Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XX6	38747	2025-02-14	2024-01-17	2.99	3.23	3.12	3.2	0.002	0.47	0.0	0.04	12.90	0.00	2.229	4.30	0.00	3.3	96.7	0.0	0.68	0.73	0.82	2.56	3.2	0.003	0.78	0.0	0.04	15.87	0.00	2.312	8.50	1.98	4.0	96.0	0.0	0.61	1.69	0.74	0.85	2.81	9854	1278	7	0	0	0	0	logfile
✔	8XX3	38744	2025-02-13	2024-01-17	3.38	3.59	3.45	3.5	0.003	0.53	0.0	0.04	12.56	0.00	2.230	5.62	0.10	3.5	96.5	0.0	0.68	0.74	0.79	2.11	3.5	0.003	0.74	0.0	0.04	15.73	0.00	2.395	7.65	2.81	3.6	96.4	0.0	0.65	2.47	0.76	0.85	2.37	9488	1255	7	0	0	0	0	logfile
✔	8VoW	43393	2025-02-13	2024-01-16	3.44	3.70	3.48	3.7	0.003	0.55	0.0	0.04	15.06	0.00	1.916	8.24	0.21	5.9	94.1	0.0	1.32	0.69	0.80	1.34	3.7	0.003	0.56	0.0	0.04	16.76	0.00	1.946	7.47	1.64	6.1	93.9	0.0	1.63	0.31	0.69	0.82	1.08	8917	1131	4	0	5	0	0	logfile
✔	8XWQ	38741	2025-02-13	2024-01-16	4.6	4.22	4.62	4.1	0.003	0.55	0.0	0.04	12.78	0.00	2.145	14.35	7.98	3.6	96.4	0.0	-0.12	0.72	0.74	—	4.1	0.003	0.75	0.0	0.04	12.48	0.00	2.351	15.34	0.10	4.1	95.9	0.0	-0.62	1.88	0.73	0.75	—	9076	1163	6	0	0	0	0	logfile
✔	8XWA	38732	2025-02-10	2024-01-16	3.48	3.63	3.42	3.5	0.002	0.46	0.0	0.04	13.51	0.00	2.398	1.77	0.00	1.4	98.6	0.0	1.63	0.59	0.80	2.60	3.5	0.003	0.62	0.0	0.04	16.01	0.00	2.600	6.05	3.02	2.1	97.9	0.0	1.72	3.21	0.64	0.84	1.05	3301	426	3	0	0	0	0	logfile
✔	8XWF	38734	2025-02-10	2024-01-16	3.65	3.87	3.68	3.8	0.004	0.58	0.0	0.04	13.12	0.00	2.340	2.09	0.00	1.2	98.8	0.0	2.95	0.53	0.75	1.98	3.8	0.003	0.67	0.0	0.04	15.87	0.00	2.531	5.15	2.51	1.5	98.5	0.0	2.57	1.28	0.59	0.81	1.41	3090	418	3	0	0	0	0	logfile
✔	8XWM	38738	2025-02-10	2024-01-16	3.71	3.91	3.75	3.8	0.003	0.55	0.0	0.04	14.01	0.00	2.235	4.23	0.36	2.2	97.8	0.0	1.69	0.51	0.76	1.04	3.8	0.003	0.65	0.0	0.04	16.24	0.00	2.556	6.07	6.50	2.5	97.5	0.0	1.95	0.83	0.56	0.80	1.81	2722	363	2	0	0	0	0	logfile
✔	8XWS	38742	2025-02-11	2024-01-16	3.06	3.20	3.05	3.1	0.005	0.54	0.0	0.04	12.60	0.00	2.240	3.02	0.00	1.4	98.6	0.0	2.29	0.54	0.76	3.25	3.1	0.004	0.63	0.0	0.04	15.38	0.00	2.443	5.10	2.27	1.5	98.5	0.0	2.31	0.70	0.64	0.86	2.26	5656	730	4	0	0	0	0	logfile
✔	8XWV	38743	2025-02-13	2024-01-16	3.07	3.41	3.13	3.4	0.003	0.52	0.0	0.04	15.24	0.00	2.265	6.81	0.11	2.5	97.5	0.0	1.02	0.70	0.81	2.43	3.4	0.003	0.58	0.0	0.04	15.67	0.00	2.501	5.81	2.75	3.1	96.9	0.0	1.02	1.08	0.67	0.81	2.45	9211	1257	7	0	0	0	0	logfile
✔	8XWP	38740	2025-02-13	2024-01-16	3.21	3.22	3.19	3.4	0.002	0.47	0.0	0.04	12.28	0.00	2.144	8.97	5.56	3.9	96.1	0.0	-0.38	0.67	0.77	1.87	3.4	0.004	0.98	1.0	0.04	15.14	0.00	1.999	12.41	4.95	4.5	95.5	0.0	-0.30	1.29	0.66	0.76	1.38	9076	1163	6	0	0	0	0	logfile
✔	8XWN	38739	2025-02-11	2024-01-16	3.29	3.44	3.28	3.4	0.002	0.47	0.0	0.04	14.07	0.00	2.229	2.54	0.00	1.6	98.4	0.0	2.53	0.57	0.80	2.04	3.4	0.003	0.59	0.0	0.04	16.28	0.00	2.387	6.06	3.13	0.9	99.1	0.0	2.11	1.34	0.63	0.85	1.35	3496	441	3	0	0	0	0	logfile
✔	8VPA	43405	2025-02-13	2024-01-16	3.11	3.39	3.19	3.4	0.003	0.52	0.0	0.04	14.44	0.00	2.224	4.91	0.00	2.8	97.2	0.0	2.35	0.61	0.84	2.93	3.4	0.002	0.51	0.0	0.04	15.76	0.00	2.477	4.74	1.68	2.9	97.1	0.0	2.57	0.69	0.62	0.84	2.63	8658	1098	4	0	2	0	0	logfile
✔	8VPP	43412	2025-02-14	2024-01-16	2.9	3.20	2.97	3.2	0.004	0.65	0.0	0.14	19.24	0.01	1.832	47.41	4.30	4.9	94.8	0.3	0.42	0.54	0.81	2.12	3.2	0.003	0.78	0.0	0.07	18.94	0.00	2.166	8.66	3.35	3.9	95.8	0.2	0.80	1.36	0.57	0.84	2.38	9930	1264	3	0	1	2	0	logfile
✔	8XW5	38731	2025-02-12	2024-01-16	3.56	3.90	3.62	3.9	0.003	0.53	0.0	0.04	14.48	0.00	2.029	4.36	0.23	1.1	98.9	0.0	0.96	0.48	0.72	2.18	3.9	0.003	0.50	0.0	0.04	15.48	0.00	2.541	4.60	2.33	1.8	98.2	0.0	1.64	0.81	0.64	0.81	2.16	8052	1086	2	0	0	0	0	logfile
✔	8XW2	38728	2025-02-14	2024-01-15	3.59	3.94	3.75	3.9	0.005	0.76	0.0	0.05	13.68	0.01	2.169	11.00	0.00	5.2	94.8	0.0	0.69	0.65	0.81	2.45	3.9	0.003	0.70	0.0	0.04	16.00	0.00	2.502	7.86	1.42	4.5	95.5	0.0	1.17	0.49	0.66	0.81	1.90	10150	1268	2	0	0	0	0	logfile
✔	8XVZ	38724	2025-02-13	2024-01-15	3.78	3.95	3.77	3.8	0.011	1.05	0.0	0.05	13.53	0.01	1.969	17.84	0.00	16.2	83.5	0.3	-2.09	0.67	0.81	2.88	3.8	0.003	0.82	0.0	0.04	15.82	0.01	2.455	10.53	2.80	12.1	87.6	0.2	-0.46	1.16	0.64	0.78	1.62	8690	1223	2	0	0	0	0	logfile
✔	8XVi	38705	2025-02-13	2024-01-15	3.32	2.33	3.41	2.2	0.004	0.62	0.0	0.04	16.87	0.00	2.200	9.83	0.43	5.0	95.0	0.0	-0.52	0.73	0.72	0.95	2.2	0.005	0.70	0.0	0.05	17.24	0.00	2.523	8.48	4.26	6.6	93.4	0.0	-0.17	0.25	0.73	0.72	0.97	8587	1084	6	0	0	0	0	logfile
✔	8XVU	38719	2025-02-10	2024-01-15	3.09	3.24	3.09	3.2	0.004	0.51	0.0	0.04	13.71	0.00	2.377	2.98	0.00	1.0	99.0	0.0	2.06	0.61	0.79	2.08	3.2	0.003	0.71	0.0	0.04	15.88	0.00	2.549	5.95	1.39	1.7	98.3	0.0	2.37	1.31	0.67	0.86	2.13	3288	427	3	0	0	0	0	logfile
✔	8XW4	38730	2025-02-11	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.75	0.0	0.04	17.11	0.00	2.521	10.56	3.27	8.0	92.0	0.0	0.19	0.57	0.54	0.77	0.79	5027	619	1	0	0	0	0	logfile
✔	8XVE	38702	2025-02-13	2024-01-15	3.0	2.32	3.07	2.1	0.004	0.63	0.0	0.04	16.63	0.01	2.050	7.99	0.65	2.0	98.0	0.0	0.79	0.77	0.78	2.64	2.1	0.003	0.68	0.0	0.04	17.76	0.00	2.459	7.05	3.98	2.4	97.6	0.0	0.80	0.44	0.77	0.79	2.22	8524	1078	6	0	0	0	0	logfile

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