Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XVi	38705	2025-02-13	2024-01-15	3.32	2.33	3.41	2.2	0.004	0.62	0.0	0.04	16.87	0.00	2.200	9.83	0.43	5.0	95.0	0.0	-0.52	0.73	0.72	0.95	2.2	0.005	0.70	0.0	0.05	17.24	0.00	2.523	8.48	4.26	6.6	93.4	0.0	-0.17	0.25	0.73	0.72	0.97	8587	1084	6	0	0	0	0	logfile
✔	8XW3	38729	2025-02-14	2024-01-15	3.63	3.91	3.69	3.9	0.005	0.73	0.0	0.04	13.29	0.00	2.085	8.25	0.00	4.6	95.4	0.0	1.53	0.66	0.83	2.11	3.9	0.004	0.69	0.0	0.04	15.35	0.00	2.535	6.83	1.61	4.0	96.0	0.0	1.66	1.14	0.66	0.83	1.76	10150	1268	2	0	0	0	0	logfile
✔	8XVE	38702	2025-02-13	2024-01-15	3.0	2.32	3.07	2.1	0.004	0.63	0.0	0.04	16.63	0.01	2.050	7.99	0.65	2.0	98.0	0.0	0.79	0.77	0.78	2.64	2.1	0.003	0.68	0.0	0.04	17.76	0.00	2.459	7.05	3.98	2.4	97.6	0.0	0.80	0.44	0.77	0.79	2.22	8524	1078	6	0	0	0	0	logfile
✔	8XV0	38688	2025-02-14	2024-01-14	3.0	3.23	3.06	3.3	0.003	0.56	0.0	0.05	14.70	0.00	2.242	3.63	0.00	4.2	95.8	0.0	1.12	0.48	0.64	2.55	3.2	0.003	0.60	0.0	0.04	15.38	0.00	2.515	4.87	1.87	4.6	95.4	0.0	1.14	0.59	0.67	0.81	2.71	6633	790	8	0	16	0	0	logfile
✔	8XV9	38693	2025-02-10	2024-01-14	3.8	2.50	3.79	2.0	0.008	0.94	0.0	0.05	12.31	0.01	2.402	2.22	0.00	5.5	94.5	0.0	-3.53	0.58	0.61	1.87	2.9	0.004	0.76	0.0	0.04	16.91	0.00	2.528	11.72	1.80	4.2	95.8	0.0	1.10	1.31	0.60	0.64	1.51	3147	388	2	0	1	0	0	logfile
✔	8XV5	38692	2025-02-10	2024-01-14	3.7	2.43	3.72	2.9	0.005	0.90	0.0	0.05	9.70	0.01	2.280	3.19	0.00	4.4	95.6	0.0	-3.67	0.68	0.71	3.33	2.1	0.005	0.69	0.0	0.04	14.72	0.00	2.548	10.53	4.20	3.4	96.6	0.0	0.97	0.65	0.69	0.72	3.50	3122	388	2	0	1	0	0	logfile
✔	8XV1	38689	2025-02-14	2024-01-14	3.05	3.37	3.22	3.4	0.003	0.57	0.0	0.05	15.77	0.00	2.244	3.39	0.00	4.7	95.3	0.0	1.11	0.48	0.66	2.62	3.3	0.003	0.59	0.0	0.04	15.55	0.00	2.555	3.16	1.43	5.3	94.6	0.1	0.72	1.81	0.64	0.82	2.99	6652	794	7	0	15	0	0	logfile
✔	8XV2	38691	2025-02-10	2024-01-14	3.7	2.50	3.71	2.8	0.009	0.99	0.0	0.06	9.84	0.01	2.318	2.55	0.00	5.2	94.8	0.0	-3.54	0.65	0.73	3.48	2.2	0.006	1.38	1.0	0.04	15.16	0.00	2.350	11.63	1.50	3.6	96.4	0.0	1.69	1.24	0.66	0.73	2.47	3128	388	2	0	1	0	0	logfile
✘	8XUU	38684	2025-02-11	2024-01-14	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3598	431	3	0	9	0	0	logfile
✔	8XUM	38677	2025-02-12	2024-01-13	2.9	3.70	2.77	3.4	0.006	1.22	6.0	0.07	16.90	0.02	2.342	4.10	3.20	4.3	95.4	0.3	-0.29	0.71	0.84	2.20	3.4	0.003	0.78	0.0	0.05	16.58	0.00	2.486	8.41	3.08	3.0	96.9	0.1	0.14	0.54	0.68	0.80	2.28	7359	951	3	0	0	0	0	logfile
✔	8RoY	19407	2025-02-12	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.006	0.67	0.0	0.04	15.03	0.00	2.471	6.44	4.82	5.3	94.6	0.1	-0.87	1.02	0.79	0.83	2.67	8294	1174	4	0	1	0	0	logfile
✔	8VLW	43346	2025-02-13	2024-01-12	3.34	4.10	3.47	3.8	0.013	1.22	0.0	0.08	14.55	0.01	2.196	8.31	0.10	2.2	97.6	0.3	1.74	0.81	0.88	1.93	3.8	0.004	0.63	0.0	0.04	16.94	0.00	2.434	7.60	1.46	1.6	98.3	0.1	4.00	0.93	0.78	0.88	1.23	9093	1173	7	0	0	0	0	logfile
✔	8VLY	43348	2025-02-12	2024-01-12	3.61	3.88	3.58	3.8	0.004	0.55	0.0	0.04	15.20	0.00	2.180	8.34	0.38	4.6	95.4	0.0	1.00	0.64	0.86	1.88	3.8	0.003	0.54	0.0	0.04	15.84	0.00	2.604	5.86	3.38	4.1	95.9	0.0	1.17	0.87	0.65	0.86	1.86	7755	992	5	0	7	0	0	logfile
✔	8RoX	19406	2025-02-12	2024-01-12	3.3	4.29	3.46	4.0	0.008	1.02	0.0	0.07	12.77	0.01	2.316	2.97	1.59	5.1	94.9	0.0	-1.84	0.80	0.76	2.56	4.0	0.005	0.66	0.0	0.04	13.35	0.00	2.480	5.56	5.77	4.9	95.1	0.0	-0.68	1.58	0.82	0.80	2.73	7249	1134	4	0	1	0	0	logfile
✔	8XTX	38652	2025-02-10	2024-01-12	3.4	3.67	3.56	3.9	0.004	0.77	0.0	0.04	17.36	0.01	2.218	4.59	0.66	7.7	92.3	0.0	0.04	0.46	0.82	0.99	3.9	0.003	0.63	0.0	0.04	17.50	0.01	2.536	4.93	5.28	6.6	93.4	0.0	0.80	0.41	0.44	0.81	1.29	2876	382	1	0	0	0	0	logfile
✘	8VLU	43344	2025-02-13	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✔	8VLV	43345	2025-02-12	2024-01-12	3.49	3.80	3.51	3.8	0.003	0.56	0.0	0.04	15.45	0.00	2.192	10.08	0.12	5.3	94.7	0.0	0.75	0.63	0.83	2.72	3.8	0.003	0.59	0.0	0.04	15.41	0.00	2.564	7.55	2.25	5.8	94.2	0.0	0.73	0.25	0.69	0.87	2.04	8265	1085	5	0	9	0	0	logfile
✔	8RoZ	19408	2025-02-11	2024-01-12	2.7	2.95	2.73	3.0	0.005	0.56	0.0	0.04	17.46	0.00	2.219	5.09	1.06	1.9	98.1	0.0	1.04	0.64	0.85	2.73	3.0	0.004	0.63	0.0	0.04	18.19	0.01	2.592	4.27	3.33	1.8	98.2	0.0	1.49	0.90	0.69	0.87	2.79	6079	751	3	0	0	0	0	logfile
✔	8XTW	38651	2025-02-10	2024-01-12	3.3	3.50	3.27	3.6	0.004	0.80	1.0	0.05	15.82	0.01	2.302	5.25	0.33	6.4	93.6	0.0	0.29	0.47	0.79	1.82	3.6	0.003	0.59	0.0	0.04	16.34	0.01	2.597	2.54	2.64	3.2	96.8	0.0	2.15	0.37	0.51	0.81	1.12	2886	382	2	0	1	0	0	logfile
✔	8RNU	19395	2025-02-14	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.77	0.0	0.05	17.91	0.01	2.426	24.31	3.45	10.2	89.8	0.0	-2.07	0.65	0.65	0.39	0.44	10848	1320	12	0	0	0	0	logfile

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