Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y5Z	38960	2025-02-12	2024-02-01	3.35	3.68	3.41	3.7	0.003	0.61	0.0	0.04	13.09	0.01	2.201	8.65	0.00	4.7	95.3	0.0	1.63	0.65	0.84	2.63	3.7	0.002	0.57	0.0	0.04	15.38	0.01	2.282	6.66	1.62	4.8	95.2	0.0	1.85	0.92	0.65	0.85	1.98	7918	1016	4	0	4	0	0	logfile
✔	8Y5X	38955	2025-02-12	2024-02-01	3.25	3.48	3.25	3.5	0.003	0.64	0.0	0.04	12.54	0.01	2.201	8.63	0.00	3.4	96.4	0.2	1.40	0.64	0.83	2.94	3.4	0.004	0.64	0.0	0.04	14.19	0.01	2.189	9.30	1.82	3.9	96.1	0.0	1.91	0.38	0.65	0.85	2.40	8032	1024	4	0	4	0	0	logfile
✔	8Y5U	38953	2025-02-12	2024-02-01	3.04	3.34	3.12	3.4	0.004	0.62	0.0	0.04	13.06	0.01	2.215	8.29	0.12	3.7	96.2	0.1	1.88	0.68	0.85	2.62	3.4	0.003	0.60	0.0	0.04	15.04	0.01	2.325	7.55	1.84	3.1	96.8	0.1	2.02	0.36	0.60	0.85	2.53	7961	1016	4	0	5	0	0	logfile
✔	8Y5Y	38959	2025-02-12	2024-02-01	3.3	3.56	3.33	3.6	0.004	0.68	0.0	0.05	13.07	0.01	2.298	9.39	0.46	4.2	95.2	0.6	-0.04	0.65	0.81	3.00	3.6	0.003	0.75	0.0	0.05	15.17	0.01	2.598	11.32	3.59	4.0	95.6	0.4	0.38	0.49	0.64	0.84	1.80	7918	1012	4	0	2	0	0	logfile
✔	8Y5W	38954	2025-02-12	2024-02-01	2.73	2.95	2.75	3.0	0.003	0.64	0.0	0.04	11.21	0.00	2.168	6.39	0.00	4.8	95.2	0.0	0.63	0.71	0.87	3.73	3.0	0.003	0.62	0.0	0.04	13.96	0.01	2.207	7.25	1.60	4.9	95.0	0.1	1.33	0.91	0.66	0.89	3.30	8015	1023	4	0	6	0	0	logfile
✔	8Y62	38964	2025-02-12	2024-02-01	3.2	2.90	3.23	3.3	0.006	0.73	0.0	0.05	13.81	0.00	2.202	9.41	0.13	5.0	95.0	0.0	-1.49	0.79	0.84	3.17	3.4	0.003	0.65	0.0	0.04	15.41	0.00	2.491	5.78	2.74	3.2	96.8	0.0	0.09	0.38	0.80	0.85	2.32	8160	1128	6	0	1	0	0	logfile
✔	8Y65	38966	2025-02-11	2024-02-01	3.51	3.77	3.42	3.8	0.004	0.73	0.0	0.04	13.65	0.01	2.231	9.02	0.27	3.7	96.3	0.0	1.81	0.43	0.55	0.74	3.8	0.002	0.57	0.0	0.04	15.35	0.00	2.602	9.30	2.13	3.4	96.6	0.0	1.85	0.36	0.45	0.57	0.74	3565	467	2	0	1	0	0	logfile
✔	8Y66	38968	2025-02-11	2024-02-01	3.28	3.92	3.35	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.003	0.62	0.0	0.04	16.22	0.00	2.507	7.51	4.17	2.4	97.6	0.0	1.82	0.35	0.47	0.70	1.02	3606	467	2	0	1	0	0	logfile
✔	8Y5G	38934	2025-02-14	2024-01-31	3.0	2.33	3.11	2.1	0.004	0.67	0.0	0.04	16.92	0.01	2.131	5.35	2.40	4.1	95.8	0.1	-0.20	0.79	0.81	3.03	2.1	0.003	0.63	0.0	0.04	16.98	0.01	2.277	3.45	3.04	4.4	95.5	0.1	0.90	0.83	0.80	0.82	2.71	9860	1240	7	0	5	0	0	logfile
✔	8Y56	38930	2025-02-11	2024-01-31	2.83	3.24	2.98	3.1	0.006	0.73	2.0	0.04	15.56	0.00	2.279	12.30	0.98	3.1	96.9	0.0	0.73	0.59	0.76	3.30	3.2	0.004	0.61	0.0	0.04	15.48	0.00	2.521	9.66	1.96	3.6	96.4	0.0	2.33	1.91	0.54	0.75	3.31	4796	586	2	0	7	5	0	logfile
✔	8Y52	38928	2025-02-12	2024-01-31	2.9	4.04	2.90	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.008	0.99	1.0	0.05	12.83	0.01	1.843	31.23	1.98	2.2	97.8	0.0	-0.90	3.24	0.67	0.83	1.62	7380	931	5	0	1	0	0	logfile
✔	8VVH	43559	2025-02-12	2024-01-31	3.95	4.19	3.95	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.003	0.65	0.0	0.04	16.96	0.00	2.525	6.10	5.87	7.3	92.6	0.1	-1.30	0.30	0.69	0.80	1.98	6877	941	4	0	0	0	0	logfile
✔	8Y5F	38933	2025-02-14	2024-01-31	3.13	2.36	3.22	2.2	0.003	0.66	1.0	0.05	17.96	0.01	2.255	6.71	1.84	4.3	95.5	0.2	0.71	0.78	0.79	2.17	2.1	0.003	0.64	0.0	0.04	17.87	0.01	2.418	4.86	3.23	4.1	95.8	0.1	0.79	0.86	0.79	0.81	1.71	9846	1240	4	0	0	0	0	logfile
✔	8VVi	43560	2025-02-12	2024-01-31	2.8	3.04	2.78	3.1	0.002	0.44	0.0	0.04	13.85	0.00	2.197	7.21	0.00	3.9	96.1	0.0	-0.11	0.63	0.80	3.25	3.1	0.004	0.59	0.0	0.04	16.83	0.00	2.429	7.15	1.65	4.1	95.9	0.0	1.26	1.69	0.67	0.84	3.02	7762	968	7	0	0	0	0	logfile
✔	8VVF	43557	2025-02-13	2024-01-31	3.0	2.62	—	3.1	0.003	0.67	0.0	0.05	12.63	0.00	2.229	5.99	0.00	4.7	95.3	0.0	-1.37	0.77	0.75	1.34	3.1	0.004	0.69	0.0	0.04	15.76	0.00	2.321	11.86	2.67	5.1	94.9	0.0	-0.17	0.56	0.78	0.77	1.76	8581	1135	6	0	1	0	0	logfile
✔	8VUZ	43545	2025-02-11	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.004	0.74	0.0	0.04	17.48	0.00	2.468	11.07	4.61	6.3	93.7	0.0	0.15	0.95	0.75	0.84	1.41	6626	869	4	0	0	0	0	logfile
✔	8Y3T	38898	2025-02-10	2024-01-29	2.61	2.83	2.38	2.8	0.008	0.72	0.0	0.05	12.61	0.00	2.231	9.51	0.00	3.5	96.5	0.0	0.24	0.44	0.80	4.67	2.8	0.004	0.58	0.0	0.05	16.32	0.00	2.660	6.43	2.06	1.7	98.3	0.0	0.95	1.04	0.46	0.83	3.79	1790	238	2	0	0	0	0	logfile
✘	8VUQ	43536	2025-02-13	2024-01-29	3.85	4.17	3.94	4.1	0.003	0.62	0.0	0.04	17.33	0.01	2.133	8.08	0.66	12.1	87.5	0.4	-1.68	0.71	0.83	1.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8657	1161	4	0	0	0	0	logfile
✔	8VUL	43532	2025-02-12	2024-01-29	3.83	4.04	6.77	4.0	0.004	0.68	0.0	0.04	16.80	0.01	2.218	7.73	0.27	8.8	90.9	0.3	-1.67	0.75	0.82	1.77	4.0	0.004	0.69	0.0	0.04	17.22	0.00	2.427	6.01	3.41	9.7	89.9	0.3	-1.43	0.30	0.74	0.82	1.70	7158	963	4	0	0	0	0	logfile
✔	8VUV	43541	2025-02-13	2024-01-29	3.69	3.94	3.73	3.9	0.003	0.63	0.0	0.04	17.33	0.00	2.159	8.86	0.11	7.7	92.1	0.2	-1.24	0.68	0.74	1.50	3.9	0.005	0.70	0.0	0.05	17.74	0.00	2.536	6.65	5.20	9.3	90.6	0.2	-1.27	0.32	0.68	0.74	1.61	8586	1154	4	0	0	0	0	logfile

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