Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XT9	38641	2025-02-11	2024-01-10	3.1	3.69	2.95	3.5	0.007	1.30	5.0	0.08	17.17	0.01	2.268	4.41	6.04	6.0	93.4	0.6	-0.55	0.68	0.80	2.69	3.5	0.003	0.66	0.0	0.04	16.96	0.00	2.510	6.81	4.63	4.1	95.9	0.0	0.35	1.16	0.70	0.83	2.47	6479	842	2	0	0	0	0	logfile
✔	8XSi	38619	2025-02-11	2024-01-09	2.1	2.13	2.10	1.9	0.003	0.60	0.0	0.05	12.12	0.00	2.136	4.88	0.55	6.4	93.4	0.2	-0.70	0.80	0.79	4.65	1.9	0.003	0.62	0.0	0.05	13.83	0.00	2.541	3.66	1.92	5.9	93.9	0.2	-0.76	0.89	0.83	0.82	4.65	3354	429	4	0	1	0	0	logfile
✘	8XSM	38622	2025-02-10	2024-01-09	3.01	3.31	3.04	3.3	0.008	0.93	0.0	0.05	13.81	0.01	2.161	5.27	1.40	3.8	96.2	0.0	-1.76	0.54	0.81	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2788	375	2	0	2	0	0	logfile
✔	8VKJ	43319	2025-02-13	2024-01-09	2.92	3.19	2.94	3.2	0.005	0.63	0.0	0.04	16.09	0.01	2.201	9.71	0.34	4.5	95.4	0.1	0.61	0.62	0.86	4.03	3.2	0.004	0.58	0.0	0.04	15.71	0.00	2.507	8.25	2.06	4.2	95.7	0.1	0.59	0.84	0.66	0.87	3.76	8622	1089	5	0	9	0	0	logfile
✔	8VKE	43315	2025-02-11	2024-01-09	3.1	3.35	3.10	3.3	0.003	0.59	0.0	0.04	14.19	0.00	2.103	5.82	0.14	2.6	97.4	0.0	-0.05	0.77	0.85	4.03	3.3	0.005	0.61	0.0	0.05	15.08	0.00	2.436	4.98	3.26	3.9	96.1	0.0	-0.86	0.33	0.70	0.83	3.58	6652	854	8	0	2	0	0	logfile
✔	8XRQ	38610	2025-02-10	2024-01-08	4.19	2.23	3.70	1.5	0.006	0.87	0.0	0.05	15.75	0.01	2.322	6.69	0.86	11.0	88.8	0.2	-3.50	0.50	0.46	—	1.6	0.004	0.80	0.0	0.05	13.33	0.01	2.425	12.89	0.00	13.7	86.0	0.2	-3.28	1.24	0.53	0.50	—	3210	407	3	0	0	0	0	logfile
✔	8XS0	38612	2025-02-14	2024-01-08	3.89	4.15	4.00	4.1	0.004	0.84	0.0	0.05	12.99	0.01	2.158	13.17	0.00	13.6	86.3	0.1	-0.93	0.67	0.80	2.30	4.0	0.004	0.79	0.0	0.04	15.35	0.01	2.425	9.16	3.35	10.6	89.3	0.1	-0.12	0.54	0.68	0.79	1.53	10353	1388	2	0	0	0	0	logfile
✔	8XS5	38615	2025-02-13	2024-01-08	3.33	3.40	3.21	3.3	0.011	0.88	0.0	0.05	13.49	0.01	2.081	9.41	0.00	6.7	93.2	0.1	-0.34	0.70	0.85	2.61	3.3	0.004	0.63	0.0	0.04	15.23	0.01	2.516	5.45	1.11	5.1	94.9	0.1	1.31	0.40	0.69	0.85	1.86	8705	1088	2	0	0	0	0	logfile
✔	8XRY	38611	2025-02-14	2024-01-08	3.84	3.84	3.74	3.8	0.004	0.74	0.0	0.04	12.99	0.00	2.253	10.68	0.00	9.3	90.5	0.1	-0.26	0.68	0.81	2.38	3.8	0.003	0.72	0.0	0.04	15.40	0.00	2.480	7.75	2.42	7.0	93.0	0.0	0.41	0.43	0.68	0.81	1.16	10616	1392	2	0	0	0	0	logfile
✔	8XS3	38613	2025-02-11	2024-01-08	3.46	4.59	3.46	3.9	0.005	0.77	0.0	0.05	13.19	0.02	2.090	16.27	0.00	5.0	95.0	0.0	-3.00	0.91	0.83	2.30	3.9	0.003	0.67	0.0	0.04	14.73	0.00	2.499	10.48	1.71	3.6	96.4	0.0	-0.77	1.07	0.91	0.84	2.37	4118	535	5	0	3	0	0	logfile
✔	8VJQ	43291	2025-02-13	2024-01-07	3.2	3.40	3.16	3.4	0.010	0.81	1.0	0.04	17.11	0.01	2.198	20.98	0.31	4.7	95.3	0.0	-0.02	0.44	0.82	3.27	3.4	0.004	0.60	0.0	0.04	17.43	0.00	2.125	17.26	4.63	3.7	96.3	0.0	0.90	0.29	0.42	0.81	3.08	9132	1180	6	0	6	4	0	logfile
✔	8VJM	43289	2025-02-11	2024-01-07	4.0	4.19	4.05	4.2	0.008	0.82	0.0	0.04	22.67	0.01	2.235	8.60	0.29	6.0	93.8	0.2	0.48	0.66	0.82	—	4.2	0.003	0.72	0.0	0.04	17.67	0.00	2.431	10.08	3.10	6.8	93.1	0.1	0.56	0.97	0.67	0.83	—	6667	808	5	0	3	0	0	logfile
✔	8XQR	38586	2025-02-12	2024-01-05	3.2	2.41	3.31	2.1	0.004	0.64	0.0	0.04	15.58	0.00	2.104	13.49	0.00	3.1	96.9	0.0	1.04	0.73	0.76	2.10	2.1	0.003	0.61	0.0	0.04	16.10	0.00	2.537	10.11	4.66	3.2	96.7	0.1	1.17	1.10	0.72	0.75	1.86	8273	1046	6	0	1	0	0	logfile
✔	8XQo	38583	2025-02-13	2024-01-05	2.77	2.28	2.96	2.0	0.003	0.57	0.0	0.04	15.54	0.00	1.853	11.79	0.10	3.0	97.0	0.0	1.14	0.78	0.80	3.08	2.0	0.003	0.57	0.0	0.04	16.14	0.00	2.569	8.66	3.37	3.0	97.0	0.0	1.02	0.30	0.79	0.80	2.82	8958	1132	6	0	2	0	0	logfile
✔	8XQL	38580	2025-02-12	2024-01-05	2.99	2.28	3.05	2.0	0.005	0.63	0.0	0.04	15.56	0.00	2.156	14.24	0.00	4.2	95.7	0.1	0.98	0.78	0.78	2.64	2.0	0.005	0.67	0.0	0.04	16.46	0.00	2.494	10.65	2.98	3.9	96.0	0.1	0.89	1.09	0.77	0.79	2.38	8368	1052	6	0	3	0	0	logfile
✔	8XQN	38582	2025-02-13	2024-01-05	3.05	2.30	3.12	2.0	0.004	0.62	0.0	0.04	15.73	0.00	2.075	14.89	0.00	3.6	96.4	0.0	1.02	0.76	0.77	2.27	2.0	0.004	0.63	0.0	0.04	16.15	0.00	2.532	9.99	3.47	3.5	96.5	0.0	0.90	0.31	0.76	0.78	2.17	8976	1135	6	0	2	0	0	logfile
✔	8XQP	38584	2025-02-13	2024-01-05	3.29	2.28	3.48	2.1	0.004	0.71	1.0	0.05	16.65	0.01	2.173	14.37	0.30	3.7	96.3	0.0	0.47	0.71	0.72	2.30	2.1	0.004	0.67	0.0	0.04	17.16	0.00	2.424	12.76	4.78	3.8	96.2	0.0	0.63	0.38	0.71	0.72	1.85	8987	1136	6	0	2	0	0	logfile
✘	8XQC	38573	2025-02-12	2024-01-05	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7233	843	5	24	2	0	0	logfile
✔	8XQJ	38579	2025-02-12	2024-01-05	2.95	2.21	3.02	2.0	0.003	0.57	0.0	0.04	14.51	0.00	2.244	10.26	0.00	4.3	95.7	0.0	0.73	0.78	0.78	2.69	2.0	0.003	0.62	0.0	0.04	14.84	0.00	2.607	9.46	2.45	4.0	96.0	0.0	1.00	0.24	0.77	0.79	2.49	6904	864	6	0	4	0	0	logfile
✔	8XQS	38587	2025-02-13	2024-01-05	3.3	2.38	3.33	2.1	0.004	0.60	0.0	0.04	15.23	0.01	2.078	14.68	0.31	3.6	96.4	0.0	0.32	0.75	0.75	2.02	2.2	0.004	0.62	0.0	0.04	15.78	0.00	2.516	11.01	4.22	3.1	96.9	0.0	0.57	0.35	0.74	0.74	1.78	8867	1122	6	0	2	0	0	logfile

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