Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RZ8	19606	2025-02-13	2024-02-12	3.06	2.38	3.08	3.0	0.007	1.19	0.0	0.08	16.61	0.00	1.729	17.03	2.74	6.1	93.9	0.0	-1.06	0.77	0.77	1.63	3.0	0.005	0.68	0.0	0.04	17.70	0.00	1.793	13.21	3.23	4.2	95.8	0.0	-0.22	0.52	0.75	0.74	1.67	9255	1160	4	0	4	0	0	logfile
✔	8VZo	43684	2025-02-11	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.003	0.57	0.0	0.04	15.16	0.00	2.615	4.69	1.74	2.1	97.9	0.0	2.40	0.51	0.67	0.88	3.65	4796	615	4	0	1	0	0	logfile
✔	8VZN	43683	2025-02-11	2024-02-12	2.77	2.94	2.79	2.9	0.015	1.53	0.0	0.08	15.04	0.04	2.330	3.53	2.81	4.9	95.1	0.0	-3.34	0.61	0.85	3.75	2.9	0.003	0.61	0.0	0.04	15.32	0.00	2.532	5.14	1.20	2.0	98.0	0.0	1.83	0.97	0.61	0.87	3.71	4656	596	4	0	1	0	0	logfile
✔	8RZL	19608	2025-02-13	2024-02-12	2.65	3.69	2.75	3.2	0.012	1.57	0.0	0.10	15.37	0.01	2.347	1.93	3.21	5.0	95.0	0.0	0.97	0.89	0.92	6.37	3.2	0.003	0.66	0.0	0.04	11.36	0.00	2.493	3.57	2.18	2.7	97.3	0.0	1.24	0.47	0.87	0.90	5.10	8895	915	35	0	155	0	0	logfile
✔	8YB4	39108	2025-02-12	2024-02-11	3.1	3.56	3.21	3.4	0.004	0.62	0.0	0.04	18.65	0.02	2.205	7.05	0.33	4.6	95.4	0.0	0.26	0.68	0.74	1.67	3.4	0.002	0.56	0.0	0.04	18.29	0.00	2.444	4.60	3.31	3.5	96.4	0.1	1.24	0.91	0.69	0.83	1.71	8400	1067	5	0	2	0	0	logfile
✔	8YAA	39093	2025-02-12	2024-02-08	3.34	3.03	3.28	3.1	0.006	0.87	0.0	0.06	21.92	0.01	2.131	9.29	0.13	11.0	89.0	0.0	-4.08	0.78	0.85	3.54	3.2	0.003	0.68	0.0	0.05	15.67	0.00	2.448	5.47	1.59	6.7	93.3	0.0	-3.96	0.94	0.79	0.86	2.85	6985	844	17	0	36	0	0	logfile
✔	8VYG	43660	2025-02-10	2024-02-08	3.1	3.18	3.20	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.002	0.62	0.0	0.04	15.40	0.00	2.574	5.77	2.39	3.2	96.8	0.0	0.39	1.46	0.54	0.77	2.50	3204	416	4	0	1	0	0	logfile
✔	8VYF	43659	2025-02-11	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.004	0.61	0.0	0.05	12.24	0.00	2.563	1.90	2.59	2.6	97.4	0.0	0.78	0.52	0.68	0.88	5.09	5132	715	9	0	12	0	0	logfile
✔	8VY7	43647	2025-02-13	2024-02-07	2.68	2.20	2.71	2.0	0.005	0.71	0.0	0.05	14.10	0.00	2.245	3.71	0.00	3.5	96.5	0.0	-0.25	0.80	0.82	3.65	2.0	0.003	0.60	0.0	0.04	15.68	0.00	2.508	6.51	1.28	3.7	96.3	0.0	1.29	1.30	0.81	0.82	3.43	8811	1136	6	0	2	0	0	logfile
✔	8VY9	43650	2025-02-13	2024-02-07	2.88	2.27	2.92	2.0	0.005	0.70	0.0	0.05	14.27	0.00	2.245	3.56	0.00	4.2	95.8	0.0	-0.69	0.78	0.80	3.74	2.1	0.005	0.61	0.0	0.04	16.62	0.00	2.418	6.78	2.10	4.9	95.1	0.0	1.00	0.48	0.79	0.82	3.27	8668	1134	6	0	2	0	0	logfile
✔	8VYB	43655	2025-02-12	2024-02-07	3.37	3.91	3.30	3.7	0.008	1.05	0.0	0.07	15.54	0.01	2.344	0.00	0.00	5.4	94.6	0.0	-1.28	0.70	0.63	1.89	3.7	0.003	0.66	0.0	0.04	16.85	0.00	2.557	7.33	2.37	4.3	95.7	0.0	-0.01	1.19	0.79	0.80	2.09	7249	920	2	0	0	0	0	logfile
✔	8Y9J	39081	2025-02-14	2024-02-06	4.6	4.84	4.60	4.7	0.012	2.02	19.0	0.12	16.84	0.02	2.310	2.29	2.23	7.4	90.6	2.0	-2.49	0.43	0.72	—	4.7	0.004	0.94	0.0	0.05	15.24	0.01	2.309	17.59	0.00	8.5	91.1	0.3	-1.39	1.18	0.46	0.74	—	9770	1205	5	12	0	0	0	logfile
✔	8Y95	39070	2025-02-13	2024-02-06	3.24	3.62	3.40	3.6	0.003	0.59	0.0	0.04	11.30	0.01	1.402	11.16	4.43	5.0	95.0	0.0	-1.89	0.50	0.65	1.63	3.6	0.003	0.62	0.0	0.04	14.90	0.00	2.328	10.84	3.27	3.1	96.9	0.0	0.73	1.10	0.56	0.78	2.52	9018	1124	4	0	6	0	0	logfile
✔	8Y94	39069	2025-02-13	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.003	0.67	0.0	0.04	15.25	0.00	2.533	10.26	2.94	2.9	97.1	0.0	0.96	1.15	0.59	0.78	1.00	9032	1130	2	0	0	0	0	logfile
✔	8Y86	39035	2025-02-12	2024-02-06	2.75	3.36	2.84	3.3	0.003	0.54	0.0	0.04	15.01	0.00	2.290	2.24	1.25	1.9	98.1	0.0	1.76	0.56	0.81	2.34	3.3	0.003	0.51	0.0	0.04	15.72	0.00	2.627	2.72	1.71	2.0	98.0	0.0	2.24	0.21	0.54	0.79	2.23	8060	1028	4	0	2	0	0	logfile
✔	8Y90	39065	2025-02-13	2024-02-06	3.15	3.57	3.32	3.5	0.003	0.57	0.0	0.03	11.77	0.00	2.167	8.97	6.09	2.7	97.3	0.0	-1.83	0.50	0.63	1.25	3.5	0.003	0.69	0.0	0.04	14.90	0.00	2.328	11.35	3.68	3.6	96.4	0.0	0.53	1.19	0.59	0.78	1.34	9058	1130	3	0	3	5	0	logfile
✘	8Y91	39066	2025-02-13	2024-02-06	3.13	3.47	3.24	3.4	0.004	0.55	0.0	0.04	11.48	0.00	1.938	9.24	5.04	4.4	95.6	0.0	-1.65	0.48	0.65	1.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9072	1130	4	0	6	0	0	logfile
✘	8Y8B	39040	2025-02-12	2024-02-06	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7303	902	14	0	26	0	0	logfile
✔	8Y92	39067	2025-02-13	2024-02-06	3.29	3.68	3.39	3.6	0.003	0.64	1.0	0.04	11.67	0.00	1.954	8.79	4.73	3.1	96.9	0.0	-1.19	0.50	0.67	2.32	3.6	0.003	0.63	0.0	0.04	15.40	0.00	2.308	10.62	3.89	3.7	96.3	0.0	1.31	0.72	0.60	0.79	2.03	9078	1130	6	0	5	5	0	logfile
✘	8Y8J	39048	2025-02-11	2024-02-06	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5069	608	10	0	18	0	0	logfile

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