Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9ENQ	19838	2025-02-11	2024-03-13	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5743	707	6	4	4	7	0	logfile
✔	9B1N	44085	2025-02-11	2024-03-13	3.1	3.52	3.27	3.5	0.005	0.79	0.0	0.04	11.09	0.01	2.454	0.75	0.00	1.6	98.4	0.0	-0.18	0.58	0.83	3.67	3.5	0.003	0.62	0.0	0.04	12.95	0.00	2.545	3.87	0.24	1.4	98.6	0.0	2.60	0.49	0.63	0.84	2.85	3954	515	2	0	2	0	0	logfile
✔	9B1J	44081	2025-02-11	2024-03-13	3.0	3.35	3.08	3.3	0.006	0.83	0.0	0.04	11.22	0.01	2.389	1.00	0.00	1.2	98.8	0.0	0.31	0.52	0.79	4.08	3.3	0.003	0.61	0.0	0.04	14.15	0.00	2.520	4.25	1.68	2.1	97.9	0.0	2.26	0.78	0.54	0.79	2.77	3953	515	2	0	3	0	0	logfile
✔	8Yo1	39433	2025-02-11	2024-03-12	3.55	3.65	3.49	3.8	0.006	0.81	0.0	0.05	16.11	0.00	2.117	13.57	0.46	3.9	96.1	0.0	-0.33	0.55	0.67	1.75	3.8	0.004	0.63	0.0	0.05	16.11	0.00	2.386	10.89	3.06	3.9	96.1	0.0	-0.27	0.39	0.60	0.69	1.50	5969	746	4	0	3	0	0	logfile
✔	9ENC	19831	2025-02-11	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.003	0.49	0.0	0.03	21.57	0.00	2.485	3.18	1.20	4.5	95.5	0.0	0.36	0.98	0.88	0.87	1.81	6249	566	3	75	0	0	0	logfile
✔	8Yo5	39436	2025-02-14	2024-03-12	3.93	4.14	3.96	4.0	0.003	0.63	0.0	0.04	18.80	0.00	2.130	13.20	0.54	5.6	94.4	0.0	-1.41	0.81	0.81	0.90	4.0	0.003	0.66	0.0	0.04	19.29	0.00	2.443	11.51	3.97	5.5	94.5	0.0	-1.08	0.40	0.81	0.82	0.71	10342	1284	4	0	0	0	0	logfile
✔	9ENE	19832	2025-02-12	2024-03-12	3.15	3.87	3.19	3.4	0.004	0.64	0.0	0.06	22.56	0.01	2.233	7.49	1.04	5.9	94.1	0.0	-0.77	0.89	0.87	2.75	3.4	0.003	0.62	0.0	0.06	22.25	0.00	2.250	3.45	2.77	6.7	93.3	0.0	-0.76	0.25	0.89	0.87	2.12	8484	658	4	146	0	0	0	logfile
✔	9ENF	19833	2025-02-12	2024-03-12	2.97	4.02	3.10	3.1	0.003	0.61	0.0	0.04	24.22	0.00	2.114	15.41	0.00	7.6	92.4	0.0	-1.68	0.78	0.64	1.13	3.1	0.003	0.67	0.0	0.04	24.31	0.00	2.101	12.23	1.50	6.3	93.7	0.0	-2.10	0.99	0.78	0.66	0.69	8235	530	4	182	0	0	0	logfile
✔	9B0L	44046	2025-02-12	2024-03-12	2.99	3.13	2.98	3.1	0.004	0.58	0.0	0.04	21.94	0.00	1.888	7.55	0.23	3.7	96.3	0.0	1.24	0.64	0.66	1.96	3.1	0.004	0.59	0.0	0.04	22.36	0.00	2.078	10.62	1.83	3.0	97.0	0.0	0.69	1.12	0.78	0.80	2.38	7051	466	6	155	2	0	0	logfile
✔	9ENB	19830	2025-02-12	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.15	0.00	2.104	3.28	0.18	4.5	95.5	0.0	0.54	0.87	0.85	0.87	3.93	8264	636	6	144	6	0	0	logfile
✔	8YN5	39415	2025-02-13	2024-03-10	2.7	2.85	2.67	2.8	0.002	0.53	0.0	0.06	9.60	0.00	2.209	4.33	0.42	1.6	98.4	0.0	1.27	0.71	0.85	4.97	2.8	0.003	0.56	0.0	0.04	13.44	0.00	2.534	5.38	1.67	1.9	98.1	0.0	1.75	1.17	0.72	0.86	3.63	9047	1141	6	0	6	0	0	logfile
✔	8YN2	39412	2025-02-13	2024-03-10	2.66	2.92	2.71	2.9	0.003	0.56	0.0	0.06	9.78	0.00	2.180	4.42	0.64	1.5	98.5	0.0	1.29	0.71	0.85	4.63	2.9	0.002	0.53	0.0	0.04	13.92	0.00	2.529	4.54	1.91	2.2	97.8	0.0	2.16	0.49	0.71	0.84	3.40	8979	1131	6	0	6	0	0	logfile
✔	8YN3	39413	2025-02-12	2024-03-10	2.56	2.65	2.55	2.7	0.003	0.46	0.0	0.05	9.76	0.00	2.248	3.92	0.79	1.4	98.6	0.0	1.26	0.72	0.86	4.65	2.7	0.002	0.50	0.0	0.04	14.19	0.00	2.459	4.22	1.81	2.1	97.9	0.0	1.79	0.40	0.71	0.86	3.53	8201	1042	6	0	2	0	0	logfile
✔	8YN9	39419	2025-02-13	2024-03-10	2.3	2.56	2.39	2.5	0.004	0.63	0.0	0.06	10.63	0.00	2.237	4.32	0.73	1.5	98.5	0.0	1.12	0.70	0.84	5.10	2.6	0.002	0.51	0.0	0.04	13.41	0.00	2.524	5.26	1.57	2.2	97.8	0.0	1.68	0.38	0.71	0.85	4.29	9048	1130	6	0	8	2	0	logfile
✔	8YN4	39414	2025-02-13	2024-03-10	2.97	3.15	2.94	3.1	0.002	0.40	0.0	0.04	8.47	0.00	2.276	4.44	0.33	1.1	98.9	0.0	1.49	0.67	0.81	3.52	3.1	0.005	0.64	0.0	0.04	14.59	0.00	2.475	7.13	3.51	2.3	97.7	0.0	1.53	1.24	0.68	0.82	3.29	8661	1127	6	0	2	0	0	logfile
✔	8YMQ	39403	2025-02-14	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.004	0.70	0.0	0.04	18.52	0.01	2.455	7.16	4.32	6.1	93.9	0.0	0.75	1.21	0.61	0.87	2.83	10524	1302	4	0	4	0	0	logfile
✔	8YMP	39402	2025-02-14	2024-03-09	2.6	3.14	2.77	3.2	0.008	1.42	12.0	0.09	25.41	0.01	2.057	14.00	37.57	10.6	87.2	2.2	-3.93	0.45	0.50	1.19	3.1	0.003	0.85	0.0	0.04	18.76	0.01	2.438	12.55	3.23	6.1	93.9	0.0	0.26	1.91	0.52	0.72	2.83	9570	1184	4	0	2	0	0	logfile
✔	8YMK	39396	2025-02-10	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.14	0.0	0.06	13.52	0.00	2.612	12.37	4.51	11.2	87.5	1.3	-1.02	1.84	0.60	0.63	-0.04	2744	452	2	0	0	0	0	logfile
✔	9EME	19818	2025-02-11	2024-03-08	2.92	3.09	2.69	3.1	0.015	2.12	0.0	0.12	14.21	0.01	2.019	0.00	0.00	0.0	100.0	0.0	-4.40	0.34	0.61	5.02	3.1	0.003	0.62	0.0	0.04	15.93	0.00	2.500	3.86	1.13	5.5	94.5	0.0	-3.06	1.19	0.49	0.82	4.97	4140	552	6	0	0	0	0	logfile
✔	9AYB	43984	2025-02-11	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.002	0.51	0.0	0.04	14.11	0.00	2.617	3.42	1.70	1.4	98.6	0.0	1.88	0.32	0.43	0.78	2.01	3347	428	1	0	0	0	0	logfile

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