Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8S7E	19768	2025-02-12	2024-02-29	3.4	3.72	3.45	3.6	0.003	0.55	0.0	0.04	18.59	0.00	1.902	20.70	0.25	7.8	92.2	0.0	-1.51	0.59	0.55	0.28	3.6	0.003	0.60	0.0	0.05	18.95	0.00	2.378	13.21	2.96	5.6	94.4	0.0	-1.24	0.47	0.58	0.56	-0.12	7312	466	2	0	0	0	3648	logfile
✔	9AUF	43878	2025-02-12	2024-02-29	2.73	2.96	2.74	3.0	0.005	0.73	0.0	0.05	21.70	0.01	2.331	3.00	0.57	2.9	97.1	0.0	-0.18	0.72	0.88	5.39	3.0	0.006	0.64	0.0	0.05	22.02	0.01	2.244	4.98	3.69	3.4	96.6	0.0	0.96	0.87	0.72	0.88	5.00	7251	389	5	192	0	0	0	logfile
✔	8YHU	39301	2025-02-11	2024-02-28	2.88	2.30	2.92	2.1	0.004	0.72	0.0	0.05	15.50	0.00	2.248	11.29	0.30	13.0	86.8	0.1	-3.42	0.69	0.66	2.73	2.1	0.003	0.69	0.0	0.05	15.70	0.00	2.500	9.37	2.40	12.3	87.7	0.0	-3.36	0.34	0.71	0.69	1.83	5990	719	8	0	15	0	0	logfile
✔	8YHo	39290	2025-02-11	2024-02-28	2.8	3.60	2.93	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.83	0.0	0.04	15.18	0.00	2.490	11.58	2.12	7.1	92.9	0.0	-0.35	1.34	0.75	0.79	2.10	6206	759	3	0	0	0	0	logfile
✔	8YHT	39300	2025-02-11	2024-02-28	2.88	4.04	3.07	3.7	0.004	0.70	0.0	0.05	15.46	0.00	1.995	11.47	0.46	12.1	87.8	0.1	-3.01	0.76	0.63	1.79	3.8	0.003	0.87	0.0	0.06	16.30	0.00	2.415	11.30	2.76	10.5	89.5	0.0	-2.91	1.14	0.77	0.68	2.26	5845	703	7	0	14	0	0	logfile
✔	9AUC	43877	2025-02-14	2024-02-28	2.4	2.09	2.10	2.6	0.003	0.48	3.0	0.04	13.24	0.00	2.239	4.66	0.91	0.9	99.1	0.0	-3.20	0.64	0.80	3.68	2.5	0.003	0.57	0.0	0.04	16.38	0.00	2.483	4.37	1.28	2.5	97.5	0.0	1.02	0.64	0.64	0.83	3.50	10369	1275	11	0	10	16	0	logfile
✔	8YH0	39278	2025-02-13	2024-02-27	2.86	3.63	—	3.3	0.004	0.66	0.0	0.06	13.13	0.00	2.070	8.58	0.00	3.7	96.2	0.1	-0.02	0.68	0.71	1.98	3.3	0.004	0.90	0.0	0.05	15.95	0.01	2.484	12.44	2.41	4.5	95.5	0.0	-0.10	1.59	0.71	0.79	1.59	8693	1103	6	0	1	0	0	logfile
✔	8YH6	39282	2025-02-13	2024-02-27	3.62	4.12	—	3.7	0.012	1.43	0.0	0.09	14.43	0.03	2.215	12.85	0.94	4.9	95.0	0.1	-2.37	0.57	0.50	0.66	3.8	0.004	0.84	0.0	0.05	16.44	0.00	2.467	17.46	3.15	4.7	95.3	0.0	-0.24	1.51	0.64	0.65	0.44	8706	1104	6	0	1	0	0	logfile
✔	8YH2	39279	2025-02-13	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.003	0.81	0.0	0.05	16.04	0.00	2.460	14.87	2.52	4.1	95.9	0.1	-0.08	1.56	0.65	0.71	0.57	8690	1103	6	0	1	0	0	logfile
✔	8YH3	39280	2025-02-13	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.86	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.81	0.0	0.04	16.09	0.00	2.410	12.79	2.41	4.3	95.7	0.0	0.32	1.85	0.67	0.73	0.54	8691	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-02-13	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	1.09	0.0	0.05	16.27	0.00	1.852	15.78	2.94	4.5	95.4	0.1	-0.18	1.16	0.64	0.66	0.35	8695	1103	6	0	1	0	0	logfile
✔	9ASo	43821	2025-02-13	2024-02-26	2.9	3.56	2.94	3.1	0.003	0.60	0.0	0.05	17.62	0.00	2.281	3.38	1.04	1.6	98.4	0.0	1.28	0.80	0.66	2.99	3.1	0.003	0.54	0.0	0.04	17.49	0.00	2.370	3.05	0.58	2.2	97.8	0.0	1.56	0.90	0.88	0.89	2.64	9426	966	6	71	4	2	0	logfile
✔	9AST	43825	2025-02-13	2024-02-26	3.07	2.24	3.08	2.1	0.004	0.70	0.0	0.05	15.90	0.00	0.114	6.75	2.16	2.4	97.2	0.4	0.39	0.74	0.77	2.51	2.1	0.003	0.53	0.0	0.04	16.02	0.00	2.518	4.14	3.80	2.4	97.5	0.1	1.13	0.31	0.74	0.78	2.26	8876	1134	6	0	0	0	0	logfile
✔	8S5U	19750	2025-02-11	2024-02-26	3.28	3.39	3.21	3.3	0.009	0.71	0.0	0.04	15.77	0.01	2.338	5.38	0.47	3.6	96.4	0.0	-0.65	0.65	0.83	3.31	3.3	0.005	0.61	0.0	0.04	16.50	0.00	2.594	4.25	1.89	2.6	97.4	0.0	1.53	0.95	0.70	0.87	2.96	3998	502	3	0	2	0	0	logfile
✔	8S61	19754	2025-02-11	2024-02-26	3.53	3.76	3.50	3.7	0.008	0.63	0.0	0.04	16.57	0.00	1.994	5.65	0.00	6.7	93.3	0.0	-1.96	0.61	0.83	2.65	3.7	0.002	0.57	0.0	0.04	17.11	0.00	2.597	4.77	3.80	5.2	94.8	0.0	-0.05	4.16	0.69	0.84	2.06	3990	502	3	0	1	0	0	logfile
✔	8S5W	19752	2025-02-11	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.004	0.62	0.0	0.04	18.02	0.00	2.584	5.37	6.18	4.0	96.0	0.0	0.69	0.89	0.61	0.85	2.62	4009	502	3	0	1	0	0	logfile
✔	8YFT	39229	2025-02-11	2024-02-25	3.16	4.17	3.25	3.6	0.004	0.63	2.0	0.05	13.01	0.01	2.261	4.81	0.58	4.1	95.6	0.3	-0.17	0.81	0.66	1.68	3.8	0.003	0.63	0.0	0.04	14.80	0.00	2.499	6.23	1.74	3.6	96.3	0.1	0.45	1.74	0.87	0.79	1.91	6508	783	7	0	10	0	0	logfile
✔	8YFW	39231	2025-02-12	2024-02-25	3.65	3.82	3.63	3.7	0.004	0.74	0.0	0.04	15.86	0.01	2.152	13.17	0.28	4.7	95.0	0.3	1.70	0.56	0.70	1.25	3.7	0.003	0.67	0.0	0.04	16.25	0.00	2.489	10.13	3.13	3.7	96.0	0.3	2.70	1.19	0.56	0.71	0.98	8419	1161	2	0	0	0	0	logfile
✔	8YFU	39230	2025-02-13	2024-02-25	4.59	4.78	4.51	4.6	0.003	0.67	0.0	0.04	12.85	0.00	2.081	12.72	0.00	5.3	94.4	0.3	1.47	0.55	0.70	—	4.6	0.003	0.67	0.0	0.04	12.82	0.00	2.368	11.40	0.00	5.5	94.3	0.3	1.85	0.50	0.55	0.71	—	8419	1161	2	0	0	0	0	logfile
✔	9ASD	43813	2025-02-10	2024-02-25	3.3	3.51	3.27	3.6	0.011	1.51	4.0	0.09	11.03	0.02	2.348	2.18	1.35	4.4	95.6	0.0	0.14	0.67	0.76	4.80	3.5	0.004	0.75	0.0	0.05	13.66	0.00	2.603	4.36	1.79	3.7	96.1	0.2	-0.01	1.18	0.70	0.82	4.04	3013	419	4	0	2	0	0	logfile

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