Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XQR	38586	2025-02-12	2024-01-05	3.2	2.41	3.31	2.1	0.004	0.64	0.0	0.04	15.58	0.00	2.104	13.49	0.00	3.1	96.9	0.0	1.04	0.73	0.76	2.10	2.1	0.003	0.61	0.0	0.04	16.10	0.00	2.537	10.11	4.66	3.2	96.7	0.1	1.17	1.10	0.72	0.75	1.86	8273	1046	6	0	1	0	0	logfile
✔	8XQS	38587	2025-02-13	2024-01-05	3.3	2.38	3.33	2.1	0.004	0.60	0.0	0.04	15.23	0.01	2.078	14.68	0.31	3.6	96.4	0.0	0.32	0.75	0.75	2.02	2.2	0.004	0.62	0.0	0.04	15.78	0.00	2.516	11.01	4.22	3.1	96.9	0.0	0.57	0.35	0.74	0.74	1.78	8867	1122	6	0	2	0	0	logfile
✔	8XQ4	38565	2025-02-12	2024-01-04	3.21	2.33	3.21	3.1	0.003	0.74	0.0	0.05	12.52	0.01	2.267	3.69	3.90	4.0	96.0	0.0	-1.41	0.70	0.77	1.54	2.0	0.003	0.66	0.0	0.04	15.99	0.00	2.453	8.09	4.01	4.1	95.9	0.0	1.51	1.23	0.71	0.78	1.52	8237	1044	1	0	0	0	0	logfile
✔	8XQ6	38567	2025-02-12	2024-01-04	3.36	2.35	3.31	3.1	0.005	0.79	0.0	0.05	13.25	0.01	2.301	4.44	4.56	3.8	96.2	0.0	-1.53	0.70	0.78	1.34	2.0	0.004	0.67	0.0	0.04	15.96	0.00	2.478	9.36	4.21	4.2	95.8	0.0	0.97	1.24	0.71	0.78	1.39	8063	1020	1	0	0	0	0	logfile
✔	8XQA	38571	2025-02-14	2024-01-04	3.54	2.60	3.54	2.0	0.005	0.76	0.0	0.05	15.00	0.01	2.268	5.07	6.62	2.0	98.0	0.0	-1.20	0.73	0.75	1.12	2.0	0.003	0.67	0.0	0.04	17.04	0.00	2.560	10.70	5.49	2.1	97.9	0.0	2.35	0.51	0.73	0.75	1.02	10602	1356	2	0	0	0	0	logfile
✔	8XPS	38560	2025-02-11	2024-01-04	3.22	3.24	3.25	1.5	0.005	0.85	1.0	0.06	20.48	0.00	2.208	5.24	4.58	9.0	90.6	0.4	-4.49	0.90	0.82	3.01	1.5	0.004	0.91	0.0	0.05	15.63	0.01	2.472	9.80	3.12	8.9	91.1	0.0	-1.95	1.32	0.92	0.87	2.79	4568	546	7	0	24	0	0	logfile
✔	8XQ9	38570	2025-02-14	2024-01-04	3.77	2.79	3.79	2.7	0.003	0.71	0.0	0.04	14.17	0.01	2.293	4.12	4.48	2.1	97.9	0.0	-1.10	0.68	0.71	0.75	2.8	0.003	0.76	0.0	0.04	16.29	0.00	2.330	12.83	3.71	2.2	97.8	0.0	2.03	0.58	0.70	0.73	0.76	10672	1366	2	0	0	0	0	logfile
✔	8XPY	38563	2025-02-11	2024-01-04	3.63	3.53	3.62	1.6	0.004	0.79	0.0	0.05	29.42	0.00	2.217	10.44	4.39	10.1	89.9	0.0	-4.21	0.90	0.79	2.54	1.5	0.004	0.89	0.0	0.05	15.66	0.00	2.343	13.33	3.14	13.8	86.2	0.0	-2.24	2.12	0.92	0.84	2.10	4568	546	7	0	25	0	0	logfile
✔	8XQ8	38569	2025-02-12	2024-01-04	3.35	2.39	3.39	2.0	0.007	1.24	0.0	0.06	17.54	0.01	2.255	7.43	0.77	2.7	97.3	0.0	-1.52	0.68	0.76	1.59	2.9	0.003	0.68	0.0	0.04	18.02	0.00	2.535	11.56	4.31	3.0	97.0	0.0	1.59	1.62	0.69	0.78	1.49	8319	1051	2	0	1	0	0	logfile
✔	8ViF	43260	2025-02-11	2024-01-04	3.1	3.32	3.03	3.3	0.004	0.61	0.0	0.04	13.83	0.01	2.184	5.82	0.00	3.1	96.9	0.0	0.05	0.70	0.84	3.63	3.3	0.005	0.59	0.0	0.05	14.87	0.00	2.524	5.52	1.36	4.5	95.5	0.0	-0.39	0.99	0.69	0.85	3.54	3326	427	4	0	1	0	0	logfile
✔	8Vi5	43249	2025-02-12	2024-01-03	3.2	3.48	3.25	3.5	0.003	0.49	0.0	0.04	12.93	0.00	1.764	4.66	0.00	1.5	98.5	0.0	2.79	0.63	0.85	3.44	3.5	0.003	0.51	0.0	0.04	14.08	0.00	2.664	5.19	0.65	2.1	97.9	0.0	2.61	1.04	0.59	0.85	2.95	7359	924	3	0	0	0	0	logfile
✔	8Vi4	43248	2025-02-12	2024-01-03	3.1	3.45	3.13	3.4	0.003	0.46	0.0	0.04	12.37	0.00	2.132	4.99	0.13	1.7	98.3	0.0	2.48	0.70	0.88	4.44	3.4	0.003	0.48	0.0	0.04	13.60	0.00	2.635	3.37	1.17	2.0	98.0	0.0	3.08	0.29	0.64	0.89	3.71	7359	924	3	0	0	0	0	logfile
✔	8Vi2	43246	2025-02-12	2024-01-03	3.1	3.54	3.18	3.5	0.003	0.48	0.0	0.04	12.42	0.00	2.029	6.59	0.00	3.7	96.3	0.0	0.67	0.62	0.86	5.04	3.5	0.003	0.54	0.0	0.04	13.69	0.00	2.590	4.77	0.52	2.6	97.4	0.0	3.40	0.86	0.59	0.87	4.32	7382	924	3	0	0	0	0	logfile
✔	8ViB	43256	2025-02-11	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.003	0.76	0.0	0.04	5.70	0.00	2.472	5.79	0.00	10.6	89.0	0.5	-1.94	3.62	0.49	0.74	—	4421	888	6	0	7	0	0	logfile
✔	8Vi3	43247	2025-02-12	2024-01-03	2.9	3.36	3.11	3.3	0.002	0.44	0.0	0.04	12.32	0.00	2.186	4.59	0.00	1.2	98.8	0.0	2.50	0.69	0.87	5.29	3.3	0.002	0.47	0.0	0.04	14.71	0.00	2.494	3.78	0.78	1.7	98.3	0.0	2.31	0.33	0.64	0.89	4.41	7359	924	3	0	0	0	0	logfile
✔	8RLE	19340	2025-02-11	2024-01-02	3.75	3.00	3.79	3.9	0.003	0.56	0.0	0.04	13.17	0.00	2.286	7.87	0.00	1.6	98.4	0.0	0.41	0.59	0.59	0.77	3.9	0.004	1.25	0.0	0.04	15.48	0.00	2.253	12.10	1.13	4.5	95.5	0.0	0.03	0.75	0.62	0.64	0.82	6618	450	3	0	0	0	3190	logfile
✔	8XoR	38538	2025-02-14	2024-01-02	3.0	3.68	2.90	3.3	0.005	0.90	0.0	0.06	14.20	0.01	2.242	5.41	0.33	4.3	95.7	0.0	-0.55	0.72	0.83	3.69	3.3	0.003	0.68	0.0	0.04	14.58	0.00	2.468	5.19	1.30	2.8	97.2	0.0	1.22	1.65	0.72	0.84	2.55	8979	1160	6	0	6	0	0	logfile
✔	8VHV	43242	2025-02-10	2024-01-02	2.3	2.29	2.28	2.3	0.003	0.64	0.0	0.04	12.39	0.01	2.325	1.50	0.00	4.9	95.1	0.0	0.22	0.44	0.58	4.47	2.3	0.003	0.59	0.0	0.04	16.16	0.00	2.634	7.86	4.32	1.2	98.8	0.0	2.45	0.47	0.44	0.57	2.75	1335	172	1	0	0	0	0	logfile
✔	8RLA	19336	2025-02-12	2024-01-02	3.03	2.57	3.09	3.1	0.002	0.51	0.0	0.04	13.05	0.00	2.009	10.36	0.00	2.0	98.0	0.0	0.42	0.73	0.71	2.29	3.2	0.004	1.12	0.0	0.04	15.85	0.00	2.417	9.87	2.10	3.2	96.8	0.0	0.87	0.70	0.74	0.72	2.82	8304	560	3	0	1	0	4091	logfile
✔	8XoS	38539	2025-02-14	2024-01-02	3.2	3.77	3.08	3.5	0.008	0.90	0.0	0.06	12.89	0.01	2.197	6.31	0.72	4.6	95.4	0.0	-0.80	0.73	0.84	3.37	3.4	0.003	0.71	0.0	0.04	14.67	0.00	2.518	7.49	1.54	2.7	97.3	0.0	0.71	1.30	0.73	0.84	2.80	8919	1136	6	0	2	0	0	logfile

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