Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XoS	38539	2025-02-14	2024-01-02	3.2	3.77	3.08	3.5	0.008	0.90	0.0	0.06	12.89	0.01	2.197	6.31	0.72	4.6	95.4	0.0	-0.80	0.73	0.84	3.37	3.4	0.003	0.71	0.0	0.04	14.67	0.00	2.518	7.49	1.54	2.7	97.3	0.0	0.71	1.30	0.73	0.84	2.80	8919	1136	6	0	2	0	0	logfile
✔	8VHV	43242	2025-02-10	2024-01-02	2.3	2.29	2.28	2.3	0.003	0.64	0.0	0.04	12.39	0.01	2.325	1.50	0.00	4.9	95.1	0.0	0.22	0.44	0.58	4.47	2.3	0.003	0.59	0.0	0.04	16.16	0.00	2.634	7.86	4.32	1.2	98.8	0.0	2.45	0.47	0.44	0.57	2.75	1335	172	1	0	0	0	0	logfile
✔	8XoR	38538	2025-02-14	2024-01-02	3.0	3.68	2.90	3.3	0.005	0.90	0.0	0.06	14.20	0.01	2.242	5.41	0.33	4.3	95.7	0.0	-0.55	0.72	0.83	3.69	3.3	0.003	0.68	0.0	0.04	14.58	0.00	2.468	5.19	1.30	2.8	97.2	0.0	1.22	1.65	0.72	0.84	2.55	8979	1160	6	0	6	0	0	logfile
✔	8RLD	19339	2025-02-11	2024-01-02	2.84	2.96	2.86	3.1	0.003	0.59	0.0	0.04	12.39	0.00	1.981	7.12	0.00	1.2	98.8	0.0	1.29	0.45	0.58	1.50	3.0	0.004	0.60	0.0	0.04	15.26	0.01	2.345	7.59	0.91	3.1	96.9	0.0	1.51	0.68	0.49	0.63	2.23	6416	422	2	0	1	0	3209	logfile
✔	8VHF	43236	2025-02-12	2024-01-01	3.51	3.98	3.52	3.9	0.004	0.82	0.0	0.04	17.72	0.00	2.237	9.63	0.34	3.7	96.3	0.0	-0.22	0.66	0.79	1.26	3.9	0.004	0.71	0.0	0.04	17.70	0.00	2.405	10.72	4.93	4.4	95.6	0.0	0.19	0.30	0.68	0.81	1.16	8299	1057	6	0	1	0	0	logfile
✔	8XoF	38527	2025-02-12	2024-01-01	2.6	3.08	2.84	3.1	0.004	0.58	0.0	0.04	15.97	0.00	2.160	4.08	0.46	3.1	96.9	0.0	1.62	0.64	0.86	3.81	3.1	0.003	0.57	0.0	0.04	17.03	0.00	2.398	4.83	2.77	2.5	97.5	0.0	1.44	1.12	0.60	0.84	3.38	8025	1015	6	0	1	0	0	logfile
✘	8XoG	38528	2025-02-13	2024-01-01	2.9	3.23	3.04	3.2	0.003	0.56	0.0	0.04	14.84	0.00	2.247	3.53	0.21	2.5	97.5	0.0	0.78	0.47	0.74	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8708	1115	6	0	0	2	0	logfile
✔	8XoH	38529	2025-02-13	2024-01-01	3.2	3.06	3.20	3.2	0.003	0.56	0.0	0.04	15.16	0.00	2.215	4.05	0.21	2.6	97.4	0.0	0.74	0.60	0.81	3.13	3.2	0.004	0.61	0.0	0.04	16.64	0.00	2.355	6.34	2.50	2.6	97.4	0.0	0.98	1.19	0.57	0.81	2.34	8809	1116	5	0	0	0	0	logfile
✔	8XoJ	38531	2025-02-13	2024-01-01	3.1	3.41	3.14	3.3	0.003	0.56	0.0	0.04	15.11	0.00	2.311	3.72	0.32	2.7	97.3	0.0	1.17	0.66	0.81	3.58	3.3	0.004	0.60	0.0	0.04	16.49	0.00	2.513	5.21	2.42	2.7	97.3	0.0	1.31	1.15	0.64	0.81	2.88	8785	1117	5	0	0	0	0	logfile
✔	8Xoi	38530	2025-02-13	2024-01-01	3.2	2.88	2.44	3.1	0.003	0.54	0.0	0.04	15.22	0.00	2.211	4.54	0.32	2.6	97.4	0.0	0.82	0.59	0.80	3.11	3.1	0.003	0.54	0.0	0.04	16.28	0.00	2.565	5.23	2.64	2.5	97.5	0.0	1.31	0.44	0.59	0.82	2.65	8753	1115	5	0	0	0	0	logfile
✔	8XoB	38525	2025-02-10	2023-12-31	3.15	3.40	3.18	3.4	0.005	0.80	0.0	0.04	12.87	0.01	2.358	3.44	0.00	4.2	95.8	0.0	-1.77	0.62	0.83	2.37	3.4	0.003	0.69	0.0	0.04	14.59	0.01	2.585	2.41	1.67	3.7	96.3	0.0	2.24	0.30	0.60	0.84	1.08	2858	387	1	0	0	0	0	logfile
✘	8XoA	38524	2025-02-10	2023-12-31	3.03	3.24	3.01	3.3	0.007	1.00	1.0	0.06	11.52	0.01	2.346	6.05	0.00	1.3	98.7	0.0	0.90	0.57	0.77	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2713	376	2	0	1	0	0	logfile
✔	8Xo9	38523	2025-02-10	2023-12-31	3.2	3.60	3.34	3.6	0.004	0.74	0.0	0.04	14.59	0.01	2.284	5.40	0.00	2.6	97.4	0.0	1.96	0.52	0.81	2.01	3.6	0.004	0.74	0.0	0.04	15.56	0.01	2.581	5.40	3.30	2.6	97.4	0.0	2.31	1.29	0.49	0.80	1.70	2908	392	2	0	1	0	0	logfile
✔	8VH0	43230	2025-02-13	2023-12-30	2.3	2.58	2.45	2.6	0.010	0.65	0.0	0.04	17.13	0.00	2.196	18.26	2.37	3.1	96.8	0.2	0.83	0.48	0.83	4.19	2.7	0.003	0.54	0.0	0.04	17.26	0.00	2.148	12.88	2.47	2.5	97.4	0.2	0.94	1.08	0.43	0.81	3.97	9136	1180	6	0	4	8	0	logfile
✔	8XNB	38500	2025-02-11	2023-12-29	3.8	3.92	3.23	3.9	0.005	0.89	0.0	0.05	16.79	0.01	2.165	10.91	0.54	6.0	94.0	0.0	-1.56	0.56	0.78	2.59	3.9	0.003	0.72	0.0	0.04	17.56	0.00	2.576	9.24	3.42	5.3	94.7	0.0	-1.95	1.16	0.56	0.79	3.23	5580	738	2	0	0	0	0	logfile
✔	8XN3	38496	2025-02-14	2023-12-28	2.64	2.38	2.65	2.4	0.003	0.57	0.0	0.04	13.62	0.00	2.067	9.37	0.00	3.4	96.6	0.0	1.25	0.62	0.63	2.51	2.1	0.004	0.79	0.0	0.05	17.06	0.01	2.276	12.99	2.45	3.7	96.3	0.0	0.24	1.12	0.73	0.72	2.51	6505	791	3	0	7	0	0	logfile
✔	8XN2	38495	2025-02-14	2023-12-28	2.79	2.29	2.72	2.9	0.004	0.63	0.0	0.06	14.75	0.01	2.206	7.92	0.00	3.3	96.7	0.0	1.32	0.63	0.64	1.62	2.0	0.005	1.17	1.0	0.06	16.62	0.01	2.271	14.52	1.44	3.3	96.7	0.0	0.77	0.76	0.74	0.74	1.44	6527	791	4	0	9	0	0	logfile
✔	8VGT	43224	2025-02-11	2023-12-27	2.9	3.22	2.90	3.2	0.011	1.30	1.0	0.07	10.51	0.01	2.374	2.03	0.70	3.9	95.6	0.5	-0.41	0.68	0.77	5.20	3.2	0.005	0.69	0.0	0.05	14.33	0.00	2.535	4.28	3.26	2.9	97.1	0.0	-0.41	1.15	0.64	0.78	4.72	4714	629	4	0	5	0	0	logfile
✔	8XMJ	38479	2025-02-11	2023-12-27	4.18	4.63	4.20	4.4	0.004	0.66	0.0	0.05	24.61	0.00	1.932	8.98	0.00	5.2	94.8	0.0	2.35	0.56	0.76	—	4.5	0.003	0.58	0.0	0.04	13.16	0.00	1.966	8.72	0.00	5.4	94.5	0.2	2.04	0.98	0.63	0.81	—	4314	648	4	0	11	0	0	logfile
✔	8VGo	43216	2025-02-13	2023-12-27	2.6	3.19	2.67	3.0	0.003	0.68	0.0	0.04	13.68	0.01	2.309	2.92	0.19	4.8	94.7	0.5	-0.28	0.72	0.84	3.99	3.0	0.006	0.77	0.0	0.05	16.00	0.01	2.586	7.04	2.04	3.1	96.9	0.0	1.29	1.13	0.71	0.83	4.03	9148	1206	6	0	0	0	0	logfile

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