Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VUV	43541	2025-02-13	2024-01-29	3.69	3.94	3.73	3.9	0.003	0.63	0.0	0.04	17.33	0.00	2.159	8.86	0.11	7.7	92.1	0.2	-1.24	0.68	0.74	1.50	3.9	0.005	0.70	0.0	0.05	17.74	0.00	2.536	6.65	5.20	9.3	90.6	0.2	-1.27	0.32	0.68	0.74	1.61	8586	1154	4	0	0	0	0	logfile
✔	8Y3N	38892	2025-02-11	2024-01-29	3.8	4.11	3.77	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.2	0.005	0.71	0.0	0.05	15.55	0.01	2.590	8.67	1.97	10.5	89.5	0.0	-1.61	1.03	0.43	0.79	3.15	3694	494	4	0	0	0	0	logfile
✔	8Y32	38866	2025-02-11	2024-01-28	4.13	3.53	3.37	3.5	0.004	0.70	0.0	0.05	21.05	0.01	2.120	9.81	0.72	6.5	93.3	0.3	-1.08	0.63	0.72	—	3.5	0.003	0.65	0.0	0.04	14.72	0.00	2.321	6.46	0.14	6.0	93.8	0.3	-0.89	1.62	0.62	0.70	—	6571	791	4	0	8	0	0	logfile
✔	8VU5	43526	2025-02-11	2024-01-28	3.39	3.60	3.36	3.6	0.005	0.81	1.0	0.05	17.68	0.01	2.195	16.26	1.44	7.6	92.4	0.0	-1.20	0.67	0.73	1.46	3.6	0.004	0.68	0.0	0.04	17.95	0.00	2.500	14.36	3.85	6.6	93.4	0.0	-1.01	0.32	0.66	0.73	1.96	5616	719	3	0	0	0	0	logfile
✔	8Y2Q	38863	2025-02-10	2024-01-27	2.8	2.79	2.51	2.8	0.006	0.61	0.0	0.05	10.80	0.00	2.276	6.21	0.00	5.7	94.3	0.0	-2.99	0.45	0.84	7.18	2.8	0.004	0.57	0.0	0.05	14.30	0.00	2.606	4.21	6.31	5.0	95.0	0.0	-1.77	0.29	0.45	0.85	7.85	2214	330	6	0	0	0	0	logfile
✔	8Y2P	38862	2025-02-10	2024-01-27	3.2	2.83	2.77	3.2	0.011	0.84	0.0	0.06	10.62	0.00	2.214	7.54	0.00	3.8	96.2	0.0	-2.66	0.46	0.87	5.28	3.2	0.002	0.52	0.0	0.05	14.40	0.00	2.653	5.10	3.15	2.5	97.5	0.0	-1.02	0.97	0.43	0.87	3.74	2214	330	6	0	0	0	0	logfile
✔	8Y2i	38856	2025-02-13	2024-01-26	2.92	3.09	2.91	3.1	0.006	0.79	1.0	0.05	21.15	0.01	2.219	11.22	0.71	12.5	87.5	0.0	-2.35	0.64	0.69	1.65	3.1	0.003	0.62	0.0	0.03	21.80	0.00	2.551	9.03	2.49	9.3	90.7	0.0	-0.86	1.23	0.66	0.71	1.32	8676	723	4	143	0	0	0	logfile
✔	8Y2N	38858	2025-02-12	2024-01-26	3.19	3.51	3.24	3.5	0.011	1.21	2.0	0.10	15.98	0.01	1.998	17.33	2.96	6.8	91.7	1.6	-0.68	0.56	0.74	3.61	3.5	0.003	0.62	0.0	0.04	17.08	0.00	2.335	7.50	3.46	5.0	94.8	0.2	0.67	2.24	0.59	0.78	2.53	7714	896	8	0	8	0	0	logfile
✔	8VTi	43523	2025-02-11	2024-01-26	3.9	4.17	3.94	4.0	0.012	1.49	1.0	0.09	14.58	0.01	2.503	5.97	3.54	9.4	90.5	0.2	-3.01	0.62	0.68	1.27	4.0	0.003	0.73	0.0	0.04	15.65	0.00	2.494	9.23	4.33	5.8	94.2	0.0	-0.75	2.89	0.69	0.77	1.30	4667	596	6	0	4	0	0	logfile
✔	8VT3	43517	2025-02-14	2024-01-25	3.33	3.63	3.39	3.6	0.011	0.87	0.0	0.06	18.19	0.01	2.153	4.40	0.00	8.1	91.9	0.0	-3.58	0.79	0.87	3.85	3.6	0.003	0.59	0.0	0.05	14.51	0.00	2.519	3.24	0.94	4.7	95.3	0.0	-1.32	0.96	0.77	0.87	3.05	10758	1377	15	0	18	0	0	logfile
✔	8Y2E	38852	2025-02-11	2024-01-25	3.03	3.33	3.15	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.52	0.0	0.04	16.68	0.00	2.629	2.37	4.07	3.3	96.7	0.0	1.78	0.26	0.58	0.84	2.97	4214	528	2	0	3	0	0	logfile
✔	8Y2D	38851	2025-02-11	2024-01-25	2.8	2.99	2.87	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.002	0.48	0.0	0.04	16.89	0.00	2.263	1.56	2.26	2.9	97.1	0.0	1.20	0.24	0.59	0.85	1.86	4189	528	2	0	4	4	0	logfile
✔	8VT2	43516	2025-02-14	2024-01-25	3.14	3.48	3.27	3.5	0.014	0.96	0.0	0.06	15.92	0.01	2.144	7.00	0.00	7.7	92.3	0.0	-1.30	0.72	0.84	3.85	3.5	0.005	0.63	0.0	0.05	14.26	0.00	2.515	4.16	0.95	6.1	93.9	0.0	-0.22	0.25	0.60	0.78	3.10	10674	1362	12	0	18	0	0	logfile
✔	8Y1X	38849	2025-02-12	2024-01-25	3.68	4.94	3.75	4.4	0.003	0.65	0.0	0.05	15.44	0.00	2.289	5.45	0.46	3.0	97.0	0.0	0.41	0.71	0.71	1.11	4.4	0.004	0.78	0.0	0.04	16.09	0.00	2.469	9.56	2.44	4.3	95.7	0.0	1.41	1.34	0.73	0.85	0.99	8074	1088	4	0	0	0	0	logfile
✔	8Y2C	38850	2025-02-11	2024-01-25	3.16	3.42	3.25	3.5	0.003	0.51	0.0	0.04	19.03	0.00	2.160	5.35	0.00	4.2	95.8	0.0	0.76	0.55	0.83	1.39	3.5	0.002	0.48	0.0	0.04	17.60	0.00	2.630	3.21	3.38	3.6	96.4	0.0	1.37	0.17	0.56	0.83	0.87	4207	529	2	0	2	0	0	logfile
✔	8VSB	43492	2025-02-12	2024-01-23	2.93	3.23	2.99	3.2	0.009	0.95	0.0	0.05	12.83	0.01	2.198	5.48	0.00	7.7	92.3	0.0	-2.77	0.71	0.82	4.21	3.2	0.002	0.62	0.0	0.04	15.77	0.00	2.544	3.54	1.57	4.4	95.6	0.0	-1.49	0.79	0.65	0.81	3.32	7519	969	3	0	0	0	0	logfile
✔	8RRR	19462	2025-02-11	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.003	0.69	0.0	0.05	15.44	0.00	2.516	6.52	2.98	5.8	94.2	0.0	-4.04	1.53	0.40	0.77	4.98	4925	735	10	0	0	0	0	logfile
✔	8VSE	43497	2025-02-12	2024-01-23	3.8	4.42	3.88	4.0	0.002	0.51	0.0	0.04	9.30	0.00	2.297	8.67	1.48	4.5	95.5	0.0	1.15	0.78	0.67	0.85	4.0	0.003	0.66	0.0	0.05	13.31	0.00	2.492	11.98	1.14	4.7	95.3	0.0	0.23	1.51	0.83	0.76	1.34	8043	963	13	0	20	0	0	logfile
✔	8Y0Y	38823	2025-02-12	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.005	0.74	0.0	0.05	15.33	0.01	2.432	3.46	4.07	7.6	92.4	0.0	-1.04	1.20	0.66	0.78	3.21	5027	652	4	0	1	0	0	logfile
✔	8VRW	43488	2025-02-14	2024-01-22	3.03	2.28	3.04	2.1	0.004	0.60	0.0	0.05	10.40	0.02	2.030	18.92	0.52	4.3	95.7	0.0	-1.34	0.67	0.64	2.23	1.5	0.004	0.66	0.0	0.04	13.82	0.01	2.382	11.50	2.00	4.4	95.6	0.0	-0.81	1.14	0.67	0.66	2.41	10413	1272	9	0	0	0	0	logfile

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