3.1	96.9	0.0	-0.32	0.58	0.82	2.48	3.3	0.004	0.66	0.0	0.04	17.48	0.00	2.592	8.26	3.00	1.3	98.7	0.0	1.95	1.05	0.54	0.80	3.05	3135	387	2	0	1	0	0	logfile
✔	8Z7T	39827	2025-02-10	2024-04-21	3.39	3.55	3.23	3.6	0.003	0.62	0.0	0.04	16.89	0.01	2.208	10.57	0.60	3.4	96.6	0.0	0.43	0.56	0.82	1.51	3.6	0.003	0.67	0.0	0.04	17.16	0.00	2.582	8.17	2.70	1.3	98.7	0.0	1.78	0.43	0.57	0.82	1.68	3110	387	2	0	1	0	0	logfile
✘	8Z7Y	39832	2025-02-10	2024-04-21	3.02	3.16	2.95	3.2	0.013	0.80	0.0	0.04	16.15	0.00	2.215	10.80	0.00	2.6	97.4	0.0	1.07	0.48	0.67	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3083	382	2	0	1	0	0	logfile
✔	8Z7R	39825	2025-02-10	2024-04-21	3.15	3.31	3.10	3.4	0.005	0.77	0.0	0.04	16.63	0.01	2.214	9.16	0.60	3.9	96.1	0.0	-0.35	0.53	0.79	2.54	3.4	0.004	0.68	0.0	0.04	16.63	0.00	2.595	9.96	4.20	2.9	97.1	0.0	1.64	0.41	0.57	0.81	1.81	3098	387	1	0	0	0	0	logfile
✔	8Z7L	39819	2025-02-11	2024-04-20	3.42	2.85	3.35	1.4	0.002	0.45	0.0	0.04	8.76	0.00	2.324	6.07	4.12	4.9	95.1	0.0	-2.92	0.86	0.86	3.47	1.4	0.004	0.69	0.0	0.05	13.26	0.00	2.397	7.42	4.38	5.0	95.0	0.0	-1.21	0.67	0.87	0.90	3.32	6774	843	9	0	12	0	0	logfile
✔	8Z7G	39813	2025-02-14	2024-04-20	3.06	2.65	3.17	1.3	0.003	0.41	0.0	0.04	9.13	0.00	2.270	4.24	2.72	2.6	97.4	0.0	-0.26	0.90	0.85	2.66	1.3	0.006	0.96	1.0	0.05	12.95	0.00	2.064	11.06	1.63	5.2	94.7	0.1	1.01	0.66	0.91	0.88	2.35	10362	1329	6	0	18	0	0	logfile
✔	8Z6X	39807	2025-02-11	2024-04-19	2.96	3.13	2.88	1.8	0.003	0.54	0.0	0.05	9.21	0.00	2.186	4.00	3.07	7.2	92.6	0.2	-2.58	0.75	0.88	4.17	1.8	0.004	0.76	0.0	0.05	13.74	0.01	2.473	6.05	3.65	7.7	92.3	0.0	-0.66	1.78	0.76	0.92	3.65	4704	618	3	0	0	0	0	logfile
✔	8Z6T	39804	2025-02-11	2024-04-19	2.92	2.31	2.90	2.1	0.005	0.63	0.0	0.05	8.85	0.00	2.196	4.27	3.78	5.3	94.4	0.4	-2.88	0.61	0.74	3.34	2.1	0.004	0.70	0.0	0.05	13.39	0.00	2.569	7.19	4.18	6.2	93.8	0.0	-0.41	0.62	0.63	0.79	3.01	4526	589	3	0	0	0	0	logfile
✔	8Z7B	39811	2025-02-14	2024-04-19	3.3	2.94	3.27	1.4	0.003	0.47	0.0	0.04	13.47	0.00	2.279	5.18	2.96	2.9	97.1	0.0	-2.05	0.93	0.88	3.76	1.4	0.004	0.73	0.0	0.05	13.64	0.00	2.497	6.67	2.66	4.2	95.8	0.0	-0.04	1.96	0.95	0.92	3.22	9580	1145	13	0	24	0	0	logfile
✔	9BHB	44539	2025-02-10	2024-04-19	3.1	3.25	2.99	3.3	0.006	0.81	0.0	0.05	13.80	0.01	2.274	5.99	0.35	6.6	93.4	0.0	-2.11	0.60	0.83	4.31	3.3	0.004	0.59	0.0	0.04	15.08	0.00	2.533	7.72	3.52	5.1	94.9	0.0	0.51	0.81	0.59	0.84	3.98	2626	328	3	0	0	0	0	logfile
✔	8Z74	39810	2025-02-11	2024-04-19	3.01	2.28	3.02	2.1	0.003	0.63	0.0	0.04	14.94	0.00	2.235	13.45	0.00	3.9	96.1	0.0	0.52	0.73	0.74	2.84	2.1	0.003	0.64	0.0	0.04	15.17	0.00	2.558	10.41	2.78	3.2	96.8	0.0	0.52	0.27	0.71	0.73	2.95	6709	847	5	0	2	0	0	logfile
✔	9BFP	44502	2025-02-12	2024-04-18	2.78	3.22	2.80	3.1	0.007	1.23	2.0	0.07	13.56	0.01	2.356	2.52	0.00	2.7	97.3	0.0	-2.06	0.72	0.83	3.43	3.1	0.003	0.60	0.0	0.04	16.21	0.00	2.525	5.90	1.48	2.1	97.9	0.0	0.21	0.58	0.74	0.86	3.40	8263	1034	3	0	4	0	0	logfile
✔	9BFR	44504	2025-02-11	2024-04-18	3.19	3.40	3.23	3.4	0.006	1.11	0.0	0.06	13.10	0.01	2.440	1.77	0.00	2.9	97.1	0.0	-4.21	0.59	0.77	2.43	3.4	0.003	0.59	0.0	0.04	15.61	0.00	2.591	5.06	2.03	2.4	97.6	0.0	-1.13	0.57	0.61	0.79	2.17	6266	766	4	0	6	0	0	logfile
✔	8Z64	39791	2025-02-14	2024-04-18	3.53	2.39	3.45	2.1	0.003	0.49	0.0	0.04	10.50	0.00	2.227	6.24	3.20	4.5	95.5	0.0	-2.69	0.71	0.73	2.21	3.1	0.005	0.96	1.0	0.05	14.44	0.00	1.892	10.47	3.98	7.1	92.9	0.0	-0.90	0.64	0.74	0.75	2.35	9665	1162	11	0	21	0	0	logfile
✔	9BFi	44497	2025-02-11	2024-04-17	2.66	2.90	2.78	2.9	0.003	0.68	0.0	0.04	12.28	0.01	2.274	2.64	0.00	1.5	98.5	0.0	0.42	0.55	0.80	3.23	2.9	0.003	0.55	0.0	0.04	14.69	0.00	2.608	3.83	0.76	2.1	97.7	0.2	1.91	0.33	0.52	0.81	3.06	3766	489	1	0	0	0	0	logfile
✔	8Z4E	39762	2025-02-11	2024-04-17	3.0	2.37	3.12	2.1	0.003	0.61	1.0	0.05	12.62	0.00	2.230	8.56	0.00	6.1	93.4	0.5	-0.63	0.72	0.68	3.09	2.1	0.005	0.70	0.0	0.05	14.99	0.01	2.239	9.45	3.19	7.8	91.7	0.5	-0.82	2.54	0.74	0.73	3.00	6327	821	7	0	3	0	0	logfile
✔	9BFJ	44498	2025-02-11	2024-04-17	2.35	2.59	2.47	2.6	0.005	0.65	0.0	0.04	15.09	0.01	2.196	3.24	0.00	1.0	99.0	0.0	0.78	0.61	0.86	4.12	2.6	0.002	0.50	0.0	0.04	15.37	0.00	2.283	5.84	1.00	1.4	98.6	0.0	2.08	0.79	0.60	0.86	3.06	3833	496	2	0	3	0	0	logfile
✔	9F0L	50113	2025-02-11	2024-04-17	2.76	3.53	2.77	3.3	0.002	0.43	0.0	0.03	18.24	0.00	2.271	7.78	0.84	0.4	99.6	0.0	3.17	0.87	0.84	2.02	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.544	5.92	2.52	0.9	99.1	0.0	4.17	0.32	0.83	0.82	1.52	6119	791	1	0	0	0	0	logfile

• ← previous
• Page 17 of 255
• next →