Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8XZG	38795	2025-02-12	2024-01-21	3.2	3.59	3.31	3.6	0.008	0.88	0.0	0.06	14.04	0.00	2.173	9.19	1.56	6.1	93.8	0.1	-2.72	0.62	0.77	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7172	919	5	0	0	0	0	logfile
✔	8XZF	38794	2025-02-13	2024-01-21	3.0	2.18	—	2.9	0.007	0.72	1.0	0.05	12.98	0.00	2.091	9.31	0.51	4.3	95.5	0.2	-2.36	0.79	0.81	4.27	2.9	0.005	0.66	0.0	0.04	15.89	0.00	2.439	8.02	2.25	4.0	96.0	0.1	0.15	0.52	0.80	0.83	3.70	9062	1161	7	0	1	0	0	logfile
✔	8XZB	38792	2025-02-14	2024-01-21	3.12	4.44	3.15	3.8	0.007	1.64	8.0	0.13	17.47	0.01	1.941	19.64	4.45	1.7	97.8	0.5	2.75	0.82	0.70	2.45	3.8	0.003	0.65	0.0	0.04	17.09	0.00	2.521	5.91	1.15	2.7	97.3	0.0	1.98	1.73	0.89	0.85	2.10	6412	787	3	0	1	0	0	logfile
✔	8XZA	38791	2025-02-11	2024-01-21	4.07	4.37	3.89	4.2	0.007	1.10	1.0	0.06	16.31	0.01	1.212	30.95	0.14	8.0	91.1	0.9	-1.65	0.71	0.72	—	4.2	0.003	0.78	0.0	0.05	14.07	0.00	2.396	17.54	0.00	5.2	94.7	0.1	-0.94	1.30	0.72	0.74	—	6565	790	4	0	9	0	0	logfile
✔	8XZi	38797	2025-02-13	2024-01-21	2.7	1.98	—	1.7	0.021	1.72	2.0	0.09	9.40	0.01	1.226	1.67	0.20	2.2	97.6	0.2	1.22	0.73	0.82	4.38	1.7	0.005	0.72	0.0	0.05	14.90	0.00	2.450	5.64	1.63	3.6	96.4	0.0	1.15	1.09	0.75	0.85	3.42	9041	1149	6	0	1	0	0	logfile
✔	8XZH	38796	2025-02-13	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.004	0.61	0.0	0.04	16.43	0.00	2.475	5.74	2.65	2.3	97.7	0.0	1.04	0.45	0.78	0.85	4.07	9048	1159	6	0	0	0	0	logfile
✔	8XZJ	38798	2025-02-13	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.004	0.65	0.0	0.04	15.14	0.00	2.547	7.97	2.32	2.4	97.5	0.1	0.93	1.18	0.74	0.80	3.12	9106	1162	6	0	0	0	0	logfile
✔	8XYo	38779	2025-02-11	2024-01-20	3.04	2.30	3.00	2.0	0.004	0.59	0.0	0.04	13.69	0.00	2.097	6.03	0.00	3.5	96.5	0.0	0.35	0.79	0.82	3.95	2.1	0.005	0.61	0.0	0.04	15.93	0.00	2.361	4.67	2.51	3.3	96.7	0.0	0.65	0.93	0.78	0.82	3.72	6369	771	4	0	8	0	0	logfile
✔	8XYC	38768	2025-02-13	2024-01-19	2.51	2.68	2.52	2.8	0.005	0.79	0.0	0.04	21.13	0.01	2.167	10.29	2.41	4.7	95.3	0.0	0.21	0.66	0.70	2.20	2.8	0.003	0.65	0.0	0.04	21.69	0.00	2.203	8.70	2.73	2.3	97.7	0.0	1.13	0.58	0.67	0.71	2.06	9244	749	4	153	0	0	0	logfile
✔	8XYJ	38775	2025-02-11	2024-01-19	3.33	3.55	3.09	3.5	0.012	1.02	0.0	0.05	15.95	0.01	2.196	17.47	8.03	10.1	89.5	0.4	-3.13	0.56	0.85	2.49	3.6	0.003	0.71	0.0	0.04	15.49	0.00	2.568	10.04	4.92	7.2	92.8	0.0	1.30	0.42	0.53	0.84	2.45	3582	460	2	0	0	0	0	logfile
✔	8XXX	38764	2025-02-13	2024-01-19	3.17	3.64	3.44	3.7	0.003	0.57	0.0	0.04	15.15	0.00	2.204	8.80	0.52	3.1	96.9	0.0	0.37	0.62	0.76	1.50	3.6	0.003	0.59	0.0	0.04	15.84	0.00	2.374	6.80	2.71	2.7	97.3	0.0	0.84	1.55	0.63	0.78	1.55	9083	1196	6	0	0	0	0	logfile
✔	8XXW	38763	2025-02-12	2024-01-19	3.03	2.29	3.01	2.0	0.003	0.57	0.0	0.04	16.10	0.01	2.212	6.09	0.12	2.0	98.0	0.0	1.00	0.80	0.81	2.71	2.0	0.003	0.56	0.0	0.04	16.45	0.00	2.400	4.70	1.81	2.1	97.9	0.0	1.50	0.38	0.80	0.82	2.41	7723	950	6	0	4	0	0	logfile
✔	8RQL	19445	2025-02-13	2024-01-18	3.03	3.10	—	3.3	0.003	0.53	0.0	0.04	12.19	0.00	2.097	5.46	0.22	3.4	96.6	0.0	0.33	0.54	0.79	3.34	3.3	0.003	0.59	0.0	0.04	15.25	0.00	2.437	5.40	2.43	3.8	96.2	0.0	0.48	0.59	0.61	0.85	2.96	8646	1126	6	0	2	0	0	logfile
✔	8XXi	38750	2025-02-11	2024-01-18	3.04	3.42	2.82	3.4	0.007	0.83	0.0	0.05	17.38	0.00	2.180	13.07	10.00	8.0	91.6	0.4	-2.27	0.55	0.83	3.11	3.4	0.004	0.65	0.0	0.04	16.47	0.00	2.278	6.67	3.08	6.5	93.5	0.0	1.41	3.43	0.43	0.78	2.26	3622	466	3	0	1	0	0	logfile
✔	8VQA	43436	2025-02-14	2024-01-18	3.5	3.83	3.41	3.9	0.011	1.34	0.0	0.09	9.89	0.00	2.443	0.78	0.77	2.6	96.7	0.7	0.07	0.62	0.70	3.56	3.9	0.003	0.61	0.0	0.04	12.93	0.00	2.629	3.39	1.29	3.9	96.1	0.0	0.74	1.16	0.71	0.78	3.07	9495	1290	18	0	30	0	0	logfile
✔	8VQ9	43435	2025-02-14	2024-01-18	2.7	2.88	2.71	2.9	0.010	1.20	0.0	0.08	9.90	0.00	2.511	0.94	0.00	2.9	97.1	0.0	0.54	0.66	0.75	4.36	2.9	0.003	0.57	0.0	0.04	14.10	0.00	2.603	3.36	0.95	1.7	98.3	0.0	1.91	1.11	0.73	0.83	3.55	9513	1278	15	0	27	0	0	logfile
✔	8XXR	38759	2025-02-13	2024-01-18	3.17	3.53	3.33	3.6	0.003	0.53	0.0	0.04	14.88	0.00	2.204	7.77	0.43	3.2	96.8	0.0	0.40	0.59	0.76	1.90	3.6	0.002	0.57	0.0	0.04	15.77	0.00	2.510	6.37	2.06	2.4	97.6	0.0	0.73	1.09	0.59	0.76	1.66	8630	1125	5	0	0	0	0	logfile
✔	8VQD	43439	2025-02-11	2024-01-18	2.61	3.20	2.60	3.0	0.005	0.81	0.0	0.05	16.76	0.01	2.265	3.32	0.81	1.9	98.1	0.0	0.18	0.82	0.89	4.21	3.0	0.004	0.61	0.0	0.04	16.71	0.00	2.557	4.48	2.58	2.1	97.9	0.0	0.46	0.36	0.76	0.88	4.33	5686	736	4	0	2	0	0	logfile
✔	8XXH	38749	2025-02-14	2024-01-18	2.8	3.03	2.86	3.0	0.003	0.48	0.0	0.04	12.74	0.00	2.230	4.80	0.00	3.0	97.0	0.0	0.50	0.74	0.79	2.29	2.9	0.005	0.83	0.0	0.05	16.52	0.00	2.154	7.51	2.70	3.5	96.5	0.0	0.94	1.30	0.78	0.87	2.69	9646	1264	7	0	0	0	0	logfile
✔	8VQB	43437	2025-02-14	2024-01-18	3.0	3.29	2.99	3.3	0.011	1.29	0.0	0.09	10.78	0.00	2.555	0.65	0.71	3.1	96.9	0.0	0.40	0.60	0.74	3.77	3.3	0.002	0.57	0.0	0.04	14.83	0.00	2.499	3.86	2.38	1.8	98.2	0.0	1.09	1.30	0.64	0.80	3.38	9678	1296	18	0	30	0	0	logfile

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