Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8Y8B	39040	2025-02-12	2024-02-06	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7303	902	14	0	26	0	0	logfile
✔	8Y9J	39081	2025-02-14	2024-02-06	4.6	4.84	4.60	4.7	0.012	2.02	19.0	0.12	16.84	0.02	2.310	2.29	2.23	7.4	90.6	2.0	-2.49	0.43	0.72	—	4.7	0.004	0.94	0.0	0.05	15.24	0.01	2.309	17.59	0.00	8.5	91.1	0.3	-1.39	1.18	0.46	0.74	—	9770	1205	5	12	0	0	0	logfile
✔	8Y94	39069	2025-02-13	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.003	0.67	0.0	0.04	15.25	0.00	2.533	10.26	2.94	2.9	97.1	0.0	0.96	1.15	0.59	0.78	1.00	9032	1130	2	0	0	0	0	logfile
✔	8Y84	39032	2025-02-10	2024-02-05	2.98	3.18	2.95	3.2	0.007	1.15	0.0	0.06	15.18	0.01	2.269	4.95	0.00	1.5	98.5	0.0	-1.59	0.43	0.76	2.26	3.2	0.004	0.68	0.0	0.04	16.73	0.00	2.611	6.07	1.27	1.9	98.1	0.0	2.02	0.31	0.42	0.78	1.55	2168	268	5	0	1	0	0	logfile
✘	8Y7Y	39026	2025-02-12	2024-02-05	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6860	861	13	0	27	0	0	logfile
✔	8Y85	39034	2025-02-12	2024-02-05	2.73	2.89	2.74	3.0	0.004	0.76	4.0	0.04	16.59	0.01	2.314	3.19	0.68	2.5	97.5	0.0	2.04	0.59	0.78	2.03	3.0	0.003	0.57	0.0	0.04	16.88	0.01	2.615	2.35	1.94	2.5	97.5	0.0	2.43	0.23	0.59	0.78	1.83	8116	1028	4	0	4	0	0	logfile
✔	8Y7Z	39027	2025-02-11	2024-02-05	2.57	2.82	2.60	2.9	0.004	0.66	0.0	0.04	20.76	0.00	1.958	14.35	0.33	3.7	96.3	0.0	-0.35	0.69	0.79	3.13	2.9	0.005	0.65	0.0	0.04	21.11	0.01	1.928	11.56	3.95	3.7	96.3	0.0	-0.22	0.24	0.65	0.80	3.25	6488	708	5	41	1	0	0	logfile
✔	8Y81	39029	2025-02-13	2024-02-05	2.89	3.13	2.95	3.2	0.007	1.00	0.0	0.06	16.04	0.01	2.274	5.39	0.10	3.8	96.1	0.1	-1.30	0.64	0.78	2.56	3.2	0.004	0.59	0.0	0.04	16.23	0.00	2.463	8.41	1.92	3.9	96.1	0.0	0.59	1.13	0.57	0.77	2.41	8915	1077	13	0	14	0	0	logfile
✔	8VXC	43616	2025-02-13	2024-02-04	2.93	2.24	2.94	1.9	0.003	0.51	0.0	0.04	14.76	0.00	2.206	9.15	0.00	3.2	96.8	0.0	0.25	0.75	0.72	1.60	1.9	0.004	0.65	0.0	0.04	17.44	0.01	2.542	10.81	1.90	4.0	96.0	0.0	0.23	0.60	0.75	0.73	1.77	9390	1139	3	22	0	0	0	logfile
✘	8VX4	43607	2025-02-11	2024-02-03	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3650	311	3	60	0	0	0	logfile
✔	8VXA	43615	2025-02-13	2024-02-03	2.79	2.23	2.81	1.9	0.003	0.53	0.0	0.04	15.67	0.00	2.204	10.67	0.00	3.1	96.9	0.0	0.60	0.75	0.73	2.94	1.9	0.003	0.63	0.0	0.04	18.17	0.00	2.477	10.45	3.16	2.7	97.3	0.0	0.91	0.58	0.77	0.77	2.38	9431	1139	3	24	0	0	0	logfile
✔	8Y6P	38994	2025-02-14	2024-02-03	3.9	4.26	4.01	4.1	0.004	0.90	0.0	0.05	16.87	0.01	2.064	19.68	1.34	7.1	91.8	1.1	-0.98	0.81	0.77	1.08	4.1	0.004	0.80	0.0	0.05	17.24	0.01	2.476	13.30	3.40	8.0	91.2	0.7	-0.83	2.43	0.82	0.79	0.99	9977	1228	1	0	0	0	0	logfile
✔	8Y6A	38983	2025-02-14	2024-02-02	2.72	3.72	2.80	3.2	0.004	0.73	0.0	0.06	15.69	0.01	2.212	14.67	0.48	6.5	93.0	0.5	-1.89	0.79	0.64	1.10	3.3	0.004	0.92	0.0	0.05	16.08	0.00	2.126	15.35	1.90	7.4	92.5	0.2	-1.52	0.94	0.80	0.66	1.28	9786	1206	10	0	16	0	0	logfile
✔	8RW5	19543	2025-02-11	2024-02-02	2.94	3.11	2.94	3.1	0.003	0.54	0.0	0.04	15.69	0.00	2.179	5.79	0.29	2.5	97.5	0.0	0.66	0.67	0.85	3.33	3.1	0.004	0.57	0.0	0.04	16.52	0.00	2.535	5.27	2.19	2.7	97.3	0.0	0.91	0.68	0.68	0.85	3.17	6753	872	1	0	0	0	0	logfile
✔	8Y6K	38989	2025-02-11	2024-02-02	3.94	2.95	4.01	2.0	0.006	0.97	0.0	0.05	15.52	0.01	2.136	21.47	0.33	4.8	95.2	0.0	-0.44	0.66	0.59	0.59	1.8	0.003	0.73	0.0	0.04	17.77	0.00	2.406	13.77	3.11	4.4	95.6	0.0	0.42	0.54	0.66	0.59	0.66	5872	741	2	0	3	0	0	logfile
✔	8Y6N	38992	2025-02-11	2024-02-02	3.4	3.60	3.34	3.6	0.009	1.52	14.0	0.10	18.06	0.01	2.030	20.21	9.97	14.4	81.6	4.0	-3.25	0.60	0.74	2.52	3.6	0.003	0.76	0.0	0.04	16.79	0.00	2.608	11.49	4.36	7.2	92.8	0.0	-1.58	0.53	0.59	0.73	2.37	5858	768	2	0	0	0	0	logfile
✔	8VWY	43605	2025-02-11	2024-02-02	2.78	2.94	2.88	3.1	0.006	0.58	0.0	0.04	12.58	0.00	2.133	11.76	6.10	5.2	94.8	0.0	-1.38	0.63	0.78	3.81	3.1	0.004	0.62	0.0	0.04	15.86	0.00	2.274	10.44	3.29	6.0	94.0	0.0	-0.90	0.50	0.62	0.80	2.47	6293	825	13	0	7	8	0	logfile
✔	8Y6J	38988	2025-02-11	2024-02-02	3.46	3.69	3.47	3.7	0.003	0.55	0.0	0.04	16.14	0.00	2.181	6.75	0.00	3.3	96.7	0.0	3.00	0.58	0.79	1.79	3.7	0.003	0.52	0.0	0.04	16.71	0.00	2.567	6.38	3.07	4.3	95.7	0.0	3.49	0.23	0.57	0.79	1.51	6650	850	2	0	0	0	0	logfile
✔	8Y6M	38991	2025-02-11	2024-02-02	2.91	3.15	2.93	3.2	0.006	0.70	0.0	0.05	18.43	0.01	2.065	13.26	7.32	3.3	96.7	0.0	0.60	0.50	0.70	2.60	3.2	0.003	0.59	0.0	0.04	18.23	0.00	2.579	12.51	4.42	2.2	97.8	0.0	1.44	1.07	0.50	0.69	1.85	6502	826	2	0	0	0	0	logfile
✔	8Y6L	38990	2025-02-11	2024-02-02	3.4	3.59	3.35	3.6	0.006	1.02	8.0	0.06	17.31	0.01	1.397	18.84	3.53	10.0	88.5	1.5	-1.61	0.58	0.74	2.10	3.6	0.003	0.82	0.0	0.04	17.83	0.00	2.394	13.50	6.62	8.4	91.4	0.2	-0.26	0.54	0.57	0.74	1.25	6256	818	2	0	0	0	0	logfile

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