Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EM9	19814	2025-02-12	2024-03-07	3.76	4.06	3.82	4.0	0.004	0.75	0.0	0.04	14.92	0.01	1.853	3.14	0.00	5.1	94.9	0.0	-0.71	0.80	0.71	2.12	3.9	0.003	0.76	0.0	0.04	15.65	0.00	1.889	9.23	2.15	2.6	97.4	0.0	0.49	1.46	0.84	0.77	1.85	8182	1024	4	0	4	0	0	logfile
✔	9AXC	43932	2025-02-13	2024-03-06	4.16	3.88	4.03	3.8	0.005	1.00	0.0	0.06	13.78	0.01	2.243	5.98	0.21	4.2	95.6	0.2	-1.06	0.72	0.77	—	3.8	0.003	0.68	0.0	0.05	13.86	0.00	2.444	9.49	0.00	3.5	96.4	0.1	0.39	0.63	0.73	0.78	—	8677	1079	6	0	2	0	0	logfile
✔	8S86	19798	2025-02-11	2024-03-05	2.8	3.06	2.71	3.0	0.008	1.18	2.0	0.07	13.44	0.01	2.292	8.93	2.24	6.7	93.3	0.0	-2.43	0.56	0.62	3.43	3.0	0.004	0.72	0.0	0.05	15.81	0.00	2.461	14.74	2.09	4.0	96.0	0.0	-0.13	1.20	0.61	0.65	2.32	6177	785	2	0	0	0	0	logfile
✔	8YKW	39374	2025-02-13	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.004	0.61	0.0	0.04	15.73	0.00	2.457	4.81	2.37	2.4	97.6	0.0	1.63	0.91	0.62	0.86	3.06	8718	1124	6	0	1	0	0	logfile
✔	8YKV	39373	2025-02-13	2024-03-05	2.48	2.87	2.63	2.8	0.004	0.63	0.0	0.04	15.42	0.00	1.997	2.62	0.54	1.8	98.2	0.0	1.66	0.63	0.86	4.58	2.8	0.003	0.57	0.0	0.04	16.37	0.00	2.586	5.53	2.15	2.1	97.9	0.0	1.56	0.90	0.61	0.86	4.24	8665	1110	6	0	1	0	0	logfile
✔	8YKX	39375	2025-02-13	2024-03-05	2.69	3.09	2.85	3.0	0.004	0.61	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.003	0.57	0.0	0.04	15.48	0.00	2.590	5.09	1.50	1.9	98.1	0.0	1.58	0.44	0.60	0.84	4.03	8710	1121	6	0	1	0	0	logfile
✔	8YJY	39353	2025-02-11	2024-03-03	3.3	3.57	3.37	3.6	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.68	0.0	0.04	17.92	0.01	2.493	9.02	2.42	4.8	95.2	0.0	1.55	0.86	0.66	0.74	1.42	4254	530	2	0	0	0	0	logfile
✔	8YK0	39356	2025-02-14	2024-03-03	2.4	3.35	2.51	3.1	0.008	1.30	0.0	0.08	19.60	0.01	2.029	16.32	0.10	4.6	95.4	0.0	0.09	0.68	0.78	2.96	3.1	0.005	0.83	0.0	0.05	17.78	0.01	2.469	10.08	2.23	3.7	96.3	0.0	1.13	0.57	0.68	0.83	2.62	9831	1232	7	0	15	0	0	logfile
✔	8YJW	39352	2025-02-14	2024-03-03	3.55	2.85	3.51	3.5	0.006	1.05	0.0	0.06	20.20	0.01	2.288	5.58	0.00	4.4	95.6	0.0	-3.20	0.72	0.77	2.33	3.5	0.004	0.66	0.0	0.04	21.01	0.00	2.372	12.60	2.58	4.3	95.7	0.0	-0.93	0.51	0.73	0.79	2.24	9946	1116	8	63	0	0	0	logfile
✔	9AVi	43902	2025-02-12	2024-03-03	3.02	3.96	3.03	3.7	0.013	1.94	0.0	0.08	14.20	0.01	2.430	9.05	6.29	7.9	92.1	0.0	-5.11	0.80	0.89	2.43	3.7	0.003	0.63	0.0	0.03	15.02	0.00	2.573	4.79	2.17	0.9	99.1	0.0	4.54	0.68	0.76	0.85	1.45	8370	1080	5	0	0	0	0	logfile
✔	8YJV	39351	2025-02-14	2024-03-03	3.51	2.76	3.49	3.5	0.007	1.08	0.0	0.06	20.74	0.01	2.317	5.90	0.10	5.0	95.0	0.0	-3.60	0.71	0.75	2.39	3.5	0.003	0.61	0.0	0.04	21.34	0.00	2.550	11.64	1.77	3.0	97.0	0.0	-1.48	0.47	0.72	0.76	1.88	9938	1111	8	65	0	0	0	logfile
✔	8YJS	39348	2025-02-14	2024-03-02	3.55	3.39	3.54	3.5	0.006	1.03	0.0	0.06	19.68	0.01	2.347	5.87	0.00	5.3	94.7	0.0	-3.62	0.78	0.79	2.45	3.6	0.004	0.63	0.0	0.04	20.53	0.00	2.469	11.85	1.14	3.8	96.2	0.0	-1.00	0.49	0.79	0.81	2.33	9880	1111	8	62	0	0	0	logfile
✔	8YJQ	39346	2025-02-14	2024-03-02	3.51	3.25	3.48	3.6	0.005	0.97	0.0	0.05	19.57	0.01	2.366	5.25	0.00	4.4	95.6	0.0	-3.80	0.79	0.79	2.19	3.6	0.003	0.60	0.0	0.04	20.49	0.00	2.472	12.01	1.96	2.9	97.1	0.0	-1.06	0.99	0.80	0.81	2.59	9856	1115	8	59	0	0	0	logfile
✔	8YJP	39345	2025-02-11	2024-03-02	3.09	2.27	3.09	2.1	0.009	1.46	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.63	0.0	0.04	17.66	0.00	2.454	9.84	1.84	3.2	96.8	0.0	2.58	1.01	0.75	0.75	1.97	4946	596	4	0	13	0	0	logfile
✔	8YJU	39350	2025-02-14	2024-03-02	3.78	3.49	3.71	3.5	0.005	1.03	0.0	0.06	19.79	0.01	2.324	5.53	0.00	5.1	94.9	0.0	-3.41	0.79	0.77	1.99	3.5	0.005	0.71	0.0	0.05	20.95	0.00	2.395	14.79	2.28	4.9	95.1	0.0	-1.18	0.52	0.82	0.79	2.16	9939	1111	8	65	0	0	0	logfile
✔	8YJL	39344	2025-02-14	2024-03-02	3.51	3.46	3.50	3.5	0.005	1.00	0.0	0.06	19.38	0.01	2.339	5.77	0.00	3.7	96.3	0.0	-2.81	0.77	0.79	2.64	3.5	0.004	0.66	0.0	0.04	20.62	0.00	2.374	13.42	2.79	3.5	96.5	0.0	-1.19	0.94	0.77	0.81	2.64	9853	1115	8	59	0	0	0	logfile
✔	8YJR	39347	2025-02-14	2024-03-02	3.51	3.58	3.59	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.7	0.005	0.94	0.0	0.04	21.30	0.00	2.381	13.11	1.66	4.7	95.3	0.0	-1.01	0.50	0.83	0.82	2.53	9962	1113	8	65	0	0	0	logfile
✔	8YJH	39342	2025-02-14	2024-03-01	3.68	3.64	3.65	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.003	0.64	0.0	0.04	19.75	0.00	2.493	11.71	1.86	3.4	96.6	0.0	-1.10	0.47	0.81	0.81	1.76	9735	1115	8	53	0	0	0	logfile
✔	8Yi7	39311	2025-02-11	2024-02-29	3.57	3.79	3.54	3.8	0.013	1.60	4.0	0.11	13.65	0.00	2.122	9.97	1.75	4.2	95.8	0.0	0.53	0.67	0.77	2.41	3.7	0.003	0.62	0.0	0.04	14.96	0.00	2.513	5.80	2.23	2.9	97.1	0.0	0.27	1.48	0.71	0.84	2.00	5586	697	6	0	4	0	0	logfile
✔	9AUF	43878	2025-02-12	2024-02-29	2.73	2.96	2.74	3.0	0.005	0.73	0.0	0.05	21.70	0.01	2.331	3.00	0.57	2.9	97.1	0.0	-0.18	0.72	0.88	5.39	3.0	0.006	0.64	0.0	0.05	22.02	0.01	2.244	4.98	3.69	3.4	96.6	0.0	0.96	0.87	0.72	0.88	5.00	7251	389	5	192	0	0	0	logfile

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