Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BEi	44479	2025-02-11	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.003	0.73	0.0	0.04	14.57	0.01	2.444	15.81	0.00	8.1	91.8	0.1	-1.44	0.43	0.85	0.73	—	6649	862	5	0	0	0	0	logfile
✔	9BEE	44477	2025-02-10	2024-04-15	3.4	3.98	3.21	3.9	0.013	1.84	1.0	0.10	11.72	0.02	2.467	4.56	0.00	11.9	88.1	0.0	-2.32	0.47	0.59	1.69	3.9	0.002	0.58	0.0	0.05	15.83	0.00	2.356	6.19	3.45	3.8	96.2	0.0	-0.44	1.53	0.50	0.68	2.14	3046	189	2	0	7	0	1501	logfile
✔	8Z1X	39739	2025-02-14	2024-04-12	3.2	2.35	3.21	2.1	0.019	2.02	43.0	1.50	13.05	0.01	1.925	0.41	0.00	1.2	98.8	0.0	-1.03	0.69	0.73	4.07	2.1	0.013	2.33	0.0	0.45	15.69	0.00	2.320	5.63	2.33	1.4	98.6	0.0	1.02	0.55	0.81	0.81	2.90	9648	1240	6	0	3	0	0	logfile
✔	8Z1V	39737	2025-02-14	2024-04-12	3.16	2.44	3.14	2.1	0.025	2.21	84.0	0.24	12.47	0.01	2.288	0.52	0.00	0.7	99.3	0.0	-0.95	0.68	0.72	3.64	2.2	0.004	0.63	0.0	0.04	15.95	0.00	2.536	5.11	1.95	1.6	98.4	0.0	1.48	1.17	0.78	0.82	2.42	9562	1234	6	0	2	0	0	logfile
✔	8Z1W	39738	2025-02-14	2024-04-12	3.0	2.22	3.04	2.0	0.018	1.98	35.0	0.17	12.38	0.01	2.537	0.05	0.10	1.3	98.7	0.0	-0.48	0.67	0.73	4.77	2.0	0.004	0.93	1.0	0.05	16.02	0.00	2.524	5.24	1.75	1.7	98.3	0.0	1.65	0.48	0.78	0.82	3.52	9619	1237	6	0	3	0	0	logfile
✔	9BD8	44446	2025-02-11	2024-04-11	4.8	6.12	4.09	5.1	0.003	0.63	0.0	0.04	13.22	0.00	2.141	25.69	0.00	7.9	92.1	0.0	-2.18	0.86	0.81	—	5.1	0.003	0.65	0.0	0.04	13.24	0.00	2.532	21.15	0.00	8.8	91.2	0.0	-2.46	0.30	0.86	0.82	—	5369	726	3	0	1	0	0	logfile
✔	8Z1E	39724	2025-02-11	2024-04-11	3.12	3.44	3.19	3.4	0.002	0.43	0.0	0.03	14.56	0.00	2.273	4.34	0.44	1.2	98.8	0.0	0.87	0.57	0.82	1.73	3.4	0.003	0.51	0.0	0.04	15.38	0.00	2.473	5.40	3.92	1.6	98.4	0.0	2.39	0.31	0.65	0.86	1.49	6516	834	3	0	0	0	0	logfile
✔	8Z0P	39710	2025-02-13	2024-04-10	3.1	3.23	3.22	3.3	0.003	0.68	0.0	0.04	15.66	0.00	1.926	7.25	1.17	7.5	91.8	0.7	-1.15	0.58	0.73	2.06	3.2	0.003	0.65	0.0	0.04	16.41	0.00	1.921	4.87	1.95	8.7	90.4	0.9	-1.60	1.06	0.61	0.76	1.72	9246	586	2	0	3	0	4627	logfile
✔	8Z0T	39033	2025-02-11	2024-04-10	3.58	3.81	3.61	3.8	0.005	0.98	1.0	0.06	19.03	0.01	2.259	6.37	0.98	6.4	93.6	0.0	-1.26	0.72	0.79	1.79	3.8	0.003	0.63	0.0	0.05	16.78	0.00	2.471	8.08	4.76	6.5	93.5	0.0	-0.41	0.36	0.73	0.79	1.82	6556	802	9	0	17	0	0	logfile
✘	9EYK	50056	2025-02-11	2024-04-09	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6639	891	5	8	0	0	0	logfile
✘	9EYi	50054	2025-02-13	2024-04-09	2.75	3.13	2.83	3.0	0.005	0.63	0.0	0.04	15.67	0.00	2.211	10.26	2.15	3.3	96.7	0.0	0.12	0.82	0.81	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9453	1248	5	8	0	0	0	logfile
✔	9BCV	44440	2025-02-12	2024-04-09	3.2	3.43	3.23	3.4	0.003	0.86	0.0	0.04	15.57	0.00	1.994	2.45	0.64	1.9	98.1	0.0	-0.32	0.64	0.79	2.82	3.4	0.002	0.61	0.0	0.03	14.87	0.00	2.028	2.02	6.11	1.7	98.3	0.0	-0.28	0.25	0.64	0.79	3.21	7729	422	12	0	907	0	0	logfile
✔	9BCo	44432	2025-02-11	2024-04-09	4.4	4.70	4.38	4.6	0.005	0.88	1.0	0.05	12.78	0.01	2.105	8.36	0.00	7.3	92.7	0.0	-1.99	0.75	0.73	—	4.6	0.003	0.62	0.0	0.04	11.36	0.00	2.399	3.15	0.00	5.2	94.8	0.0	-0.07	0.71	0.76	0.76	—	6164	1038	4	0	2	0	0	logfile
✔	9EYJ	50055	2025-02-11	2024-04-09	2.97	3.34	2.92	3.2	0.004	0.59	1.0	0.04	16.13	0.00	1.569	13.32	2.14	4.8	95.2	0.0	-0.70	0.70	0.72	2.62	3.2	0.004	0.61	0.0	0.04	16.46	0.00	2.575	11.48	3.48	4.8	95.2	0.0	-0.54	0.39	0.70	0.72	2.77	4334	576	3	4	0	0	0	logfile
✔	9BCL	44429	2025-02-11	2024-04-09	2.9	3.20	3.03	3.2	0.005	0.76	1.0	0.07	14.78	0.00	2.149	3.19	0.31	3.3	96.7	0.0	-1.41	0.67	0.82	4.31	3.2	0.003	0.64	0.0	0.04	14.95	0.00	2.486	3.49	1.24	2.2	97.8	0.0	0.43	0.36	0.70	0.85	3.51	6719	850	8	0	18	0	0	logfile
✔	9BCS	44436	2025-02-11	2024-04-09	4.4	4.63	4.45	4.5	0.002	0.57	0.0	0.04	12.17	0.00	2.221	2.87	0.57	5.3	94.7	0.0	-0.54	0.60	0.78	—	4.5	0.003	0.67	0.0	0.04	10.68	0.00	2.257	2.66	0.00	8.9	91.1	0.0	0.20	0.52	0.62	0.79	—	5916	1038	4	0	2	0	0	logfile
✔	9BCN	44431	2025-02-11	2024-04-09	2.9	3.16	2.99	3.2	0.006	0.81	2.0	0.06	15.34	0.01	2.156	3.80	0.96	3.7	96.3	0.0	-0.99	0.72	0.85	4.67	3.2	0.002	0.64	0.0	0.04	15.76	0.00	2.570	3.03	1.28	1.9	98.1	0.0	0.76	1.14	0.68	0.83	3.62	6606	850	8	0	16	0	0	logfile
✔	9BCP	44433	2025-02-11	2024-04-09	4.1	4.20	4.12	4.2	0.006	1.10	1.0	0.05	15.68	0.01	2.251	7.55	0.35	8.7	91.3	0.0	-2.81	0.70	0.75	—	4.2	0.003	0.66	0.0	0.04	14.44	0.00	2.359	4.05	0.35	7.4	92.6	0.0	-0.90	0.58	0.70	0.76	—	4162	618	5	0	2	1	0	logfile
✔	8YZK	39696	2025-02-11	2024-04-07	3.4	2.39	3.43	1.7	0.003	0.76	0.0	0.04	18.28	0.01	2.181	13.45	1.07	8.9	91.1	0.0	-1.21	0.68	0.59	0.53	1.6	0.004	0.76	0.0	0.04	18.29	0.00	2.463	16.15	6.13	9.5	90.5	0.0	-1.02	0.90	0.69	0.63	0.38	6470	866	4	0	0	0	0	logfile
✔	9BBL	44421	2025-02-14	2024-04-06	2.5	2.33	2.51	2.6	0.011	2.11	2.0	0.10	10.02	0.01	2.489	0.19	0.00	9.7	88.9	1.4	-2.48	0.27	0.65	5.75	2.6	0.005	0.70	0.0	0.05	16.94	0.00	2.430	3.27	0.85	8.8	91.2	0.0	-3.01	2.35	0.39	0.83	5.45	10395	666	9	0	0	0	5301	logfile

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