Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YFT	39229	2025-02-11	2024-02-25	3.16	4.17	3.25	3.6	0.004	0.63	2.0	0.05	13.01	0.01	2.261	4.81	0.58	4.1	95.6	0.3	-0.17	0.81	0.66	1.68	3.8	0.003	0.63	0.0	0.04	14.80	0.00	2.499	6.23	1.74	3.6	96.3	0.1	0.45	1.74	0.87	0.79	1.91	6508	783	7	0	10	0	0	logfile
✔	8YF4	39210	2025-02-11	2024-02-24	3.41	3.59	3.35	3.6	0.003	0.55	0.0	0.04	17.00	0.00	2.064	7.25	0.86	5.2	94.8	0.0	0.92	0.56	0.73	1.36	3.6	0.003	0.58	0.0	0.04	17.23	0.00	2.507	5.97	4.43	5.2	94.8	0.0	1.66	1.59	0.55	0.73	1.74	6620	786	4	0	2	0	0	logfile
✔	8YFD	39220	2025-02-11	2024-02-24	3.57	3.79	3.57	3.8	0.003	0.68	0.0	0.04	17.76	0.00	2.195	9.97	0.57	6.1	93.5	0.4	0.20	0.56	0.77	1.34	3.8	0.003	0.63	0.0	0.04	17.95	0.00	2.521	7.61	5.11	6.3	93.4	0.3	0.94	1.17	0.56	0.77	1.22	6588	792	2	0	0	0	0	logfile
✔	8YEX	39204	2025-02-11	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.67	0.0	0.04	17.28	0.00	2.523	10.89	2.44	5.3	94.7	0.0	1.45	0.45	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8YF0	39206	2025-02-13	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.67	0.0	0.04	16.76	0.00	2.615	12.10	2.16	2.3	97.7	0.0	1.16	0.42	0.54	0.65	0.81	9181	1159	2	0	0	0	0	logfile
✔	8YET	39203	2025-02-14	2024-02-23	4.16	4.38	4.16	4.3	0.003	0.74	0.0	0.04	17.60	0.00	2.213	8.71	0.09	5.8	94.1	0.1	1.34	0.62	0.75	—	4.3	0.003	0.64	0.0	0.04	16.35	0.00	2.375	8.01	0.00	5.3	94.5	0.2	1.31	1.62	0.62	0.75	—	10102	1206	3	0	2	0	0	logfile
✔	8YF1	39207	2025-02-13	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.58	0.0	0.04	16.65	0.00	2.526	9.85	2.07	2.4	97.6	0.0	1.53	0.29	0.42	0.63	0.48	9187	1156	4	0	2	0	0	logfile
✔	8S4U	19716	2025-02-11	2024-02-22	3.09	3.17	2.95	3.1	0.006	0.65	1.0	0.05	14.85	0.01	2.272	7.16	0.24	4.2	95.8	0.0	-0.73	0.61	0.80	2.33	3.1	0.004	0.63	0.0	0.04	15.66	0.00	2.567	5.90	4.02	3.0	97.0	0.0	1.25	0.31	0.66	0.84	2.47	3980	502	3	0	1	0	0	logfile
✔	8W2S	43757	2025-02-11	2024-02-21	3.4	3.65	3.41	3.5	0.004	0.89	0.0	0.05	20.85	0.01	2.289	7.86	0.00	4.8	95.2	0.0	-1.36	0.79	0.81	3.39	3.5	0.004	1.04	0.0	0.04	20.75	0.00	1.847	10.28	2.05	5.7	94.3	0.0	0.78	0.53	0.80	0.83	2.19	5688	339	2	137	0	0	0	logfile
✔	8W35	43762	2025-02-10	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.002	0.47	0.0	0.03	20.23	0.00	2.570	2.90	1.00	2.2	97.8	0.0	1.54	0.39	0.64	0.75	2.79	2611	234	3	34	0	0	0	logfile
✔	8W2Z	43760	2025-02-12	2024-02-21	3.37	3.60	3.42	3.5	0.005	0.87	0.0	0.05	22.00	0.01	2.287	5.82	1.21	4.3	95.7	0.0	-1.66	0.79	0.84	1.58	3.5	0.003	0.59	0.0	0.04	22.06	0.00	2.510	9.72	2.42	6.0	94.0	0.0	-0.26	2.53	0.79	0.85	2.22	7676	525	4	170	0	0	0	logfile
✔	8YE3	39188	2025-02-14	2024-02-21	3.4	2.34	3.25	2.1	0.003	0.53	0.0	0.04	17.69	0.00	2.028	9.43	0.89	3.6	96.4	0.0	-0.31	0.71	0.75	2.40	2.2	0.005	0.65	0.0	0.05	18.35	0.00	2.501	9.23	5.66	4.7	95.3	0.0	-0.25	1.22	0.79	0.81	2.00	10491	1356	3	0	0	0	0	logfile
✔	8W22	43737	2025-02-11	2024-02-19	4.0	4.25	3.95	4.2	0.008	1.27	0.0	0.06	8.00	0.00	2.497	0.92	0.00	2.8	96.8	0.3	0.30	0.71	0.74	—	4.2	0.003	0.64	0.0	0.04	12.12	0.00	2.621	2.90	5.56	3.3	96.7	0.0	0.31	0.74	0.73	0.78	—	3750	629	3	0	0	0	0	logfile
✔	8YC0	39128	2025-02-11	2024-02-17	4.12	4.24	3.86	4.2	0.004	0.77	0.0	0.04	17.51	0.00	2.114	14.18	0.58	7.6	92.4	0.0	-0.95	0.50	0.65	—	4.2	0.003	0.76	0.0	0.04	13.94	0.00	2.465	10.53	0.00	7.4	92.6	0.0	-0.63	1.35	0.60	0.71	—	4635	583	9	0	1	0	0	logfile
✔	8YBK	39120	2025-02-14	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.57	0.0	0.03	27.80	0.00	2.539	4.85	2.41	1.6	98.4	0.0	2.87	1.11	0.79	0.83	2.65	10261	708	10	228	0	0	0	logfile
✔	8W0R	43712	2025-02-11	2024-02-14	2.8	2.89	2.83	2.9	0.005	0.71	0.0	0.11	12.17	0.01	2.073	0.57	0.00	2.4	97.6	0.0	0.55	0.61	0.77	3.21	2.9	0.003	0.52	0.0	0.04	14.57	0.00	2.652	5.14	1.34	1.4	98.6	0.0	2.23	1.74	0.60	0.78	2.90	3556	426	4	0	2	0	0	logfile
✔	8S0T	19628	2025-02-14	2024-02-14	2.3	2.16	2.46	2.3	0.013	2.14	4.0	0.14	16.21	0.02	2.480	4.30	3.24	3.6	95.8	0.6	-2.68	0.56	0.73	4.61	2.5	0.004	0.65	0.0	0.04	16.77	0.00	2.446	7.43	0.90	2.8	97.1	0.2	0.25	1.05	0.57	0.75	3.61	10665	630	7	0	1	145	5404	logfile
✔	8W0A	43706	2025-02-14	2024-02-13	3.2	3.72	3.22	3.6	0.003	0.59	0.0	0.04	19.61	0.00	1.561	10.62	0.09	8.1	91.9	0.0	-1.76	0.72	0.71	1.67	3.6	0.003	0.90	1.0	0.04	19.68	0.00	2.072	8.90	4.81	7.3	92.7	0.0	-1.29	0.46	0.70	0.72	0.96	10216	1272	4	14	0	0	0	logfile
✔	8YBE	39117	2025-02-10	2024-02-13	2.3	2.50	2.34	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.005	0.71	0.0	0.04	16.53	0.00	2.598	11.36	1.00	2.2	97.8	0.0	1.31	0.32	0.68	0.83	5.54	3110	370	3	0	2	197	0	logfile
✔	8RZL	19608	2025-02-13	2024-02-12	2.65	3.69	2.75	3.2	0.012	1.57	0.0	0.10	15.37	0.01	2.347	1.93	3.21	5.0	95.0	0.0	0.97	0.89	0.92	6.37	3.2	0.003	0.66	0.0	0.04	11.36	0.00	2.493	3.57	2.18	2.7	97.3	0.0	1.24	0.47	0.87	0.90	5.10	8895	915	35	0	155	0	0	logfile

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